mRNA_P-canaliculata_contig10365.506.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10365.506.1
Unique NamemRNA_P-canaliculata_contig10365.506.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10365.506.1 vs. uniprot
Match: D7FQ56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ56_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.220e-38
Identity = 84/156 (53.85%), Postives = 108/156 (69.23%), Query Frame = 2 
Query:    2 EYIQLMVLANQL----MAIAFASI-----MEVEWNESGMWFFSNLGSYLGSFLLSMEIQIMNILYKKVTIWTTSRGNLRTDTVFEDVLIAALAV------------LAVFQPFVTECTYTSCLDSLCQSLAIIFYTRLLIAKTFEVYLTGFYMRKQ 406
            EY QL+V+AN L    MA+A A I     +E+EW+ES   F ++ GSY+ SFLLS+EIQ+MN LYKKV +WTT R N RTDT+FED+L+A LAV            +A  QPF T C+Y SCLDSLCQSLAIIF TRL+IA + E++L  + M+K+
Sbjct:  349 EYYQLLVVANTLVVSMMALAVALIAVIFVLEIEWDESSSTFLNDYGSYVASFLLSLEIQVMNFLYKKVAVWTTKRENHRTDTIFEDMLVAKLAVFQFVNSYASLFYIAFVQPFTTGCSYDSCLDSLCQSLAIIFCTRLIIANSVEIFLPRYLMKKK 504
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10365.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ56_ECTSI1.220e-3853.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10365contigP-canaliculata_contig10365:1837..7197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue9.6e-32
Seed eggNOG ortholog2880.D7FQ56
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size622
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10365.506.1prot_P-canaliculata_contig10365.506.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10365 1853..7197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.886429-UTR-P-canaliculata_contig10365:1836..18521622815606.886429-UTR-P-canaliculata_contig10365:1836..1852Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10365 1837..1852 +
1693494162.915567-UTR-P-canaliculata_contig10365:1836..18521693494162.915567-UTR-P-canaliculata_contig10365:1836..1852Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10365 1837..1852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.8968081-CDS-P-canaliculata_contig10365:1852..19461622815606.8968081-CDS-P-canaliculata_contig10365:1852..1946Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 1853..1946 +
1693494162.9308002-CDS-P-canaliculata_contig10365:1852..19461693494162.9308002-CDS-P-canaliculata_contig10365:1852..1946Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 1853..1946 +
