mRNA_P-canaliculata_contig103655.508.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103655.508.1
Unique NamemRNA_P-canaliculata_contig103655.508.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103655.508.1 vs. uniprot
Match: A0A2S8EPF0_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium WD3A24 TaxID=2086263 RepID=A0A2S8EPF0_9RHOB)

HSP 1 Score: 58.5 bits (140), Expect = 1.610e-7
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:    4 KRLCLHIGFPKTGTTSIQTVLCRSSDHLIASGHWYPRLGELWNRQRVGH--SHHSLFRALTLPEENDVAAERRIAEADLANVLEEFDGNSELRQLIISHESFLENVRPNFESLRKATTNFSSTVTAYVR 384
            KRL +HIG  KTGTTSIQ  L ++   L A   WY R     NR    H   H SL  AL    EN      R AE++++ +L EF+  S    L++S E F E  R +   LR+  T+F   V  ++R
Sbjct:    2 KRLVIHIGTHKTGTTSIQEALEKNRARLAAGSVWYART----NRDPHAHLPKHSSLAHAL---RENTA----RSAESEISLLLAEFE-ESGCETLVLSAEGFSELRRESLAPLRELATDFRIDVVCFLR 118
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BLAST of mRNA_P-canaliculata_contig103655.508.1 vs. uniprot
Match: UPI001C448A4B (hypothetical protein n=1 Tax=Alteromonas antoniana TaxID=2803813 RepID=UPI001C448A4B)

HSP 1 Score: 53.1 bits (126), Expect = 1.260e-5
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1 
Query:    1 KKRLCLHIGFPKTGTTSIQTVLCRSSDHLIASGHWYPRLGELWNRQRVGHSHHSLFRALTLPEENDVAAERRIAEADLANVLEEFDGNSELRQLIISHESFLENVRPNFESLRKATTNFSSTVTAYVR 384
            K +L LHIG+P++G+TSIQT      + L+  G  YP+ G     Q VGH H   +  L+ P +    A       +L   +   D N +   + +S E+F+     N+E+LR A T+F   + A VR
Sbjct:    4 KLKLYLHIGWPRSGSTSIQTAFYNKREELLLHGILYPKSG----LQHVGH-HQWAYPLLSSPVDWIKPASITALLQELKEEVSHCDSNVD--SVFLSSEAFI--YCNNYENLRNAFTDFDIEIIAIVR 122
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BLAST of mRNA_P-canaliculata_contig103655.508.1 vs. uniprot
Match: D9PIR2_9ZZZZ (Uncharacterized protein n=1 Tax=sediment metagenome TaxID=749907 RepID=D9PIR2_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 2.360e-5
Identity = 40/105 (38.10%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    7 RLCLHIGFPKTGTTSIQTVLCRSSDHLIASGHWYPRLGELWNRQRVGHSHHSLFRALTLPEENDVAAERRIAEADLANVLEEFDGNSELRQLIISHE--SFLENV 315
            ++ LH+G PKTGTTSIQ  L  S + +  SG WYP+ G         H HH+L  AL          +  +AE  LA+++EE         ++IS E  SFL+NV
Sbjct:    4 KVLLHVGLPKTGTTSIQYALTESRERIQHSGVWYPKAGISGGT----HGHHALAWAL-------YDGDYDLAERLLASMMEE-SVLCNAAMMVISTERFSFLDNV 96
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BLAST of mRNA_P-canaliculata_contig103655.508.1 vs. uniprot
Match: UPI0019AE104B (Uncharacterized protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI0019AE104B)

HSP 1 Score: 51.6 bits (122), Expect = 4.470e-5
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    4 KRLCLHIGFPKTGTTSIQTVLCRSSDHLIASGHWYPRLGELWNRQR-VGHSHHSLFRALT--LPEENDVAAERRIAEADLANVLEEFDGNSELRQLIISHESFLENVR 318
            K+L LHIG PKTGT+SIQ  L R++D L A G  YPR G     +R +  +HHSL  A    L ++   A  +R+   ++A       G+     ++IS ESF   VR
Sbjct:    4 KQLILHIGRPKTGTSSIQHFLARNADALGAEGAIYPRAGRALPGERGLPVAHHSLAAACAGKLDDKAAFAEMKRVFTTEIA-------GHD---TVVISSESFSNLVR 101
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BLAST of mRNA_P-canaliculata_contig103655.508.1 vs. uniprot
Match: A0A844AST7_9RHOB (Uncharacterized protein n=1 Tax=Tritonibacter aquimaris TaxID=2663379 RepID=A0A844AST7_9RHOB)

