mRNA_P-canaliculata_contig103776.521.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103776.521.1
Unique NamemRNA_P-canaliculata_contig103776.521.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.640e-32
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRPLGE +HGT  GEV+HFDYL +G          D ++G+ Y+LV++DD+S++V L+P  +CT+ + A+ +L W  +LG PEV+VSD A HFKN  +  +   LG    FSVA S WSNGT E
Sbjct: 1350 PRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCE 1473          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A2P4X9C5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X9C5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.690e-24
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G +L  TE  EV+H+D+L LGDS    AY+LV+ D +S +  L P A+ T+ VAA  ++ W ++ GTP+  +SD   HF+NE +  +A +L    +FS  YS W +GTVE
Sbjct:  131 PRPYGPLLTPTERNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHAIFGTPKTLMSDQGSHFRNEMINHLATRLKIEQKFSPVYSPWLDGTVE 244          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.760e-24
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    4 RPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            RP G     T   + LHFDYL +G++  G  YVLVL DD++ FV L    S TS+VA  +I++W ++ G PEV++SDG  HFKN  +K +A +L   H   +AY  W NGTVE
Sbjct: 1019 RPHGNTWSATRRNQGLHFDYLFMGETWKGSKYVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRLKVQHNIVLAYCPWRNGTVE 1131          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 104 bits (259), Expect = 1.090e-23
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRPLG  +HG    EV+H D+L +G       Y+L+L DD+SS++ L P    T+  AA ++  W+ V G  E  VSD   HFKN  +K +  +L   H F+ AYS W+NG++E
Sbjct:  343 PRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHFTTAYSPWANGSIE 456          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.650e-23
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G +L  T+  EV+H+D+L LGDS    AY+LV+ D +S +  L P A+ T+ VAA  ++ W +  GTP+  +SD   HF+NE +  +AA+L    +FS  YS W NGTVE
Sbjct:  287 PRPYGPLLTPTKRNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHARFGTPKTLMSDQGSHFRNEMINHLAARLKIEPKFSPVYSPWLNGTVE 400          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A2P4Y8M4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8M4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.360e-23
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G +   TE  EVLH+D+L LGDS    AY+LVL D +S +  L P A+ T+ VAA  ++ W +  GT +  +SD   HF+NE +  +AA+L    +FS  YS W NGTVE
Sbjct:  941 PRPYGPLFTPTERNEVLHWDFLSLGDSYGDSAYLLVLKDGLSHYYELFPCATPTAYVAAEVLMMWDARFGTSKTLMSDQGSHFRNEMINQLAARLKIEPKFSPVYSPWLNGTVE 1054          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A329RCS9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCS9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.580e-22
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G +L  TE  EV+H+++L LGD     AY+LV+ D +S F  L P ++ T+ VA+ ++L W +  GTP++ +SD   HF+NET+  +A +L    RF+  YS W N TVE
Sbjct:  237 PRPYGPLLTPTERNEVVHWEFLFLGDGYGNSAYLLVVKDGLSHFCELFPCSTPTAYVASEALLMWHARYGTPKMLLSDQGSHFRNETMAHLATRLKIELRFTPVYSPWLNSTVE 350          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A225V0K3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.610e-22
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G     T   E+LH+D+L +GDS D   Y+LVL D +S F  L    S TS +AA+++L+W    G P++ +SD   HFKN  +  +  +L     F VAYS W NG+VE
Sbjct:  100 PRPWGPTYQATRRNEMLHYDFLYMGDSADQTQYILVLKDGLSHFCELVACDSPTSSIAAQALLDWSKRFGAPDMLMSDTGSHFKNLLVNELCQRLQVEQHFVVAYSPWINGSVE 213          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.720e-22
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G +L  TE  EV+H+D+L LG+     AY+LV+ D +S F  L P A+    VAA ++L W +  G P+  +SD   HF+NE ++ +A++L     F+  YS W NGTVE
Sbjct:  111 PRPYGPLLTPTERNEVVHWDFLSLGEGYGDPAYLLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNFTPVYSPWLNGTVE 224          
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6A3YUA4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YUA4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.240e-21
Identity = 53/114 (46.49%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