1622815606.9070458-CDS-P-canaliculata_contig10365:2738..28991622815606.9070458-CDS-P-canaliculata_contig10365:2738..2899Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 2739..2899 +
1693494162.9439766-CDS-P-canaliculata_contig10365:2738..28991693494162.9439766-CDS-P-canaliculata_contig10365:2738..2899Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 2739..2899 +
1622815606.921791-CDS-P-canaliculata_contig10365:6170..63141622815606.921791-CDS-P-canaliculata_contig10365:6170..6314Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 6171..6314 +
1693494162.95823-CDS-P-canaliculata_contig10365:6170..63141693494162.95823-CDS-P-canaliculata_contig10365:6170..6314Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 6171..6314 +
1622815606.9350457-CDS-P-canaliculata_contig10365:6990..71971622815606.9350457-CDS-P-canaliculata_contig10365:6990..7197Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 6991..7197 +
1693494162.9708471-CDS-P-canaliculata_contig10365:6990..71971693494162.9708471-CDS-P-canaliculata_contig10365:6990..7197Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10365 6991..7197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10365.506.1

>prot_P-canaliculata_contig10365.506.1 ID=prot_P-canaliculata_contig10365.506.1|Name=mRNA_P-canaliculata_contig10365.506.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=202bp
MVLANQLMAIAFASIMEVEWNESGMWFFSNLGSYLGSFLLSMEIQIMNIL
YKKVTIWTTSRGNLRTDTVFEDVLIAALAVLAVFQPFVTECTYTSCLDSL
CQSLAIIFYTRLLIAKTFEVYLTGFYMRKQMREHHPHQQHQHQHQQSHLP
YQRGVDVSGNPIRGSAAPCGGIDAPGVGGQGLSQHRRGPSHPKGSRYGSS
VG
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mRNA from alignment at P-canaliculata_contig10365:1837..7197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10365.506.1 ID=mRNA_P-canaliculata_contig10365.506.1|Name=mRNA_P-canaliculata_contig10365.506.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5361bp|location=Sequence derived from alignment at P-canaliculata_contig10365:1837..7197+ (Pelvetia canaliculata dioecious)
GGAGTACATACAGCTGATGGTGCTGGCCAACCAGCTGATGGCCATCGCAT
TTGCCAGCATCATGGAGGTGGAATGGAACGAAAGCGGCATGTGGTTCTTC
AGCAACCTGGGTAAGAGAGGAAAAGGCGTTTCTTCCTCCCCAAGTGTCTC
CCTTCGTTCGTTAGACACCATTGCCGTCTGCTGATTGTATACTATTAATA
