mRNA_P-canaliculata_contig103546.495.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103546.495.1
Unique NamemRNA_P-canaliculata_contig103546.495.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103546.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103546contigP-canaliculata_contig103546:2..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size837
Cds size837
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.1205564-CDS-P-canaliculata_contig103546:1..8381622815606.1205564-CDS-P-canaliculata_contig103546:1..838Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103546 2..838 +
1693494162.4277601-CDS-P-canaliculata_contig103546:1..8381693494162.4277601-CDS-P-canaliculata_contig103546:1..838Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103546 2..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103546.495.1prot_P-canaliculata_contig103546.495.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103546 2..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103546.495.1

>prot_P-canaliculata_contig103546.495.1 ID=prot_P-canaliculata_contig103546.495.1|Name=mRNA_P-canaliculata_contig103546.495.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=279bp
LNYPIFASEGCDLQASLFSTEITSRLALLFCSISLFAFLEMSFRENSKST
SFSIVAGISLFTLMSFSNTFWFETNLLQYLVGPSNSLLILRYTLPFLVAA
AMVRFWTSPFKLGILIGGLLFYSPDTGLPTAFAAFALTAMAGTDLKRLVF
GTMAGLVLGTILVTGGDLGAFIEFRKGMANGQFWYFPLYSDEFKYFDIPS
LMIYFRRDSIFLSAALLLSPVLILVLLLVSKRRPYVLAFVTLVTGVFGGA
ALTEFGGNISDRYWSATLFVFPFLVLFTI
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mRNA from alignment at P-canaliculata_contig103546:2..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103546.495.1 ID=mRNA_P-canaliculata_contig103546.495.1|Name=mRNA_P-canaliculata_contig103546.495.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at P-canaliculata_contig103546:2..838+ (Pelvetia canaliculata dioecious)
CTAAACTACCCTATTTTTGCATCAGAAGGATGCGACCTCCAGGCATCGTT
GTTCTCCACAGAAATAACATCAAGATTAGCGTTATTGTTTTGTAGTATAT
CTCTGTTCGCGTTCTTGGAAATGTCATTTAGAGAAAACTCTAAATCAACG
AGCTTTTCCATTGTTGCGGGAATTTCTTTATTCACGCTCATGAGCTTTTC
AAACACATTTTGGTTTGAGACCAACTTGCTTCAATATCTCGTTGGTCCGA
GTAACAGCCTTTTAATTTTACGCTACACTCTGCCGTTTTTAGTTGCAGCG
GCGATGGTAAGATTCTGGACCTCCCCATTTAAACTCGGAATCTTAATAGG
GGGGCTTCTATTTTATAGTCCAGACACCGGTCTTCCAACAGCTTTTGCCG
CTTTCGCTTTGACTGCAATGGCTGGAACGGACCTCAAAAGGCTTGTCTTT
GGGACGATGGCGGGTCTGGTTTTGGGCACAATACTCGTTACCGGCGGCGA
CCTCGGTGCATTTATAGAGTTTAGGAAGGGAATGGCAAACGGGCAGTTTT
GGTACTTTCCCCTCTATTCAGACGAGTTCAAATATTTTGATATACCGTCT