            PRP G     TE  E+LH DYL LGDS     YVLVL D ++ F  L    S TS VAA ++++W    G P V VSD   HFK+E +  V  KL       VAY+ W NGTVE
Sbjct:  115 PRPWGPTYDATERNELLHVDYLYLGDSMGACQYVLVLKDGLTHFCELVACDSPTSVVAATALVDWWKRFGAPSVLVSDQGSHFKSEFIAQVCKKLNIDQSLVVAYAPWINGTVE 228          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE3.640e-3248.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4X9C5_9STRA1.690e-2443.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4YXI7_9STRA1.760e-2446.02Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
R7Q542_CHOCR1.090e-2341.23Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A225VA87_9STRA3.650e-2344.74Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4Y8M4_9STRA5.360e-2345.61Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A329RCS9_9STRA3.580e-2242.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A225V0K3_9STRA8.610e-2242.11Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A3JAA2_9STRA8.720e-2242.11Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A6A3YUA4_9STRA1.240e-2146.49Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103776contigP-canaliculata_contig103776:118..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue5.6e-21
Seed eggNOG ortholog67593.Physo138264
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.916211-CDS-P-canaliculata_contig103776:117..4591622815607.916211-CDS-P-canaliculata_contig103776:117..459Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103776 118..459 -
1693494163.484831-CDS-P-canaliculata_contig103776:117..4591693494163.484831-CDS-P-canaliculata_contig103776:117..459Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103776 118..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103776.521.1prot_P-canaliculata_contig103776.521.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103776 118..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103776.521.1

>prot_P-canaliculata_contig103776.521.1 ID=prot_P-canaliculata_contig103776.521.1|Name=mRNA_P-canaliculata_contig103776.521.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=114bp
PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPA
ASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHR
FSVAYSSWSNGTVE
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mRNA from alignment at P-canaliculata_contig103776:118..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103776.521.1 ID=mRNA_P-canaliculata_contig103776.521.1|Name=mRNA_P-canaliculata_contig103776.521.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at P-canaliculata_contig103776:118..459- (Pelvetia canaliculata dioecious)
CCCCGTCCGTTGGGTGAGATACTTCATGGGACGGAGGTCGGAGAAGTTCT TCACTTCGACTATCTTAAATTGGGCGACAGCGACGATGGGTATGCGTACG TGCTCGTACTTGTTGACGACGTAAGCTCGTTCGTGTCGTTGCAACCGGCG GCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTGGAGTGGGTCTC AGTTTTGGGCACTCCCGAGGTTTTCGTGAGCGATGGAGCACCGCACTTCA AAAATGAGACGCTGAAGTTGGTTGCTGCAAAACTGGGAGCCTCGCATCGT TTTTCGGTGGCATACTCCTCGTGGAGCAATGGTACTGTGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103776:118..459-

>mRNA_P-canaliculata_contig103776.521.1 ID=mRNA_P-canaliculata_contig103776.521.1|Name=mRNA_P-canaliculata_contig103776.521.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at P-canaliculata_contig103776:118..459- (Pelvetia canaliculata dioecious)
CCCCGTCCGTTGGGTGAGATACTTCATGGGACGGAGGTCGGAGAAGTTCT
TCACTTCGACTATCTTAAATTGGGCGACAGCGACGATGGGTATGCGTACG
TGCTCGTACTTGTTGACGACGTAAGCTCGTTCGTGTCGTTGCAACCGGCG
GCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTGGAGTGGGTCTC
AGTTTTGGGCACTCCCGAGGTTTTCGTGAGCGATGGAGCACCGCACTTCA
AAAATGAGACGCTGAAGTTGGTTGCTGCAAAACTGGGAGCCTCGCATCGT
TTTTCGGTGGCATACTCCTCGTGGAGCAATGGTACTGTGGAGCCCCGTCC
GTTGGGTGAGATACTTCATGGGACGGAGGTCGGAGAAGTTCTTCACTTCG
ACTATCTTAAATTGGGCGACAGCGACGATGGGTATGCGTACGTGCTCGTA
CTTGTTGACGACGTAAGCTCGTTCGTGTCGTTGCAACCGGCGGCGTCTTG
CACAAGTGAAGTTGCTGCAAGAAGTATTCTGGAGTGGGTCTCAGTTTTGG
GCACTCCCGAGGTTTTCGTGAGCGATGGAGCACCGCACTTCAAAAATGAG
ACGCTGAAGTTGGTTGCTGCAAAACTGGGAGCCTCGCATCGTTTTTCGGT
GGCATACTCCTCGTGGAGCAATGGTACTGTGGAG
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