CTGTGCCGACAGTTGATACAATGTCATTACGCTTCCGCGGAGGGGGAAGC
GTATACGTACTCCACCTTCCCATTTTTATCTTGTTTCATCCAATGCTTTG
AAGCTATATAATAGCGCTATAAATGTATTAATAGTCCAAGTCTATACGGA
GGGGAGGGTACTGGCGCGGAAAATTGCATTTTGTTTAGAGTCCTCGGCGA
CAGACAGCTCATGGTACTGTACCGCATCTACTGTACTGCTAAACCTAGTG
ATACTAAGAGACGAAAGAAGCATGTCGCCTCTTTTATTAACAGTCTCGAC
GCAAAAGCAAGTCCTACCCACTTTACTCCGGTGTAGCGGTGGGGTATCAC
AAGGAAGCGCAGACAGGCTCTCATGATTTCCCCTTCCCTTCATCTCGGGG
GTCCGGGCACGCTGCGGCAATCACTTCAAGCTGTCTCGGGTGCTCTGTTG
CTTTAGGGCTCCGATTGAGTAGCTCTACCGTAGTGGTGCAGCAGCGGTGA
GTGAGACGTACCAACAGCAAAAGAAGCCCGTCGTTGTGGTGACTTACATC
TAGAGCGGTCGAAATAAAACGTGTTGTGGCTGATATTTTCACCCACCCCC
CACCCGTTACGCCTTCTCCCTACTTTTTTTTTCATTTCTCTGTCTCTCTC
TCTCTCTCTCTCTCTCGCTCTTCTTTTTCTGTTTCTGGTGTGGCGACGAA
AGGATCGTACCTGGGATCGTTCCTGCTGTCGATGGAGATCCAGATTATGA
ACATTTTGTACAAGAAAGTAACGATTTGGACGACCTCAAGGGGGAACCTC
CGAACGGACACGGTCTTCGAGGACGTCCTCATCGCTGCGCTGGCCGTCTT
GGCCGTCTTCCAGGTCAAATTTCAATCGTGTGTGTGTATGTGTATGTGTA
TGTGTGTGTATTTATTAAACTGAACATGACTGCGCAACCCGGCCCTGTCA
TCCGATAATACGAAGTATTGATAGTCATTCTATATCACTTGCATGGTCCT
CTCAAGATGGGATCAATGATTCTTGTTCCGAAAAATCTGATCATATGCGT
CATAGGGTCTTTCCGTGTGTATGTGTGTGTTTACTAAATTGCGCATAGCC
GCGCAATCTGGCGCTGTCATCCTAGTCATCGCATGCCACTCGCATTGGTC
CTCCAATGGGGGGACCAATGATACTGTACTTGTTACCAAAGCCTCTGATC
AGATGCAACAAAGGGAACACACGCTCTCTCCTTGTACAGAATAGTTCTTC
CTTAAGCCCTGAGTACCTTGCGCTTCCCTCCCTGCTTCCTTTCTATTGCT
ATTGCTATTCTTTGGATTATCTGGGTCGGCAGCTACTGAACCAACACTTT
TTTTTCTACGCTTTTTCCTATTTCCGCCCAAGTCTCCTCCATTTCCCACA
TCGCGTTGACAACTCTTGTGGAGTTTCTTGCGCTTTTTCGCCTCTCCTCC
GCCCTCCCCGATCTTGTCCCTCGTCTCCCGTCCCCGGGCCCTGATCCTCC
GCATGATGTGACGGCCGTCCCCGTCCTCGTTACCGTCTCCGCTACTGCTT
CCATTTCGGTCTCCGTCCCCGCCCCCGCCCCCGCCCCCGTTCCCATCTTG
CGTTCGTTCGCTCGCCTCCATCCCTCGGACCCGTTTATCATCTCGGTACA
ATGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTTAATTAAATTTCACCTCATCGCGCAATAGAAATCCGGTTTCGA
TTCCAGGCAAGGGATCCATTATTTGGAAGTTTTTAGTCAACCGTTCCTTT
ACGCTCGGGCTTTCGTCAGGGTGATTTCCATTCTCACTCATGAGTCCATT
CGATATTATACTCAGCTTTGAGTCTCTGTTTCTAACTACTCCGACATGAT
AAGTACTACATGTACCAGTATTTAGCTAGTCGTATTAGCTGGAAGGATTA
ATGTTCACCTGGATGCTTTGTAGTGGCAATACTGGGAGAGAAGATCCCTT
GGCTTTGGGCTATTGGAGGTGCTGTCCAAGCCACTGGCGTGGTTGGACCG
GCTTGGTAAGGCAGCGGATGTCAGTTCAGGCATCCACTTATGTTTAACGC
CCACCCTCACGTGGCTAAACACCAGATCCTTGGGTTTCCATAGCGTTGGT
ATGCGATACTAACCCATGGAGCCTGACCTACCAGCCACGAAAGCACGTCC
GTCTAGCGCCACATACCACAACATTACGTTATTTTCTCTTTCCGCCCAAG
