mRNA_P-canaliculata_contig10383.528.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10383.528.1
Unique NamemRNA_P-canaliculata_contig10383.528.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 4.600e-137
Identity = 234/330 (70.91%), Postives = 266/330 (80.61%), Query Frame = 1 
Query:    1 LRKKDDSEELELVVDETLQSTVSTVGVRVATIRSKTGG----------ICWSKKKSATPPSSGNXXXXXXXXXXXXXXXXXXXXXXXXR-----KGNIIPLAFYPKANARYTLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSG-NTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLD-DETVAPAD 939
            L++K+ SEELE+VVDE L++T +T GV +ATI S   G          +   K K      +  XXXXXXXXXXXXXXXXX       +     +G+ IP+A Y  ANARYTL+YSHGNATDIGAMHDRCAGIAEAVG+NVLAYDYTGYG A+GSPTEA+TYRDIEAVCAWARK+VL EG+DGSG N GHGLILYGQSVGSGPTCY+A DK+KG+FAGVVLHSPILSGMRVLTESRALSCLDIYPNVDR +R+ CPVMV+HG  DEEVPWEHGKG+FEAVPE  RR PWWVPDRGHNDICEGRRHLRE+ ARL AFV+SLD D+ +A A+
Sbjct:   38 LKRKEGSEELEMVVDEVLEATATTEGVEIATIVSGVSGSRCGEPVLAAVANPKPKGKRNSKAAGXXXXXXXXXXXXXXXXXGGFAKVGKIGGGGRGSTIPVALYRTANARYTLIYSHGNATDIGAMHDRCAGIAEAVGVNVLAYDYTGYGRASGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGSFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRASRITCPVMVMHGARDEEVPWEHGKGIFEAVPEPLRRRPWWVPDRGHNDICEGRRHLREYFARLSAFVRSLDRDDPIATAE 367
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BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 252 bits (643), Expect = 3.040e-73
Identity = 125/236 (52.97%), Postives = 160/236 (67.80%), Query Frame = 1 
Query:  235 RKGNIIPLAFYPKANARYTLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSP-TEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLDDETVAPAD 939
            R+  +I    Y    A  T+VYSHGNATD+GAMHDR  G+A  + +NVLAYDYTGYG ++G   TE  TY DIEA C W  +++ S       N    LILYGQSVGSGP+CY A   ++   AGV+LHSP LSGMRV T SRAL+CLDI+PN+ RI +V+CPVMV+HG+ DEEVP  HG+G+  AVP   +R PWWVP++GHN+IC G   + E++ R+  F+ SL +E     D
Sbjct:   71 RRKKVITAVLYRAEGASKTIVYSHGNATDLGAMHDRYVGLATILKVNVLAYDYTGYGQSSGDMCTEPDTYADIEAACQWVIENISS-------NPAEDLILYGQSVGSGPSCYYA---SRHAAAGVILHSPFLSGMRVFTASRALACLDIFPNIKRIQKVQCPVMVIHGLADEEVPCAHGQGLHAAVPRDLQREPWWVPEKGHNNICSGDA-IPEYYERINKFLGSLKEEAEVQID 295
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A6U3R8T6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8T6_9STRA)

HSP 1 Score: 242 bits (617), Expect = 5.840e-68
Identity = 116/216 (53.70%), Postives = 153/216 (70.83%), Query Frame = 1 
Query:  274 ANARY-TLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLDD 918
            ANA+  T++YSHGNATD+GAM+   + +A  +  NV+ YDY+GYG + G P E  TYRDI+ V  W  KH+  E  + S      +++YGQSVGSGP+CYIA  K + N  G++LHSP  SGMRVLT SRAL+CLDI+PN+DRI  V CP +V+HGM DEEV   HG+ ++EA+ +  +R PWWVPDRGHNDI +G  HL E+  R+K F+ S+DD
Sbjct:  219 ANAKTKTILYSHGNATDVGAMNLTQSFLARHLNANVIVYDYSGYGQSGGVPMEKNTYRDIKLVYEWTAKHLAYEKREES------IVVYGQSVGSGPSCYIA--KKRQNIGGLILHSPFTSGMRVLTPSRALACLDIFPNIDRIKHVSCPTLVIHGMKDEEVDVAHGRALYEALKDDCKREPWWVPDRGHNDIMDGGSHLEEYLRRVKRFLASIDD 426
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: B5Y3S1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3S1_PHATC)

