mRNA_P-canaliculata_contig10375.517.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10375.517.1
Unique NamemRNA_P-canaliculata_contig10375.517.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10375.517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10375contigP-canaliculata_contig10375:6844..8362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1268
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10375.517.1prot_P-canaliculata_contig10375.517.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10375 7522..8319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.703669-UTR-P-canaliculata_contig10375:6843..69691622815607.703669-UTR-P-canaliculata_contig10375:6843..6969Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10375 6844..6969 -
1693494163.403672-UTR-P-canaliculata_contig10375:6843..69691693494163.403672-UTR-P-canaliculata_contig10375:6843..6969Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10375 6844..6969 -
1622815607.714982-UTR-P-canaliculata_contig10375:7220..75211622815607.714982-UTR-P-canaliculata_contig10375:7220..7521Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10375 7221..7521 -
1693494163.412946-UTR-P-canaliculata_contig10375:7220..75211693494163.412946-UTR-P-canaliculata_contig10375:7220..7521Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10375 7221..7521 -
1622815607.7363737-UTR-P-canaliculata_contig10375:8319..83621622815607.7363737-UTR-P-canaliculata_contig10375:8319..8362Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10375 8320..8362 -
1693494163.4306347-UTR-P-canaliculata_contig10375:8319..83621693494163.4306347-UTR-P-canaliculata_contig10375:8319..8362Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10375 8320..8362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.724826-CDS-P-canaliculata_contig10375:7521..83191622815607.724826-CDS-P-canaliculata_contig10375:7521..8319Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10375 7522..8319 -
1693494163.421853-CDS-P-canaliculata_contig10375:7521..83191693494163.421853-CDS-P-canaliculata_contig10375:7521..8319Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10375 7522..8319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10375.517.1

>prot_P-canaliculata_contig10375.517.1 ID=prot_P-canaliculata_contig10375.517.1|Name=mRNA_P-canaliculata_contig10375.517.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=266bp
MKTARYGAQHALDGMVYVRTRKQCRTDGCGKEPSFGVAGTETAEFCAQHA
RGGMIDIRARKCRVEACGKIPSFGVAGTKTAEYCKNHAPGGMVNAMSKKQ
CRTEGCGKGPSLGVAGTKTARYCAQHALDGMVYVRSRKQCRTDSCGKEPS
FGVAGTKTAEFCAQYALGGMIDVRSRKCRVEACGKIPSFGVAGTKTAEYC
KHHAPGGMVNVCSRKNRTGGKKPSLTEANTNPAEFCPQLASFGIAGIRKA
EYCAQYTRPICGVGG*
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mRNA from alignment at P-canaliculata_contig10375:6844..8362-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10375.517.1 ID=mRNA_P-canaliculata_contig10375.517.1|Name=mRNA_P-canaliculata_contig10375.517.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1519bp|location=Sequence derived from alignment at P-canaliculata_contig10375:6844..8362- (Pelvetia canaliculata dioecious)
AACCGAAGGCTGCGGCAAGATTCCGTCGTTCGGAGTGGCAGGTATGAAAA
CGGCGAGGTACGGTGCACAGCACGCCCTGGACGGGATGGTTTACGTCAGG
ACCAGAAAGCAATGCAGGACCGACGGCTGTGGCAAGGAGCCATCGTTCGG
AGTGGCAGGTACGGAAACGGCGGAATTCTGTGCGCAGCACGCCCGTGGCG
