mRNA_P-canaliculata_contig103691.512.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103691.512.1
Unique NamemRNA_P-canaliculata_contig103691.512.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: UPI00047E53F9 (iron-sulfur cluster assembly accessory protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00047E53F9)

HSP 1 Score: 205 bits (521), Expect = 3.100e-66
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:   13 TTRTRRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIP 363
            TTRTRRPRPKLVTLTD AAARV EIL ERGEGYLRVGV NGGCAGMEY+MDYV+E  KFDEVVEDK VQIVVDAKAVLF+LGSVVDYEVD++SSKFTFKNP QTDACGCGESVTI+P
Sbjct:    4 TTRTRRPRPKLVTLTDAAAARVREILDERGEGYLRVGVTNGGCAGMEYVMDYVSEIEKFDEVVEDKDVQIVVDAKAVLFILGSVVDYEVDVMSSKFTFKNPNQTDACGCGESVTIVP 120
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: A0A420WK28_9PROT (Iron-sulfur cluster assembly protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WK28_9PROT)

HSP 1 Score: 197 bits (501), Expect = 3.700e-63
Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   16 TRTRRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIP 363
            TR+RRPRPKLVTLTD AA +V  ILAER +GYLRVGVKNGGCAGMEY+MDYV E  KFDEVVED GV+IVVDAKAVLF+LGSVVDYEVDILSSKFTFKNP QTDACGCGESVTI+P
Sbjct:    8 TRSRRPRPKLVTLTDAAAEQVKSILAERDKGYLRVGVKNGGCAGMEYIMDYVPEIEKFDEVVEDNGVKIVVDAKAVLFILGSVVDYEVDILSSKFTFKNPNQTDACGCGESVTIVP 123
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: A0A8J3G219_9PROT (Fe-S_biosyn domain-containing protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G219_9PROT)

HSP 1 Score: 191 bits (486), Expect = 7.380e-61
Identity = 93/115 (80.87%), Postives = 105/115 (91.30%), Query Frame = 1 
Query:   25 RRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIPVI 369
            RR RPKLVTLTD AA +V EILAERGEG+LRVGVKNGGCAGMEY+MDYV+EPAKFDEVVEDKGV+IVVDAKAVLF+LG+ VD+E  +L SKFTF+NP QTDACGCGESVTI+P +
Sbjct:   12 RRARPKLVTLTDAAADQVREILAERGEGFLRVGVKNGGCAGMEYMMDYVSEPAKFDEVVEDKGVKIVVDAKAVLFILGATVDHETTLLHSKFTFRNPNQTDACGCGESVTIVPAL 126
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: UPI00167385CE (iron-sulfur cluster assembly accessory protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167385CE)

HSP 1 Score: 189 bits (479), Expect = 9.180e-60
Identity = 93/110 (84.55%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:   40 KLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIPVI 369
            KLVTLTD+AAARV EIL ERGEGYLRVGV NGGCAGMEYLMDYV EP KFDEVVEDKGVQIVVD+KAVLFLLGSVVDYE  +L S+FTF NP QTDACGCGESVTI+P +
Sbjct:   19 KLVTLTDDAAARVREILDERGEGYLRVGVTNGGCAGMEYLMDYVAEPEKFDEVVEDKGVQIVVDSKAVLFLLGSVVDYETTLLHSRFTFTNPNQTDACGCGESVTIVPAV 128
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: A0A2G2GK78_9PROT (FeS assembly scaffold SufA n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GK78_9PROT)

HSP 1 Score: 187 bits (476), Expect = 1.850e-59
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:   25 RRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIPV 366
            R+PRPKLVTLTD AA RV EILAER  GYLRVGVKNGGCAGMEY+MDYV E  KFDEVVEDK VQIVVD+KAVLFLLGSVVDYE  ++SS+FTFKNP QTDACGCGESVTI P+
Sbjct:    3 RKPRPKLVTLTDAAAERVREILAERERGYLRVGVKNGGCAGMEYIMDYVAEIEKFDEVVEDKDVQIVVDSKAVLFLLGSVVDYETTMMSSRFTFKNPNQTDACGCGESVTITPM 116
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: A0A520XJE2_9ACTN (Iron-sulfur cluster assembly accessory protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XJE2_9ACTN)

HSP 1 Score: 187 bits (475), Expect = 2.890e-59
Identity = 94/112 (83.93%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:   28 RPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIP 363
            RPRPKLVTLTD AAARV EILAER +GYLRVGVKNGGCAGMEY MDYV +  KFDEVVED GV IVVD+KAVLFLLGSVVDYE  I+ SKFTFKNP QTDACGCGESVTI P
Sbjct:    4 RPRPKLVTLTDAAAARVQEILAERDQGYLRVGVKNGGCAGMEYTMDYVADIEKFDEVVEDNGVTIVVDSKAVLFLLGSVVDYETTIMDSKFTFKNPNQTDACGCGESVTITP 115
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: A0A2D7IV23_9PROT (FeS assembly scaffold SufA n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D7IV23_9PROT)