HSP 1 Score: 234 bits (596), Expect = 1.290e-66
Identity = 117/211 (55.45%), Postives = 146/211 (69.19%), Query Frame = 1 
Query:  283 RYTLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLD 915
            R T++YSHGNATDIGAM      +A ++  NVL+YDY+GYG + G P E  TYRD+EAV  +  +H+       +GN    +ILYGQSVGSGP CY+A   T+ +  G++LHSP  SGMRVLT SR LSCLDIYPN+DRI +V CPVMV+HG  D+EV   HG  +  AVPE+ RR PWWV DRGHNDI EG   L ++  RL+ F+ SLD
Sbjct:   95 RKTIIYSHGNATDIGAMFPIQVVMAHSLDCNVLSYDYSGYGESGGVPDEHATYRDMEAVYEYVLEHL-------AGNAPSNVILYGQSVGSGPCCYLAA--TENDLGGMILHSPFTSGMRVLTPSRLLSCLDIYPNIDRIKKVSCPVMVIHGRLDQEVDVSHGMDIHNAVPEECRRDPWWVSDRGHNDIIEGPGKLSQYVRRLRRFLNSLD 296
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A1W0AB71_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB71_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.360e-66
Identity = 113/230 (49.13%), Postives = 154/230 (66.96%), Query Frame = 1 
Query:  235 RKGNIIPLAFYPKANARYTLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLDDET 924
            R GN +P   +    A +T+V+SHGNATD GAM  R   ++  + +NV+AYDY+GYG ATG PTEA TY DIEA+  +A KH+        G     +ILYGQSVGSGP+ Y+A  + +    G+++HS +LSG+RVLT SRAL CLDI+PN+DRI RV CP +++HG  D E+   HGKG++EA+PE  +  P+WVP+RGHNDI E      E+ ARL+ ++  L D +
Sbjct:   75 RVGNEVPCFVFRYPEAEFTIVFSHGNATDCGAMFSRYVSLSRELSVNVVAYDYSGYGGATGRPTEANTYCDIEAIFEFATKHL--------GYAADSIILYGQSVGSGPSVYLAAKEHR--IRGLIVHSGLLSGIRVLTSSRALGCLDIFPNIDRIKRVSCPSLIIHGDKDVEINISHGKGLYEALPENCKVQPYWVPNRGHNDIGESHECRAEYMARLREYLLYLHDHS 294
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A1V9ZDL9_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDL9_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.610e-65
Identity = 114/224 (50.89%), Postives = 150/224 (66.96%), Query Frame = 1 
Query:  241 GNIIPLAFYPKANARYTLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSL 912
            GN IP   +    A +TL++SHGNATD GAM+ R   ++  + +NV+AYDY+GYGAATG PTEA TY DI A+  +  K +        G   H +ILYGQSVGSGP+ Y+A  + K    G+++HS +LSGMRVLT SRAL CLD YPN+DRI RV+CP +++HG  D E+   HGKG++EA+PE  +  P+WVP RGHNDI E R    E+ A L  ++Q L
Sbjct:   77 GNEIPCFVFRYPEAEFTLIFSHGNATDCGAMYSRYLALSRELSVNVVAYDYSGYGAATGRPTEANTYTDITAILDFCIKQL--------GYAEHKIILYGQSVGSGPSIYLASKEHK--IRGLIVHSGLLSGMRVLTPSRALGCLDTYPNIDRIKRVQCPTLIIHGEEDMEINISHGKGLYEALPEHCKFEPYWVPHRGHNDIGETRDCREEYIAHLSKYIQYL 290
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A1E7FIN2_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FIN2_9STRA)

HSP 1 Score: 226 bits (577), Expect = 7.440e-64
Identity = 111/209 (53.11%), Postives = 147/209 (70.33%), Query Frame = 1 
Query:  289 TLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLD 915
            T++YSHGNATDIGAM+   A ++ ++  NV++YDY+GYG + G+  E+ TY DI  V  W   +V   GD         +ILYGQSVGSGP C ++  K +G   G++LHSP +SGMRVLT SRAL+CLD+YPN+DR+ + +CPVMV+HG  DEEV   HG  M +AVP  ++R PWWVPDRGHNDI EG   L E+  RL++F++SLD