TTGATGATTTATTTTAGACGCGACTCAATTTTCTTGAGCGCCGCTTTACT
TCTCTCTCCCGTTTTAATTCTTGTTCTTTTGCTGGTTTCAAAACGACGAC
CGTATGTTTTAGCCTTCGTTACGCTCGTTACGGGTGTGTTTGGAGGTGCG
GCGTTAACTGAATTTGGCGGAAATATTTCCGACCGATATTGGTCTGCAAC
ACTTTTCGTGTTTCCTTTCTTAGTCTTGTTCACAATT
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Coding sequence (CDS) from alignment at P-canaliculata_contig103546:2..838+

>mRNA_P-canaliculata_contig103546.495.1 ID=mRNA_P-canaliculata_contig103546.495.1|Name=mRNA_P-canaliculata_contig103546.495.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1674bp|location=Sequence derived from alignment at P-canaliculata_contig103546:2..838+ (Pelvetia canaliculata dioecious)
CTAAACTACCCTATTTTTGCATCAGAAGGATGCGACCTCCAGGCATCGTT
GTTCTCCACAGAAATAACATCAAGATTAGCGTTATTGTTTTGTAGTATAT
CTCTGTTCGCGTTCTTGGAAATGTCATTTAGAGAAAACTCTAAATCAACG
AGCTTTTCCATTGTTGCGGGAATTTCTTTATTCACGCTCATGAGCTTTTC
AAACACATTTTGGTTTGAGACCAACTTGCTTCAATATCTCGTTGGTCCGA
GTAACAGCCTTTTAATTTTACGCTACACTCTGCCGTTTTTAGTTGCAGCG
GCGATGGTAAGATTCTGGACCTCCCCATTTAAACTCGGAATCTTAATAGG
GGGGCTTCTATTTTATAGTCCAGACACCGGTCTTCCAACAGCTTTTGCCG
CTTTCGCTTTGACTGCAATGGCTGGAACGGACCTCAAAAGGCTTGTCTTT
GGGACGATGGCGGGTCTGGTTTTGGGCACAATACTCGTTACCGGCGGCGA
CCTCGGTGCATTTATAGAGTTTAGGAAGGGAATGGCAAACGGGCAGTTTT
GGTACTTTCCCCTCTATTCAGACGAGTTCAAATATTTTGATATACCGTCT
TTGATGATTTATTTTAGACGCGACTCAATTTTCTTGAGCGCCGCTTTACT
TCTCTCTCCCGTTTTAATTCTTGTTCTTTTGCTGGTTTCAAAACGACGAC
CGTATGTTTTAGCCTTCGTTACGCTCGTTACGGGTGTGTTTGGAGGTGCG
GCGTTAACTGAATTTGGCGGAAATATTTCCGACCGATATTGGTCTGCAAC
ACTTTTCGTGTTTCCTTTCTTAGTCTTGTTCACAATTCTAAACTACCCTA
TTTTTGCATCAGAAGGATGCGACCTCCAGGCATCGTTGTTCTCCACAGAA
ATAACATCAAGATTAGCGTTATTGTTTTGTAGTATATCTCTGTTCGCGTT
CTTGGAAATGTCATTTAGAGAAAACTCTAAATCAACGAGCTTTTCCATTG
TTGCGGGAATTTCTTTATTCACGCTCATGAGCTTTTCAAACACATTTTGG
TTTGAGACCAACTTGCTTCAATATCTCGTTGGTCCGAGTAACAGCCTTTT
AATTTTACGCTACACTCTGCCGTTTTTAGTTGCAGCGGCGATGGTAAGAT
TCTGGACCTCCCCATTTAAACTCGGAATCTTAATAGGGGGGCTTCTATTT
TATAGTCCAGACACCGGTCTTCCAACAGCTTTTGCCGCTTTCGCTTTGAC
TGCAATGGCTGGAACGGACCTCAAAAGGCTTGTCTTTGGGACGATGGCGG
GTCTGGTTTTGGGCACAATACTCGTTACCGGCGGCGACCTCGGTGCATTT
ATAGAGTTTAGGAAGGGAATGGCAAACGGGCAGTTTTGGTACTTTCCCCT
CTATTCAGACGAGTTCAAATATTTTGATATACCGTCTTTGATGATTTATT
TTAGACGCGACTCAATTTTCTTGAGCGCCGCTTTACTTCTCTCTCCCGTT
TTAATTCTTGTTCTTTTGCTGGTTTCAAAACGACGACCGTATGTTTTAGC
CTTCGTTACGCTCGTTACGGGTGTGTTTGGAGGTGCGGCGTTAACTGAAT
TTGGCGGAAATATTTCCGACCGATATTGGTCTGCAACACTTTTCGTGTTT
CCTTTCTTAGTCTTGTTCACAATT
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