TCTCCCCGTTTCCCACATCGCGTCTATAACGCTTTTAGGGTTTCCTCCAC
AACCCCGTCCCTCGCGTGCGGTTCCTGGACTGACTCTGGTCCTCTGCGTG
ATGCGACGATCTCGCTGGGCGTTGGGTCTTGCGGCTGTAGTTACTGGTTA
CTCGTTGGCGTCGCCGCGCGCGCGCGCGTGTATGTGTATTAAAATGCAAA
TAACCGCGCAATCTGGCCCTGTAATCTACTCAATATATGCTACTGCATAT
AACCCACCCAGGGGTTACTTTTCGTGAACATAGTTTTGGCTGGAGATGCG
CGTGCATCCAGCCACAACTTCTCTCCACACTACCACGGCTCTCGGCCGGA
GCACCACTCCCTCGAAATCAACTACAACGACCTGCCCGGAGAAAATGTTG
GGACGAAAACGCGGGAAACGGGGGCCAAGCTTATTGCCCCCCTCCAACAC
ATGGTGAGTAAAGCTAGTCGCTCACCGCTTTGCTCAAGAAATGAAGAGGA
GAATTCGACAAGCAGGGAGCACCACGGCCGATTCTCCTTGTAACCTCCCC
ATCCTAAACCGTGCGACGTACTGCAGCAGTGGTATCGTCATTCCGCCCCC
CTTTCAACACCCAATCGTCGTGTGTCCCGTCTGGATCCGCACATATTTCC
TCTCCACGCAAGAAAATCCCCGCAGGCCATAATAGGCCCCGGGGTAAAAC
ACCAACCATAAGTCTTGCGCTGGGCGCGAATCGCGTGGGTAAGGAGAGAG
TCAAGGGTAAAGCTAGTCGGATACAAAGTCGCCGAATAGGGTCTGCGCTC
GTAAGTGTACGCCGGAACACACAGTACCGTGAGCTAAAAATGTTGTCATG
ATTGTTGTACCCACGAATGGACCCAGCTATTGTCTTGAAACTCCTCCTCC
CCTCTCGTCCCAAAACATATCATGACGCAAAAAAGGCCAGCAGACTATCT
AATATTAATAGGGGGATCGCCGCGACACAGTGCACCGACTGCTATTGGCT
ACTGCTGTTCCTATCGCCAAACCACACCTTTCCGCCACTAGTAGCCCCGC
TTCGAGCTCTGCCCTCTCGCTCCACCGTGCTTGTTGGCCCGTTGTTGTCC
CGAGCAGGCTCTATCCATGCTATCGACCCCAATCAAAATATCCCACTAGG
GCCACACAGGCAACACGTAAATTCATGTCCCATGGAAGGGGAAGGGAGCT
AGAGGCCAACCCCTCCCGACCACCCGGGTGGCTACAGGCCAATCCCTGCC
GACCTCCCGGGTGGCCTGTAGCCACCCGGGAGGCTACTATAATACTACAA
CATAATATTAGCAGTTGTCCTTTGCTGCGAGATTCCGGCTTGGTGTGTGT
GTGTGGTACTATTAATAGCTTAATAGCTTCTCTATTTCTTCGCTTCTCGC
TTGACGGTGAGTATGCGTCCCTATGGTGCACTATAATATTAATAAGCAGC
TTCTCTGTTCACCGCTCATCGATACCAGACCAGGTACCAGTACAACTTTC
TTCATTGATACGCTTTACTTAACAATCTTAATGATTAGCGTCGACTGTGA
AACGTACGGAGTGCAGCGGGTGAGTTTATAATTATATAAGTAATGCACTA
TACCTGCGATGGGGAATGGCCGACGTCGATGGCTTGCGACCATCCTTTCA
ATGTCGGCCGTCAAGCTTGTCGTTTTAGGAACACGTTATCTTGGTCCGAA
CGACCCCGAAGCTCCCATCGTTCCGTGCTACCCCAGCCGAATAATTTCTG
CGAACTCTTTGCGGCTCTTGTCGCATGTCTCTACGATTAATATTACCAAA
TGTATTAACGCTGCCTTTTTTTCCCCAACGGTTCTTCTGATGTTTGCCAC
GTACGCCTCGCTGTACTACATCGCCTTCGCCCAGCCCTTCGTCACGGAGT
GCACGTACACTTCGTGCCTCGACAGCCTCTGTCAGTCGCTGGCCATCATC
TTCTACACGCGTCTGTTAATCGCTAAAACTTTTGAGGTCTACCTGACGGG
GTTCTACATGCGCAAGCAAATGAGGGAGGTGAGGGAGAATAACTCAAGAG
TCCCCCGTGAGAGATTCACCAGAAACATGTTCGGTGAAGGTGGTGTTTGT
GTGGAGGTGCGCATTTTAGGAGTTCATGCTTGTACTGCGTACGCACACCC
CAAACCAAAACACCATTCCGTTCCTCCACGATACAGTATTATTAGTTGTG
CTACTCTCCGTTCTGTCCCACCTTATCAGCACTCGCCCCATCCCCGCGTC