Sbjct:  103 TIIYSHGNATDIGAMYPLQAILSNSLECNVVSYDYSGYGESGGTAMESNTYTDIAGVYEWTLDNVCF-GDQSR------IILYGQSVGSGPCCRLS-QKIEG-LGGMILHSPFMSGMRVLTPSRALACLDVYPNIDRVRKTKCPVMVIHGRLDEEVDITHGTSMHQAVPHHFKRDPWWVPDRGHNDITEGPGKLMEYVGRLRSFMESLD 302
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A448Z4K0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4K0_9STRA)

HSP 1 Score: 231 bits (588), Expect = 8.030e-64
Identity = 116/209 (55.50%), Postives = 146/209 (69.86%), Query Frame = 1 
Query:  289 TLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLD 915
            T++YSHGNATDIGAM+     ++ ++  NV++YDY+GYGA+ G   EA TY DI AV  W   +V   GD+        +ILYGQSVGSGP C++A  +     AG+VLHSP +SGMRVLT SRAL+CLDIYPN+DR+A+ +CPVMV+HG  DEEV   HG  M  AVP+  +R PWWVPDRGHNDI EG   L E+  RL+ F+ SLD
Sbjct:  231 TIIYSHGNATDIGAMYPLQVILSNSLECNVVSYDYSGYGASGGVAMEANTYTDIAAVYEWTLHNVCG-GDESR------IILYGQSVGSGPCCHLA--RHVDGLAGMVLHSPFMSGMRVLTPSRALACLDIYPNIDRVAKTKCPVMVIHGRLDEEVDVGHGIAMHAAVPDHLKRDPWWVPDRGHNDITEGPGKLAEYVGRLREFLASLD 430
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A7S4AEP6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AEP6_9STRA)

HSP 1 Score: 228 bits (581), Expect = 3.850e-63
Identity = 113/209 (54.07%), Postives = 145/209 (69.38%), Query Frame = 1 
Query:  289 TLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLD 915
            T++YSHGNATDIGAM+     ++ ++  NV++YDY+GYG + G   EA TY DI +V  W  K+V   GD+        ++LYGQSVGSGP C++A  K      G+VLHSP +SGMRVLT SRAL+CLDIYPN+DR+A+ +CPVMV+HG  D+EV   HG  M  AVP  ++R PWWVPDRGHNDI EG   L E+  RL+ F+ SLD
Sbjct:  205 TIIYSHGNATDIGAMYPLQVILSNSLECNVVSYDYSGYGESGGVAMEANTYTDIASVYEWTLKNVCG-GDESR------IVLYGQSVGSGPCCHLA--KQVDGLGGMVLHSPFMSGMRVLTPSRALACLDIYPNIDRVAKTKCPVMVIHGRLDDEVDVGHGISMHAAVPLHFKRDPWWVPDRGHNDITEGPGKLAEYVVRLRKFLASLD 404
[Close]
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Match: A0A067CL46_SAPPC (Hydrolase_4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CL46_SAPPC)

HSP 1 Score: 224 bits (571), Expect = 4.110e-63
Identity = 110/226 (48.67%), Postives = 150/226 (66.37%), Query Frame = 1 
Query:  235 RKGNIIPLAFYPKANARYTLVYSHGNATDIGAMHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKHVLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGMFEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSL 912
            R GN +P   +    A +TL++SHGNATD GAM+ R   ++  + +NV+AYDY+GYGAATG P EA TY DI AV  +  +H+            H +ILYGQSVGSGP+ Y+A  + K    G+++HS +LSGMRVLT SRAL CLD +PN+DRI RV+C  +++HG +D E+   HGKG++EA+P+  +  P WVP RGHNDI E R    E+ A L+ ++Q L
Sbjct:   75 RPGNEVPCFVFRYPEAEFTLIFSHGNATDCGAMYSRYIALSRELAVNVVAYDYSGYGAATGRPNEANTYTDITAVFDFCVQHLRYPA--------HKIILYGQSVGSGPSIYLAAKELK--IRGLIVHSGLLSGMRVLTPSRALGCLDTFPNIDRIKRVQCSTLIIHGEDDVEISLSHGKGLYEALPDHCKFEPHWVPHRGHNDIGETRECRAEYIAHLQKYLQHL 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10383.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNT2_9PHAE4.600e-13770.91Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A6S9I0E5_HETAK3.040e-7352.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U3R8T6_9STRA5.840e-6853.70Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