HSP 1 Score: 51.6 bits (122), Expect = 4.550e-5
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1 
Query:    4 KRLCLHIGFPKTGTTSIQTVLCRSSDHLIASGHWYPRLGELWNRQRVGHSHHSLFRALTLPEENDVAAERRIAEADLANVLEEFDGNSELRQLIISHESF--LENVRPNFESLRKATTNFSSTVTAYVR 384
            KRL LHIGF KTG+TSIQT L  ++D L A G  YP        QRV H    L  A++      +A ++R         L       +   L++S ESF  L+    N   ++    ++ +T+ AY+R
Sbjct:    2 KRLILHIGFNKTGSTSIQTDLVLNADALQAQGVLYPNDASAPYMQRVQHL--PLATAMSERRITWMAPKKRATLDQAYPSLHAALKQQQFETLLLSSESFGGLDMTPQNISWIKDQFADYHTTILAYIR 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103655.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2S8EPF0_9RHOB1.610e-737.98Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
UPI001C448A4B1.260e-532.81hypothetical protein n=1 Tax=Alteromonas antoniana... [more]
D9PIR2_9ZZZZ2.360e-538.10Uncharacterized protein n=1 Tax=sediment metagenom... [more]
UPI0019AE104B4.470e-538.89Uncharacterized protein n=1 Tax=Sphingomonadaceae ... [more]
A0A844AST7_9RHOB4.550e-533.33Uncharacterized protein n=1 Tax=Tritonibacter aqui... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103655contigP-canaliculata_contig103655:9..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.0997531-CDS-P-canaliculata_contig103655:8..3921622815607.0997531-CDS-P-canaliculata_contig103655:8..392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103655 9..392 -
1693494163.0503285-CDS-P-canaliculata_contig103655:8..3921693494163.0503285-CDS-P-canaliculata_contig103655:8..392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103655 9..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103655.508.1prot_P-canaliculata_contig103655.508.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103655 9..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103655.508.1

>prot_P-canaliculata_contig103655.508.1 ID=prot_P-canaliculata_contig103655.508.1|Name=mRNA_P-canaliculata_contig103655.508.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=128bp
KKRLCLHIGFPKTGTTSIQTVLCRSSDHLIASGHWYPRLGELWNRQRVGH
SHHSLFRALTLPEENDVAAERRIAEADLANVLEEFDGNSELRQLIISHES
FLENVRPNFESLRKATTNFSSTVTAYVR
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mRNA from alignment at P-canaliculata_contig103655:9..392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103655.508.1 ID=mRNA_P-canaliculata_contig103655.508.1|Name=mRNA_P-canaliculata_contig103655.508.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at P-canaliculata_contig103655:9..392- (Pelvetia canaliculata dioecious)
AAGAAGAGACTGTGTCTACACATCGGTTTTCCAAAAACCGGTACAACTTC
AATTCAAACAGTTTTATGTCGTTCCAGCGACCACTTAATCGCAAGCGGCC
ATTGGTATCCTCGGCTCGGTGAATTATGGAATCGACAGCGGGTTGGCCAC
AGTCACCATAGCCTATTTCGGGCACTGACTTTGCCAGAGGAAAACGACGT
TGCGGCGGAGCGTCGAATCGCTGAAGCTGATTTGGCTAACGTTCTGGAGG
AGTTTGACGGCAACTCTGAGCTTCGCCAGCTAATTATTTCTCATGAAAGT
TTTTTGGAAAATGTTCGGCCAAACTTTGAGTCGCTTCGAAAAGCAACCAC
TAATTTCTCCTCGACGGTCACTGCCTACGTGCGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig103655:9..392-

>mRNA_P-canaliculata_contig103655.508.1 ID=mRNA_P-canaliculata_contig103655.508.1|Name=mRNA_P-canaliculata_contig103655.508.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at P-canaliculata_contig103655:9..392- (Pelvetia canaliculata dioecious)
AAGAAGAGACTGTGTCTACACATCGGTTTTCCAAAAACCGGTACAACTTC
AATTCAAACAGTTTTATGTCGTTCCAGCGACCACTTAATCGCAAGCGGCC
ATTGGTATCCTCGGCTCGGTGAATTATGGAATCGACAGCGGGTTGGCCAC
AGTCACCATAGCCTATTTCGGGCACTGACTTTGCCAGAGGAAAACGACGT
TGCGGCGGAGCGTCGAATCGCTGAAGCTGATTTGGCTAACGTTCTGGAGG
AGTTTGACGGCAACTCTGAGCTTCGCCAGCTAATTATTTCTCATGAAAGT
TTTTTGGAAAATGTTCGGCCAAACTTTGAGTCGCTTCGAAAAGCAACCAC
TAATTTCTCCTCGACGGTCACTGCCTACGTGCGCAAGAAGAGACTGTGTC
TACACATCGGTTTTCCAAAAACCGGTACAACTTCAATTCAAACAGTTTTA
TGTCGTTCCAGCGACCACTTAATCGCAAGCGGCCATTGGTATCCTCGGCT
CGGTGAATTATGGAATCGACAGCGGGTTGGCCACAGTCACCATAGCCTAT
TTCGGGCACTGACTTTGCCAGAGGAAAACGACGTTGCGGCGGAGCGTCGA
ATCGCTGAAGCTGATTTGGCTAACGTTCTGGAGGAGTTTGACGGCAACTC
TGAGCTTCGCCAGCTAATTATTTCTCATGAAAGTTTTTTGGAAAATGTTC
GGCCAAACTTTGAGTCGCTTCGAAAAGCAACCACTAATTTCTCCTCGACG
GTCACTGCCTACGTGCGC
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