GGATGATTGACATCCGCGCCAGAAAGTGTAGAGTCGAAGCCTGCGGCAAG
ATTCCGTCGTTTGGAGTGGCAGGTACGAAAACGGCGGAATATTGCAAAAA
CCACGCGCCGGGCGGAATGGTCAACGCCATGAGCAAAAAGCAGTGCAGGA
CCGAAGGCTGTGGCAAGGGGCCATCTTTGGGAGTGGCAGGTACAAAAACG
GCGAGGTACTGTGCACAGCACGCCCTTGACGGGATGGTTTACGTCAGGAG
CAGAAAGCAGTGCAGGACTGACAGCTGTGGTAAGGAGCCATCGTTCGGAG
TGGCAGGTACGAAAACGGCGGAGTTCTGTGCGCAATACGCCCTTGGCGGG
ATGATCGACGTCCGCAGCAGAAAGTGTAGAGTCGAAGCCTGCGGCAAGAT
TCCGTCGTTTGGAGTGGCAGGTACGAAAACGGCGGAATACTGCAAACACC
ACGCACCGGGCGGAATGGTCAACGTCTGCAGCAGAAAGAATAGAACCGGA
GGCAAAAAGCCGTCGTTAACAGAGGCCAACACAAACCCGGCAGAGTTCTG
TCCACAGCTCGCGTCATTCGGCATTGCCGGGATAAGAAAGGCGGAGTACT
GTGCACAGTACACGAGGCCAATATGCGGTGTAGGAGGATAGAGGGGGGGG
AGGAATGGTCCACATCACTCCGAGAACAAAACCATTGGTAATGCAAATCC
GAGTGGCACCAAACAGAAAACCCTTCATCCGTTTCCCGCCCTGGCAAACC
CACCGTCGAGGGGTAGCAGTGGCTCTCGTAAGCGAGTACGGCACCCAGAC
ATTACCTCTACGGCTTCAAAGCGAGCTGTCACACTAAAGTCAGCTAAAGG
AGCGCTGACCAAGCTGGAGATCGACGGGCGAAAATTTCCCGTCAAACGAG
ATCCTTCTGTAAAGACGGATGTGCAGCTCTCCTTGTAGTCAGGTACACTA
CACGTGACCGCAAACCTATCTGCGGAAATATCAATGTTAATGCTGCAGTT
ACTATGGTACGATTCTGACTACCCGAGATTATTCCTTGTGTTTTGTCGGG
AGGCTGCGAGGTTCAGCTCAAAAGCCCCTGTCCCTCTTGAGACCCTAAAG
ACCCTCCAGCTGCAGCATTTCTTAACGAAATACGATACTCGTGCTTACAC
CTACACCCCTGTGCTGTCTTCCTCGGCCTGTCTTTGAACTCAGGTGCTGT
GGCCATGAGCGTGGTAATGATATCGTTACTACAGCCGCCGAGACTCTGCT
AGGTGTGGTGAGGGTCCTACCGTGCTTATTTCCGGAGCAACTGCATGCAT
TTTCCTTGGTATCACCTAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10375:6844..8362-

>mRNA_P-canaliculata_contig10375.517.1 ID=mRNA_P-canaliculata_contig10375.517.1|Name=mRNA_P-canaliculata_contig10375.517.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at P-canaliculata_contig10375:6844..8362- (Pelvetia canaliculata dioecious)
ATGAAAACGGCGAGGTACGGTGCACAGCACGCCCTGGACGGGATGGTTTA
CGTCAGGACCAGAAAGCAATGCAGGACCGACGGCTGTGGCAAGGAGCCAT
CGTTCGGAGTGGCAGGTACGGAAACGGCGGAATTCTGTGCGCAGCACGCC
CGTGGCGGGATGATTGACATCCGCGCCAGAAAGTGTAGAGTCGAAGCCTG
CGGCAAGATTCCGTCGTTTGGAGTGGCAGGTACGAAAACGGCGGAATATT
GCAAAAACCACGCGCCGGGCGGAATGGTCAACGCCATGAGCAAAAAGCAG
TGCAGGACCGAAGGCTGTGGCAAGGGGCCATCTTTGGGAGTGGCAGGTAC
AAAAACGGCGAGGTACTGTGCACAGCACGCCCTTGACGGGATGGTTTACG
TCAGGAGCAGAAAGCAGTGCAGGACTGACAGCTGTGGTAAGGAGCCATCG
TTCGGAGTGGCAGGTACGAAAACGGCGGAGTTCTGTGCGCAATACGCCCT
TGGCGGGATGATCGACGTCCGCAGCAGAAAGTGTAGAGTCGAAGCCTGCG
GCAAGATTCCGTCGTTTGGAGTGGCAGGTACGAAAACGGCGGAATACTGC
AAACACCACGCACCGGGCGGAATGGTCAACGTCTGCAGCAGAAAGAATAG
AACCGGAGGCAAAAAGCCGTCGTTAACAGAGGCCAACACAAACCCGGCAG
AGTTCTGTCCACAGCTCGCGTCATTCGGCATTGCCGGGATAAGAAAGGCG
GAGTACTGTGCACAGTACACGAGGCCAATATGCGGTGTAGGAGGATAGAT
GAAAACGGCGAGGTACGGTGCACAGCACGCCCTGGACGGGATGGTTTACG
TCAGGACCAGAAAGCAATGCAGGACCGACGGCTGTGGCAAGGAGCCATCG
TTCGGAGTGGCAGGTACGGAAACGGCGGAATTCTGTGCGCAGCACGCCCG
TGGCGGGATGATTGACATCCGCGCCAGAAAGTGTAGAGTCGAAGCCTGCG
GCAAGATTCCGTCGTTTGGAGTGGCAGGTACGAAAACGGCGGAATATTGC
AAAAACCACGCGCCGGGCGGAATGGTCAACGCCATGAGCAAAAAGCAGTG
CAGGACCGAAGGCTGTGGCAAGGGGCCATCTTTGGGAGTGGCAGGTACAA
AAACGGCGAGGTACTGTGCACAGCACGCCCTTGACGGGATGGTTTACGTC
AGGAGCAGAAAGCAGTGCAGGACTGACAGCTGTGGTAAGGAGCCATCGTT
CGGAGTGGCAGGTACGAAAACGGCGGAGTTCTGTGCGCAATACGCCCTTG
GCGGGATGATCGACGTCCGCAGCAGAAAGTGTAGAGTCGAAGCCTGCGGC
AAGATTCCGTCGTTTGGAGTGGCAGGTACGAAAACGGCGGAATACTGCAA
ACACCACGCACCGGGCGGAATGGTCAACGTCTGCAGCAGAAAGAATAGAA
CCGGAGGCAAAAAGCCGTCGTTAACAGAGGCCAACACAAACCCGGCAGAG
TTCTGTCCACAGCTCGCGTCATTCGGCATTGCCGGGATAAGAAAGGCGGA
GTACTGTGCACAGTACACGAGGCCAATATGCGGTGTAGGAGGATAG
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