B5Y3S1_PHATC1.290e-6655.45Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1W0AB71_9STRA4.360e-6649.13Hydrolase_4 domain-containing protein n=1 Tax=Thra... [more]
A0A1V9ZDL9_9STRA1.610e-6550.89Hydrolase_4 domain-containing protein n=1 Tax=Achl... [more]
A0A1E7FIN2_9STRA7.440e-6453.11Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylind... [more]
A0A448Z4K0_9STRA8.030e-6455.50Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4AEP6_9STRA3.850e-6354.07Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A067CL46_SAPPC4.110e-6348.67Hydrolase_4 domain-containing protein n=2 Tax=Sapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10383contigP-canaliculata_contig10383:1043..7883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue5e-52
Seed eggNOG ortholog2850.Phatr28215
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs2XBWF@2836,COG1073@1,KOG1552@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-28_001050.1
Exons8
Model size2639
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10383.528.1prot_P-canaliculata_contig10383.528.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10383 2648..6968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.5060568-UTR-P-canaliculata_contig10383:1042..18751622815608.5060568-UTR-P-canaliculata_contig10383:1042..1875Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 1043..1875 -
1693494163.8370788-UTR-P-canaliculata_contig10383:1042..18751693494163.8370788-UTR-P-canaliculata_contig10383:1042..1875Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 1043..1875 -
1622815608.5208783-UTR-P-canaliculata_contig10383:1978..26471622815608.5208783-UTR-P-canaliculata_contig10383:1978..2647Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 1979..2647 -
1693494163.848971-UTR-P-canaliculata_contig10383:1978..26471693494163.848971-UTR-P-canaliculata_contig10383:1978..2647Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 1979..2647 -
1622815608.6146767-UTR-P-canaliculata_contig10383:6968..72411622815608.6146767-UTR-P-canaliculata_contig10383:6968..7241Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 6969..7241 -
1693494163.933663-UTR-P-canaliculata_contig10383:6968..72411693494163.933663-UTR-P-canaliculata_contig10383:6968..7241Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 6969..7241 -
1622815608.6244392-UTR-P-canaliculata_contig10383:7826..78831622815608.6244392-UTR-P-canaliculata_contig10383:7826..7883Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 7827..7883 -
1693494163.9416-UTR-P-canaliculata_contig10383:7826..78831693494163.9416-UTR-P-canaliculata_contig10383:7826..7883Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10383 7827..7883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.534045-CDS-P-canaliculata_contig10383:2647..29121622815608.534045-CDS-P-canaliculata_contig10383:2647..2912Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 2648..2912 -
