mRNA_P-canaliculata_contig103642.505.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103642.505.1
Unique NamemRNA_P-canaliculata_contig103642.505.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103642.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103642contigP-canaliculata_contig103642:2..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog395961.Cyan7425_1022
KEGG koko:K00477
KEGG Pathwayko04146,map04146
EggNOG free text desc.dioxygenase activity
EggNOG OGsCOG5285@1,COG5285@2
EC1.14.11.18
COG Functional cat.Q
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.8552017-CDS-P-canaliculata_contig103642:1..4001622815606.8552017-CDS-P-canaliculata_contig103642:1..400Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103642 2..400 +
1693494162.8993213-CDS-P-canaliculata_contig103642:1..4001693494162.8993213-CDS-P-canaliculata_contig103642:1..400Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103642 2..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103642.505.1prot_P-canaliculata_contig103642.505.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103642 2..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103642.505.1

>prot_P-canaliculata_contig103642.505.1 ID=prot_P-canaliculata_contig103642.505.1|Name=mRNA_P-canaliculata_contig103642.505.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=133bp
VPLTNLNHLSSAICILPASLDSNYEKCLAEIQIDSLQDVRSLQGKRGSVF
CWTTQLAHWGTRQSSFGPPRMSVGYYLKRTEAENLEEEHPLEFSNSLPLT
QRLSIIGQQIKNYSRSASSEELKFAEQLIGLS*
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mRNA from alignment at P-canaliculata_contig103642:2..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103642.505.1 ID=mRNA_P-canaliculata_contig103642.505.1|Name=mRNA_P-canaliculata_contig103642.505.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at P-canaliculata_contig103642:2..400+ (Pelvetia canaliculata dioecious)
GTCCCGCTGACGAATCTAAATCACTTAAGTTCTGCAATTTGCATTCTGCC
AGCGTCTTTGGATTCAAATTATGAAAAATGCTTGGCGGAAATTCAAATTG
ACAGTCTACAAGATGTACGCTCGCTACAAGGCAAACGTGGATCTGTTTTT
TGCTGGACGACTCAGTTGGCTCATTGGGGAACTCGGCAGTCGTCCTTTGG
ACCTCCTCGAATGAGCGTTGGTTACTATCTCAAACGAACTGAAGCGGAAA
ATTTAGAAGAGGAACATCCTTTGGAATTCTCGAACTCGCTTCCATTGACG
CAACGCCTATCTATCATCGGTCAGCAGATTAAAAACTACTCACGCTCGGC
GTCGTCGGAAGAGCTCAAGTTTGCCGAGCAGTTGATTGGATTGAGCTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103642:2..400+

>mRNA_P-canaliculata_contig103642.505.1 ID=mRNA_P-canaliculata_contig103642.505.1|Name=mRNA_P-canaliculata_contig103642.505.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at P-canaliculata_contig103642:2..400+ (Pelvetia canaliculata dioecious)
GTCCCGCTGACGAATCTAAATCACTTAAGTTCTGCAATTTGCATTCTGCC
AGCGTCTTTGGATTCAAATTATGAAAAATGCTTGGCGGAAATTCAAATTG
ACAGTCTACAAGATGTACGCTCGCTACAAGGCAAACGTGGATCTGTTTTT
TGCTGGACGACTCAGTTGGCTCATTGGGGAACTCGGCAGTCGTCCTTTGG
ACCTCCTCGAATGAGCGTTGGTTACTATCTCAAACGAACTGAAGCGGAAA
ATTTAGAAGAGGAACATCCTTTGGAATTCTCGAACTCGCTTCCATTGACG
CAACGCCTATCTATCATCGGTCAGCAGATTAAAAACTACTCACGCTCGGC
GTCGTCGGAAGAGCTCAAGTTTGCCGAGCAGTTGATTGGATTGAGCTAGG
TCCCGCTGACGAATCTAAATCACTTAAGTTCTGCAATTTGCATTCTGCCA
GCGTCTTTGGATTCAAATTATGAAAAATGCTTGGCGGAAATTCAAATTGA
CAGTCTACAAGATGTACGCTCGCTACAAGGCAAACGTGGATCTGTTTTTT
GCTGGACGACTCAGTTGGCTCATTGGGGAACTCGGCAGTCGTCCTTTGGA
CCTCCTCGAATGAGCGTTGGTTACTATCTCAAACGAACTGAAGCGGAAAA
TTTAGAAGAGGAACATCCTTTGGAATTCTCGAACTCGCTTCCATTGACGC
AACGCCTATCTATCATCGGTCAGCAGATTAAAAACTACTCACGCTCGGCG
TCGTCGGAAGAGCTCAAGTTTGCCGAGCAGTTGATTGGATTGAGCTAG
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