mRNA_P-canaliculata_contig103776.521.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 128 bits (322), Expect = 3.640e-32 Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRPLGE +HGT GEV+HFDYL +G D ++G+ Y+LV++DD+S++V L+P +CT+ + A+ +L W +LG PEV+VSD A HFKN + + LG FSVA S WSNGT E
Sbjct: 1350 PRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCE 1473
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A2P4X9C5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X9C5_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.690e-24 Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G +L TE EV+H+D+L LGDS AY+LV+ D +S + L P A+ T+ VAA ++ W ++ GTP+ +SD HF+NE + +A +L +FS YS W +GTVE
Sbjct: 131 PRPYGPLLTPTERNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHAIFGTPKTLMSDQGSHFRNEMINHLATRLKIEQKFSPVYSPWLDGTVE 244
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.760e-24 Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 RPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
RP G T + LHFDYL +G++ G YVLVL DD++ FV L S TS+VA +I++W ++ G PEV++SDG HFKN +K +A +L H +AY W NGTVE
Sbjct: 1019 RPHGNTWSATRRNQGLHFDYLFMGETWKGSKYVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRLKVQHNIVLAYCPWRNGTVE 1131
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 104 bits (259), Expect = 1.090e-23 Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRPLG +HG EV+H D+L +G Y+L+L DD+SS++ L P T+ AA ++ W+ V G E VSD HFKN +K + +L H F+ AYS W+NG++E
Sbjct: 343 PRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHFTTAYSPWANGSIE 456
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA) HSP 1 Score: 102 bits (255), Expect = 3.650e-23 Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G +L T+ EV+H+D+L LGDS AY+LV+ D +S + L P A+ T+ VAA ++ W + GTP+ +SD HF+NE + +AA+L +FS YS W NGTVE
Sbjct: 287 PRPYGPLLTPTKRNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHARFGTPKTLMSDQGSHFRNEMINHLAARLKIEPKFSPVYSPWLNGTVE 400
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A2P4Y8M4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8M4_9STRA) HSP 1 Score: 102 bits (254), Expect = 5.360e-23 Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G + TE EVLH+D+L LGDS AY+LVL D +S + L P A+ T+ VAA ++ W + GT + +SD HF+NE + +AA+L +FS YS W NGTVE
Sbjct: 941 PRPYGPLFTPTERNEVLHWDFLSLGDSYGDSAYLLVLKDGLSHYYELFPCATPTAYVAAEVLMMWDARFGTSKTLMSDQGSHFRNEMINQLAARLKIEPKFSPVYSPWLNGTVE 1054
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A329RCS9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCS9_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.580e-22 Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G +L TE EV+H+++L LGD AY+LV+ D +S F L P ++ T+ VA+ ++L W + GTP++ +SD HF+NET+ +A +L RF+ YS W N TVE
Sbjct: 237 PRPYGPLLTPTERNEVVHWEFLFLGDGYGNSAYLLVVKDGLSHFCELFPCSTPTAYVASEALLMWHARYGTPKMLLSDQGSHFRNETMAHLATRLKIELRFTPVYSPWLNSTVE 350
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A225V0K3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K3_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 8.610e-22 Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G T E+LH+D+L +GDS D Y+LVL D +S F L S TS +AA+++L+W G P++ +SD HFKN + + +L F VAYS W NG+VE
Sbjct: 100 PRPWGPTYQATRRNEMLHYDFLYMGDSADQTQYILVLKDGLSHFCELVACDSPTSSIAAQALLDWSKRFGAPDMLMSDTGSHFKNLLVNELCQRLQVEQHFVVAYSPWINGSVE 213
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 8.720e-22 Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G +L TE EV+H+D+L LG+ AY+LV+ D +S F L P A+ VAA ++L W + G P+ +SD HF+NE ++ +A++L F+ YS W NGTVE
Sbjct: 111 PRPYGPLLTPTERNEVVHWDFLSLGEGYGDPAYLLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNFTPVYSPWLNGTVE 224
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Match: A0A6A3YUA4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YUA4_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.240e-21 Identity = 53/114 (46.49%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 1 PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKLGASHRFSVAYSSWSNGTVE 342
PRP G TE E+LH DYL LGDS YVLVL D ++ F L S TS VAA ++++W G P V VSD HFK+E + V KL VAY+ W NGTVE
Sbjct: 115 PRPWGPTYDATERNELLHVDYLYLGDSMGACQYVLVLKDGLTHFCELVACDSPTSVVAATALVDWWKRFGAPSVLVSDQGSHFKSEFIAQVCKKLNIDQSLVVAYAPWINGTVE 228 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103776.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig103776.521.1 >prot_P-canaliculata_contig103776.521.1 ID=prot_P-canaliculata_contig103776.521.1|Name=mRNA_P-canaliculata_contig103776.521.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=114bp PRPLGEILHGTEVGEVLHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAback to top mRNA from alignment at P-canaliculata_contig103776:118..459- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig103776.521.1 ID=mRNA_P-canaliculata_contig103776.521.1|Name=mRNA_P-canaliculata_contig103776.521.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at P-canaliculata_contig103776:118..459- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig103776:118..459- >mRNA_P-canaliculata_contig103776.521.1 ID=mRNA_P-canaliculata_contig103776.521.1|Name=mRNA_P-canaliculata_contig103776.521.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at P-canaliculata_contig103776:118..459- (Pelvetia canaliculata dioecious)back to top |