1693494163.8585007-CDS-P-canaliculata_contig10383:2647..29121693494163.8585007-CDS-P-canaliculata_contig10383:2647..2912Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 2648..2912 -
1622815608.5478067-CDS-P-canaliculata_contig10383:3473..35921622815608.5478067-CDS-P-canaliculata_contig10383:3473..3592Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 3474..3592 -
1693494163.8685331-CDS-P-canaliculata_contig10383:3473..35921693494163.8685331-CDS-P-canaliculata_contig10383:3473..3592Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 3474..3592 -
1622815608.5611901-CDS-P-canaliculata_contig10383:4635..47841622815608.5611901-CDS-P-canaliculata_contig10383:4635..4784Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 4636..4784 -
1693494163.8784027-CDS-P-canaliculata_contig10383:4635..47841693494163.8784027-CDS-P-canaliculata_contig10383:4635..4784Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 4636..4784 -
1622815608.5767312-CDS-P-canaliculata_contig10383:5575..56631622815608.5767312-CDS-P-canaliculata_contig10383:5575..5663Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 5576..5663 -
1693494163.8989637-CDS-P-canaliculata_contig10383:5575..56631693494163.8989637-CDS-P-canaliculata_contig10383:5575..5663Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 5576..5663 -
1622815608.5903707-CDS-P-canaliculata_contig10383:6537..66401622815608.5903707-CDS-P-canaliculata_contig10383:6537..6640Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 6538..6640 -
1693494163.9134324-CDS-P-canaliculata_contig10383:6537..66401693494163.9134324-CDS-P-canaliculata_contig10383:6537..6640Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 6538..6640 -
1622815608.6036072-CDS-P-canaliculata_contig10383:6885..69681622815608.6036072-CDS-P-canaliculata_contig10383:6885..6968Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 6886..6968 -
1693494163.9260776-CDS-P-canaliculata_contig10383:6885..69681693494163.9260776-CDS-P-canaliculata_contig10383:6885..6968Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10383 6886..6968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10383.528.1

>prot_P-canaliculata_contig10383.528.1 ID=prot_P-canaliculata_contig10383.528.1|Name=mRNA_P-canaliculata_contig10383.528.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=269bp
MHDRCAGIAEAVGINVLAYDYTGYGAATGSPTEAQTYRDIEAVCAWARKH
VLSEGDDGSGNTGHGLILYGQSVGSGPTCYIAGDKTKGNFAGVVLHSPIL
SGMRVLTESRALSCLDIYPNVDRIARVRCPVMVLHGMNDEEVPWEHGKGM
FEAVPEKYRRPPWWVPDRGHNDICEGRRHLREFHARLKAFVQSLDDETVA
PADPSIGVTTSGETRSGNEESRSSLEALKSRHSSKSTTEAVETTEPNESG
PKETAICSKSASVREEVA*
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mRNA from alignment at P-canaliculata_contig10383:1043..7883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10383.528.1 ID=mRNA_P-canaliculata_contig10383.528.1|Name=mRNA_P-canaliculata_contig10383.528.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6841bp|location=Sequence derived from alignment at P-canaliculata_contig10383:1043..7883- (Pelvetia canaliculata dioecious)
CTGAGAAAGAAGGACGATAGCGAGGAGCTCGAGCTGGTGGTCGATGAAAC