TTGGTAGTGTATCCTTCCCTTTTGCTCCGGTAAGCACAGCATCCGAGGCG
ATGTTTCTCCATCCTAATACTGATCGCGGCGCTTTTTTCATGAGCGCTTT
GATCTGGCTAGAAGGTTTGCTGACCCGATACGATGTAACAAGTGTCGACC
TCGCTCAAGGCTATATTTTTATAGTCCGTCGATTGTTGGCTCCCCGAATC
CTTTCCCGACCTCTTCGCTGCTCGTCCATTCCCGACACATTTTTCTTTTC
TTGATTCGCTTCCACAGTAGTTTGAGGTTTCTAACCCCCCTGCACTCGAG
CCCGCCCACTGAGCTATCCTTATCTAATAACCCTTGTCATATCTTCTTTT
CTCTTCTCTTGGTCTCCATCTTCTTCCCCTCCGCTCTCCCTTCTCTCTCG
TTGCACATTATGTTGCCTATTCCACTCGTGTATGGTCTGTCGCATTTCCA
TCAGCACCATCCCCACCAACAGCACCAGCACCAGCACCAGCAATCGCACT
TGCCGTATCAGCGAGGTGTGGACGTTTCGGGGAACCCGATACGCGGTTCG
GCTGCTCCCTGTGGAGGCATTGACGCCCCGGGAGTGGGGGGGCAGGGGCT
GTCTCAGCACCGCCGCGGCCCATCTCACCCCAAGGGTTCTCGGTACGGCT
CAAGCGTGGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10365:1837..7197+

>mRNA_P-canaliculata_contig10365.506.1 ID=mRNA_P-canaliculata_contig10365.506.1|Name=mRNA_P-canaliculata_contig10365.506.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at P-canaliculata_contig10365:1837..7197+ (Pelvetia canaliculata dioecious)
ATGGTGCTGGCCAACCAGCTGATGGCCATCGCATTTGCCAGCATCATGGA
GGTGGAATGGAACGAAAGCGGCATGTGGTTCTTCAGCAACCTGGATGGTG
CTGGCCAACCAGCTGATGGCCATCGCATTTGCCAGCATCATGGAGGTGGA
ATGGAACGAAAGCGGCATGTGGTTCTTCAGCAACCTGGGATCGTACCTGG
GATCGTTCCTGCTGTCGATGGAGATCCAGATTATGAACATTTTGTACAAG
AAAGTAACGATTTGGACGACCTCAAGGGGGAACCTCCGAACGGACACGGT
CTTCGAGGACGTCCTCATCGCTGCGCTGGCCGTCTTGGCCGTCTTCCAGG
ATCGTACCTGGGATCGTTCCTGCTGTCGATGGAGATCCAGATTATGAACA
TTTTGTACAAGAAAGTAACGATTTGGACGACCTCAAGGGGGAACCTCCGA
ACGGACACGGTCTTCGAGGACGTCCTCATCGCTGCGCTGGCCGTCTTGGC
CGTCTTCCAGCCCTTCGTCACGGAGTGCACGTACACTTCGTGCCTCGACA
GCCTCTGTCAGTCGCTGGCCATCATCTTCTACACGCGTCTGTTAATCGCT
AAAACTTTTGAGGTCTACCTGACGGGGTTCTACATGCGCAAGCAAATGAG
GGAGCCCTTCGTCACGGAGTGCACGTACACTTCGTGCCTCGACAGCCTCT
GTCAGTCGCTGGCCATCATCTTCTACACGCGTCTGTTAATCGCTAAAACT
TTTGAGGTCTACCTGACGGGGTTCTACATGCGCAAGCAAATGAGGGAGCA
CCATCCCCACCAACAGCACCAGCACCAGCACCAGCAATCGCACTTGCCGT
ATCAGCGAGGTGTGGACGTTTCGGGGAACCCGATACGCGGTTCGGCTGCT
CCCTGTGGAGGCATTGACGCCCCGGGAGTGGGGGGGCAGGGGCTGTCTCA
GCACCGCCGCGGCCCATCTCACCCCAAGGGTTCTCGGTACGGCTCAAGCG
TGGGCCACCATCCCCACCAACAGCACCAGCACCAGCACCAGCAATCGCAC
TTGCCGTATCAGCGAGGTGTGGACGTTTCGGGGAACCCGATACGCGGTTC
GGCTGCTCCCTGTGGAGGCATTGACGCCCCGGGAGTGGGGGGGCAGGGGC
TGTCTCAGCACCGCCGCGGCCCATCTCACCCCAAGGGTTCTCGGTACGGC
TCAAGCGTGGGC
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