HSP 1 Score: 185 bits (470), Expect = 1.620e-58
Identity = 91/116 (78.45%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:   25 RRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIPVIE 372
            RRPRPKLVTLTD AA RV EI+  +G GYLRVGVKNGGCAGMEY+MDY  +P  FDE+VED GV+IVVDAKAVLFLLGSVVDYEV  L +KF F NP QTDACGCGESVTIIPV+E
Sbjct:    3 RRPRPKLVTLTDAAAERVREIMERKGSGYLRVGVKNGGCAGMEYVMDYADQPEAFDEIVEDNGVKIVVDAKAVLFLLGSVVDYEVTPLHAKFVFNNPNQTDACGCGESVTIIPVVE 118
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: UPI000A039315 (iron-sulfur cluster assembly accessory protein n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI000A039315)

HSP 1 Score: 185 bits (469), Expect = 2.230e-58
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:   25 RRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIP 363
            RRPRP+LVTLTD AA RV EI++E+G GYLRVGVKNGGCAGMEY+MDYVT P KFDEVVEDKGV+IVVDAKAVLFLLGS+VDYE   L  KF F+NP +TDACGCGESVTI+P
Sbjct:    3 RRPRPQLVTLTDAAATRVQEIMSEKGAGYLRVGVKNGGCAGMEYVMDYVTAPEKFDEVVEDKGVKIVVDAKAVLFLLGSIVDYESTPLHEKFVFRNPNETDACGCGESVTIMP 115
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: A0A7V5U1N4_9PROT (Iron-sulfur cluster assembly accessory protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7V5U1N4_9PROT)

HSP 1 Score: 183 bits (465), Expect = 1.060e-57
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 1 
Query:   25 RRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIPV 366
            RRPRPKLVTLTD AA RV EIL+E+G G+LRVGVKNGGCAGMEYLMDYV +P  FDE+VED GVQIVVDAKAVLFLLGS +DYE   L S+F F NP QTDACGCGESVTI+PV
Sbjct:    6 RRPRPKLVTLTDRAAERVREILSEKGRGFLRVGVKNGGCAGMEYLMDYVEKPEPFDEIVEDNGVQIVVDAKAVLFLLGSEIDYETTPLHSRFVFHNPNQTDACGCGESVTIVPV 119
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BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Match: UPI0008DB169B (iron-sulfur cluster assembly accessory protein n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008DB169B)

HSP 1 Score: 182 bits (463), Expect = 1.830e-57
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 1 
Query:   25 RRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGMEYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKFTFKNPQQTDACGCGESVTIIP 363
            RRPRPKLVTLTD AAARV EI++E+G G+LRVGV NGGCAGMEY+MDYV  P   DE+VEDKGV+IVVDAKAVLFLLGS+VDYE  +L  KFTF NP QTDACGCGESVTIIP
Sbjct:    3 RRPRPKLVTLTDAAAARVGEIMSEKGAGFLRVGVTNGGCAGMEYVMDYVEAPEPLDEIVEDKGVKIVVDAKAVLFLLGSIVDYETTLLHEKFTFTNPNQTDACGCGESVTIIP 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103691.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00047E53F93.100e-6688.03iron-sulfur cluster assembly accessory protein n=1... [more]
A0A420WK28_9PROT3.700e-6385.34Iron-sulfur cluster assembly protein n=1 Tax=Litor... [more]
A0A8J3G219_9PROT7.380e-6180.87Fe-S_biosyn domain-containing protein n=1 Tax=Algi... [more]
UPI00167385CE9.180e-6084.55iron-sulfur cluster assembly accessory protein n=1... [more]
A0A2G2GK78_9PROT1.850e-5982.46FeS assembly scaffold SufA n=1 Tax=Robiginitomacul... [more]
A0A520XJE2_9ACTN2.890e-5983.93Iron-sulfur cluster assembly accessory protein n=2... [more]
A0A2D7IV23_9PROT1.620e-5878.45FeS assembly scaffold SufA n=2 Tax=Hyphomonadaceae... [more]
UPI000A0393152.230e-5879.65iron-sulfur cluster assembly accessory protein n=1... [more]
A0A7V5U1N4_9PROT1.060e-5778.95Iron-sulfur cluster assembly accessory protein n=1... [more]
UPI0008DB169B1.830e-5778.76iron-sulfur cluster assembly accessory protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103691contigP-canaliculata_contig103691:181..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score205.3
Seed ortholog evalue1.7e-50
Seed eggNOG ortholog1121948.AUAC01000002_gene1343
Preferred nameiscA
KEGG koko:K13628,ko:K15724,ko:K22063
GOsGO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0031163,GO:0031974,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the HesB IscA family
EggNOG OGs1RH6T@1224,2UBWJ@28211,43XVC@69657,COG0316@1,COG0316@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.3266473-CDS-P-canaliculata_contig103691:180..5581622815607.3266473-CDS-P-canaliculata_contig103691:180..558Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103691 181..558 +
1693494163.1730108-CDS-P-canaliculata_contig103691:180..5581693494163.1730108-CDS-P-canaliculata_contig103691:180..558Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103691 181..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103691.512.1prot_P-canaliculata_contig103691.512.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103691 181..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103691.512.1