GCTTCAGGCAAGCCAGTTAGCTCTGGGTACGGGGGGGGCGAGGGGGTTCT
TGAGAGTTTGTTGCGTATTTTAATGCTTGTGTGAGGAGAAATAGGGCGGG
GCTTTCCACGAGGCGTTCTATCGTCAATTGTTAGACGTTTTGTCTGAGGC
ATGAAGCCTTTTTTTGCCAAAGGAGGAGAGAAGGGGGGCAGGGGGGGGGG
AGGCATACAGACACCACGCACGAGCTATTGTACGGTTGTAGATCTATCGG
TTGCGGGCGAGTCTTCGGAATTTTGCTTTGCTCCCGGCTTGAAAACTCTG
AGAGCTCATTTTGCGAGCGAACAACATCATCAAAGGGCATCCCAGGCATC
CCAGACAGACACAGGGCTGTAAAGTTTTTCGTCGTGTCGTCGTATCGTGA
GGGAAAGCGATGTCCTGATGGATGCGTCGCAAAATATCATCCAGCAGCAG
TTCAGTCGGAAACATCACATGTAAACGCAAAAACAGAGGGGGATAAATAT
AGGTGTCTCCGTTAGTATGGCGTGGCCCTAAAACTCCGTCCACCGCTGCC
TGTTTCATGCCCCCCCCGATACGCCCTGAAATGTCCAAGCAGTCGACAGT
TTCGACCGTCGGGGTACGGGTAGCCACGATCCGATCGAAGACGGGTGGAA
TCTGCTGGAGCAAGAAAAAGAGCGCGACGCCTCCGTCGAGTGGAAATCCC
GAAAGCAAGGAGAACGAGGGCAGCGAGAACAACCGTAGCAGCAGCGGCAG
CGACAAGAGCAGCGGTGCAAGGAAGGGAAACATCATCCCCTTGGCGTTCT
ACCCTAAGGCGAACGCACGGTACACGCTGGTGTACAGCCACGGCAACGCG
ACAGACATCGGGGCCATGCACGATCGGTGCGCCGGGATAGCGGAGGCCGT
GGGCATCAACGTCCTGGCGTACGACTACACCGGCTATGGCGCGGCCACGT
ACGTTGAAAGAAGTCTTGCAGGAGTTTGTGGAAGGCGTGCGCTGGGGGAT
TGTGTACGTAAGAACCTGAGCGGGTGACGTGGCGTTTCGTTCCGTTTTGG
CTCTTCCAGTTCCGTTTCGTGTCAATCATCCTTTCTCGTCTGTTCCATTT
TTGTGCCGTTCCATTTTTTTTCCGTTTCTTTTCGTAACGATTCATTTTTT
TTATTTCAATTTTTATGCGACATAATAACGTCGGCTGCAACAGCGGGTCC
CCGACGGAGGCGCAAACGTACAGAGACATTGAAGCGGTCTGCGCGTGGGC
AAGAAAACACGTTCTAAGCGAGGGAGATGATGGCAGCGGGAACACGGTGA
GGTTGGAAGGTCTCTGCTTATTTCCGCGCGGCGTTCTCGCGCTGGCGTGT
GCGTCCATACAGCCTCTTGTTTTCACTGCGCTGCTGCTGCTGCTGCTGTT
GCTCGTGGAAATCACTGATAAAGTTCTGCCGAGGGCGCGGTTTCGTGGAT
CCCGTCCAGACAACGTCATCCCAAGTTGCACTTACGTCGGATTTTCTGCG
GTATTTCTGTGGCCTTGGGCTGCAGCTTTTGTTTGGTGTATGAGCAGCAC
GCAGAGGGCAAGCAACATGGTACCCGCCCGCCCGAGGTCTACACACAGAC
ACGCGCGAGCATCCGATGGATGGAAAACAACCAGTCTTGAGGGGTTCGCA
GCGAAAAGCTGCGATGCAACCACATCGCTGGAAGTTTTTTTTACACAAAG
TATGCACTACAACTTATAGTATCTGCTGGCTCAGCGAACTTGGAAGGGCT
GTCCCTACTCGGAGTTAATAGTGAATAGCAGGCGTAATTCGATAATAACA
CGCCTTCTTTCTCGCCCTTGCGAGCGTGTTCTCGGGCTGATGATGACTAG
AGCTACAATTGAAGCACTTTTATCGCGTGTACCTCTGGCTTCCAACCCGA
GATTGCTTCACCGTGTTGTCGACAGACATTATATACCATGACACACCAAT
ATTACCTAATTGACCGTGTAAAGAAAAATAACCATCTCGATACTTTGAAG
ACATCTTACGAAAACATGTGGCTCATTCGTTTAATAACGCCCCCCCTTCC
CCGGGAAGTGTCGTTTTGCTTGCACCCCTCCCCTTTCCCCTACCCATTTC
ACGTCATCAAAATATGAAAGACACCATATTCACTCATTGCGATGGGGTTT
CGATTGCTTTCACGCTGCAGGGCCACGGTTTGATTTTGTACGGCCAAAGT
GTCGGAAGCGGTCCTACATGCTATATTGCGGGGGACAAGACCAAGGGAAA
TTTTGCAGGTCAGATCTTGTGCCTCTCCCCTCTCCCTGGTCTCCTTTTCT
GTTAAGAGCGGGCGGAAGGAGGGCGGGAGGGTGGGGAGAAGGGCAGACAC
ACAAAGGAGGCGTTTTTTGCTATGCCTTTGATTTATTTGCCTGTATGGTG
ACCAGCATCCCAAAACATGACTTCCACCCAAAAGAAGTTTTTGGGGGGGG
AAAGGGAATTTTTAATTTTTGTTATTTGTCTAATTATTTTCTCCAAACGA
GTTATTTCGAGTATTTTACGAGATAAGTTAAGTGTTCCAGGTTTGAAGAG
GGAGAGGATTCGTCTGGTTGGCTCAGATTTGCCCCATTTTTTTTTACAAA
AGTTGCATTCAAGTTATATGGCGCGACCGTAGGGGTTTCCACTTTGGACG
AGGCATTTTCACATTATAAGCAGATACCAAAACGGAGTCGATGTTACGGC
AACGCTCATAGTATGTGATTACATATGTCTTATCTTCTCATATCCGCACC
GCAGTCTTGTCTTTAGATACCCTTGAATGTCTCGACCAATCCACGAGAAA
CACTCCTGGAGATACTCCGACGTTTGAACATATATGGAGGGTCTATGAGA
AGTGACGAAGGGGGCGGAGGTCAACGGGTTGAACCGGCCAACCGTATTTG