>prot_P-canaliculata_contig103691.512.1 ID=prot_P-canaliculata_contig103691.512.1|Name=mRNA_P-canaliculata_contig103691.512.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=126bp
MTANTTRTRRPRPKLVTLTDEAAARVSEILAERGEGYLRVGVKNGGCAGM
EYLMDYVTEPAKFDEVVEDKGVQIVVDAKAVLFLLGSVVDYEVDILSSKF
TFKNPQQTDACGCGESVTIIPVIEA*
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mRNA from alignment at P-canaliculata_contig103691:181..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103691.512.1 ID=mRNA_P-canaliculata_contig103691.512.1|Name=mRNA_P-canaliculata_contig103691.512.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at P-canaliculata_contig103691:181..558+ (Pelvetia canaliculata dioecious)
ATGACTGCCAATACCACCCGTACCCGCCGTCCGCGCCCGAAACTCGTCAC
CCTGACGGATGAGGCCGCTGCGCGCGTGAGTGAAATTCTGGCTGAGCGCG
GTGAGGGCTACCTTCGCGTTGGCGTTAAGAACGGCGGCTGCGCGGGGATG
GAATATCTCATGGATTACGTGACGGAGCCCGCGAAGTTTGACGAAGTGGT
CGAAGACAAAGGCGTGCAAATCGTTGTGGACGCGAAAGCCGTGCTTTTCC
TGCTCGGCTCCGTCGTCGATTATGAGGTCGATATCCTCTCGTCCAAATTC
ACCTTCAAAAACCCGCAGCAGACAGATGCCTGTGGGTGCGGGGAAAGCGT
GACGATTATTCCCGTGATTGAGGCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103691:181..558+

>mRNA_P-canaliculata_contig103691.512.1 ID=mRNA_P-canaliculata_contig103691.512.1|Name=mRNA_P-canaliculata_contig103691.512.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at P-canaliculata_contig103691:181..558+ (Pelvetia canaliculata dioecious)
ATGACTGCCAATACCACCCGTACCCGCCGTCCGCGCCCGAAACTCGTCAC
CCTGACGGATGAGGCCGCTGCGCGCGTGAGTGAAATTCTGGCTGAGCGCG
GTGAGGGCTACCTTCGCGTTGGCGTTAAGAACGGCGGCTGCGCGGGGATG
GAATATCTCATGGATTACGTGACGGAGCCCGCGAAGTTTGACGAAGTGGT
CGAAGACAAAGGCGTGCAAATCGTTGTGGACGCGAAAGCCGTGCTTTTCC
TGCTCGGCTCCGTCGTCGATTATGAGGTCGATATCCTCTCGTCCAAATTC
ACCTTCAAAAACCCGCAGCAGACAGATGCCTGTGGGTGCGGGGAAAGCGT
GACGATTATTCCCGTGATTGAGGCGTGAATGACTGCCAATACCACCCGTA
CCCGCCGTCCGCGCCCGAAACTCGTCACCCTGACGGATGAGGCCGCTGCG
CGCGTGAGTGAAATTCTGGCTGAGCGCGGTGAGGGCTACCTTCGCGTTGG
CGTTAAGAACGGCGGCTGCGCGGGGATGGAATATCTCATGGATTACGTGA
CGGAGCCCGCGAAGTTTGACGAAGTGGTCGAAGACAAAGGCGTGCAAATC
GTTGTGGACGCGAAAGCCGTGCTTTTCCTGCTCGGCTCCGTCGTCGATTA
TGAGGTCGATATCCTCTCGTCCAAATTCACCTTCAAAAACCCGCAGCAGA
CAGATGCCTGTGGGTGCGGGGAAAGCGTGACGATTATTCCCGTGATTGAG
GCGTGA
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