CGTGTCCCTCTCTATAGTCATATATTATCTACTAAATATTTGCAAATTCG
CATACCAGGTATGTTACAAACTATGCCGCGGTTGCAGCCGTCGCGCTACA
TAGTTTATATGTATAAAATGTATATTTACTGGCTGTGCCGCCGTTGCAGG
CGTCGTGCTGCACAGCCCGATCCTCAGCGGCATGCGGGTCCTGACGGAAA
GCAGAGCCCTCTCGTGTCTCGACATCTACCCCAACGTCGACCGTATCGCG
AGAGTTCGATGTCCCGTGATGGTGTTGCACGGGATGAATGACGAAGAGGT
GAGGGGCCCGAGGGGGTTTCCACGTGAAGTGAGGGAGGTAGAGGGGATGG
AATGATGATAGCCCCCACCCTCCATTGACGTGGATCTACTACGTCCCAAT
CTAGAGAACGGGGATATAGCTATCTAGCACTGAAGGTTTATATGTTAGCA
ACAGAACATCGAGGAGGTGGGTGAATTGGCTCCGTTTTGCAATAATATTA
GACTAGAGAACTGTTTCATCAGCAGGCGCACGGGTGCAGGACTAATGACT
TAACAGAACGGTCAGCATTAACTCATTCTGAGCTTTTCGCAACTCTGTTA
ACACAACTCTATTGAATCGACGTTAGGGGAGGAGATATTTTCATGCCAGG
GGTAGGGACTTCTCAGGACAATGCCATCACCGTCGGCTTCGGTTACACGG
GACGCGCGCCGCCCGACCCTTTGCTCATCCTGTAGTCGTAGCTTTGGTCA
GGAAATGTCACCTTTTGCGTGTTTTACCCGAGCTTGAGGCATTATCAAGT
TGGATGTGGGGTGTACTGAACTATTATCAGGTACCGGGTCGCATCAGCGA
CGCCACAATTTCTACGCAACGGGGTGCTGGCCTCTCGGCCATGTGTTGAT
TGATCAAATCTACCTCCCTCTACCTCTCCCTAGCTCTTCAATAGTATGCT
GGCTTTGAGGGCACGAACCAAAAACATGGCCTCGTGTTCCCAGCAAGTGT
GGGAACCATCGCGAAAGCGACAACCATCTATCGACTGTATAGCTGTAAGC
GATCGAAAACCGCGCACTTTGAGGCGATGGCGAACGTTGAACCTCAAATG
CATTATCGCCAGTAGACCAGTTTCGAATGCCAAGACGGGTGGGCGCAGCG
GGAAACAGTAAACTTATACAACAATAGGCCACCGTTACGAGCCGCGCGAG
CTAGAAAAATCGAGCGGTTTGAAGCGTTAAACATGGAAAGGAAGTTTAGG
CGGCGGCAAGTAACCTAATACGCAAAGAACCACCGCTCTGTTGATGCGAC
GGGGCCGTCTTGCTCTTTTGGCGGTCGGCGGCATCTAACAGGTTCCCTGG
GAGCACGGCAAGGGAATGTTTGAGGCCGTCCCCGAAAAGTACAGGAGGCC
TCCGTGGTGGGTCCCGGACAGGGGCCACAATGACATCTGCGAGGGTCGAC
GACATCTTAGGTAAAATAAATAAATACCACCCCTCCTTTTTCTCCCCCCT
TACCCCCCCACGCCCCCACCCCCCCCCAGAAAGTATAAAGTATAAAGAGG
GGGAGCCGAAAAGGGGGTGGGGGGGGAAGGGAAACAAATTTCTTGTTTTG
TTCTGGTAGTCGACAATATTTTCCCGTTTTCTGTGTAGCGGGTGGGTGAT
CGCGTCTTCTGTACTCTGGCTTATGCTAGAGCAAGCGTCAACGGCTGGCT
GTTTTCCCGCCCTATCCAGCCGTTGCCATTCACGCTCATCACGGAGGAAG
GCAAGTATTAATAGGTGACTTTCTAATCAACGTGATCGCACCTCATGGTG
CGAAAGCCGTCGAGAGCTATCGCACGGAAAACATGGCCATCATATCGCCT
TCCCATTTGTATGTAATGTTTTGTTGTCTAAGTGTCGTAAGAGGTTGCCG
GTCATGTTGGTAAAAGCTCTGCGGATTTATTATTGCAATTATTATGGTAT
TTTACCCAACCCCCCCACTCGCCTCCTCGGAATGCACTGTTCTTTTCTCT
TATTTTTCCATTGCCCCCCAGGGAATTCCACGCGCGTCTAAAGGCGTTCG
TACAGTCACTGGACGATGAAACCGTCGCCCCCGCGGATCCATCAATCGGC
GTGACAACATCAGGCGAAACTCGTAGCGGCAATGAGGAGTCGAGAAGCTC
CCTTGAAGCCCTCAAGAGTCGTCATTCTTCAAAATCGACGACGGAAGCGG
TGGAGACGACGGAACCGAACGAGAGTGGGCCGAAGGAGACGGCAATCTGT
TCGAAGAGCGCTAGTGTTCGAGAAGAAGTGGCGTGAAAGAACTCCCCGCC
CTGTTTCTTTTTACAGCACGCAGTTTGCTACAAATGGCAGTATATCAGTG
TGTCCTACCAGTAGTCATGAACCATGATCGGTGAGGATCATTAAGATACT
CTTCCTACATGTGTACGTGAAGTGATTGGTTTTGTTCGTCTTGTTCGCTT
GTGGCGTGACTCCAGAAGTGAGGAGAAGCGGAAGGAGAAAAGAAAAAGAT
ATTTCATTTAGATAGGGTGGCGACAGAGATGTGTTTCTAAGAAGGGGGAA
GGGGGTTGAGGTAATTAAACTGGAAACCCCTCCTTTTGCTATTTTTCTAT
TTTCTTCAGTACTGAACCATGTTTTGATATGTCGGAGGAAAAGGGCGCCG
CCATCTCGATTGGAGGGTTGTTCTTAGAGGTGCAACAAATGCCGGAATTT
CATCGAGCTATCAGTAATAGCGTCGTTTTGAGGGTTTCCAACTTGTCTCC
AGCTGGGGGGGGGCGTTGAGCTGCCTCCATGAGTGACTGAACGTTTCATA
GGCGAGATAAAAGTGTGTTGACGAAAGCACAGGTGTTATTTTCGTGTGGA
TTAAGAGTACAGGTCGTTGTCCCTTGTCAGCGGTAGAAATACCAGCGACA
ATTTTGCAAAATATCGGAGACGGTACTGTAAAATCCGAGGCACGCTTAAT
CAATTCGAGAATTTCTTGTCGAATCCATCATAGACCGTTCATGTTTGTGT
TTGTGCGTGTGTGTGTGTTTGTGCGTGTGTGTGTGTGTGTGCATGTACGT
CTGCGCATGCGCGTGTATGTGTGTGTGTTTTTTTTTTTTCGATGCTTCTT
CATTCTCTATCAATAGGTGAAGTGGATTGTACGTGAACCTGTCTGGACTA
GGCTTGTTTTTTGCAGGGGACGACGCAGCCTTAGTTTTGCTCTCGAGATG
TGGCGCGTTTCTTCACCGGCGGAGAAAGCAAGCCGGGGACCGAGATAGAC
GACCCCTGTCTTACTTCCAACCACTGCTTTCTGTTTACAGTACGATAACG
TGAGAACTGGCATGACATCGTATGTGCGCGGGAGAAGGGTGTACTATTTC
GAATCGGGGGCTTACGACGTCAGTCACCATTTGGTTTGATTGACAGCACA
GCACCGTACTGTGTAGTTTGGTCCTTGAACTCCTTGTCCATGACAGATGC
GGTGTCGGTTTCCTTTTTTTGTTAATTTATTTCGATAAAGAATATGTGAA
TGTTTTTTGTTTTTGTTTTGTGGGACTGAGACTTGTAACGTGTTTTTTTA
CAAGATTTTGCTGTGAGTTACAGCACATCTCATGACTGACTCCCTTACTC
GACAGCGCTACTCGGAACTGGAGCTTTCATGCGTAAGTTATCGCATGGCT
TACCGGCCTTTAGGGTATACTTACCGTATTCCATGTACAATGCGCGCAAT
GCCGTATTGTGATTCTTTTTGAGAGGTTCTTTTCGTCCGGTATACGTCCT
ACAGACCACACCATTCAGTGGGCGTAAAGATACAAGGCCGGCCTTAAGAA
GACCATAAAATTGCTCGCTACTTCGATTCTAAAATAAAGGCCCGTTTGGC
GCTGGATCCCACAATTCGGCATTGTTTAAAAATCACAGGCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig10383:1043..7883-

>mRNA_P-canaliculata_contig10383.528.1 ID=mRNA_P-canaliculata_contig10383.528.1|Name=mRNA_P-canaliculata_contig10383.528.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at P-canaliculata_contig10383:1043..7883- (Pelvetia canaliculata dioecious)
ATGCACGATCGGTGCGCCGGGATAGCGGAGGCCGTGGGCATCAACGTCCT
GGCGTACGACTACACCGGCTATGGCGCGGCCACATGCACGATCGGTGCGC
CGGGATAGCGGAGGCCGTGGGCATCAACGTCCTGGCGTACGACTACACCG
GCTATGGCGCGGCCACCGGGTCCCCGACGGAGGCGCAAACGTACAGAGAC
ATTGAAGCGGTCTGCGCGTGGGCAAGAAAACACGTTCTAAGCGAGGGAGA
TGATGGCAGCGGGAACACGCGGGTCCCCGACGGAGGCGCAAACGTACAGA
GACATTGAAGCGGTCTGCGCGTGGGCAAGAAAACACGTTCTAAGCGAGGG
AGATGATGGCAGCGGGAACACGGGCCACGGTTTGATTTTGTACGGCCAAA
GTGTCGGAAGCGGTCCTACATGCTATATTGCGGGGGACAAGACCAAGGGA
AATTTTGCAGGGCCACGGTTTGATTTTGTACGGCCAAAGTGTCGGAAGCG
GTCCTACATGCTATATTGCGGGGGACAAGACCAAGGGAAATTTTGCAGGC
GTCGTGCTGCACAGCCCGATCCTCAGCGGCATGCGGGTCCTGACGGAAAG
CAGAGCCCTCTCGTGTCTCGACATCTACCCCAACGTCGACCGTATCGCGA
GAGTTCGATGTCCCGTGATGGTGTTGCACGGGATGAATGACGAAGAGGCG
TCGTGCTGCACAGCCCGATCCTCAGCGGCATGCGGGTCCTGACGGAAAGC
AGAGCCCTCTCGTGTCTCGACATCTACCCCAACGTCGACCGTATCGCGAG
AGTTCGATGTCCCGTGATGGTGTTGCACGGGATGAATGACGAAGAGGTTC
CCTGGGAGCACGGCAAGGGAATGTTTGAGGCCGTCCCCGAAAAGTACAGG
AGGCCTCCGTGGTGGGTCCCGGACAGGGGCCACAATGACATCTGCGAGGG
TCGACGACATCTTAGGTTCCCTGGGAGCACGGCAAGGGAATGTTTGAGGC
CGTCCCCGAAAAGTACAGGAGGCCTCCGTGGTGGGTCCCGGACAGGGGCC
ACAATGACATCTGCGAGGGTCGACGACATCTTAGGGAATTCCACGCGCGT
CTAAAGGCGTTCGTACAGTCACTGGACGATGAAACCGTCGCCCCCGCGGA
TCCATCAATCGGCGTGACAACATCAGGCGAAACTCGTAGCGGCAATGAGG
AGTCGAGAAGCTCCCTTGAAGCCCTCAAGAGTCGTCATTCTTCAAAATCG
ACGACGGAAGCGGTGGAGACGACGGAACCGAACGAGAGTGGGCCGAAGGA
GACGGCAATCTGTTCGAAGAGCGCTAGTGTTCGAGAAGAAGTGGCGTGAG
GAATTCCACGCGCGTCTAAAGGCGTTCGTACAGTCACTGGACGATGAAAC
CGTCGCCCCCGCGGATCCATCAATCGGCGTGACAACATCAGGCGAAACTC
GTAGCGGCAATGAGGAGTCGAGAAGCTCCCTTGAAGCCCTCAAGAGTCGT
CATTCTTCAAAATCGACGACGGAAGCGGTGGAGACGACGGAACCGAACGA
GAGTGGGCCGAAGGAGACGGCAATCTGTTCGAAGAGCGCTAGTGTTCGAG
AAGAAGTGGCGTGA
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