mRNA_P-canaliculata_contig103516.489.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103516.489.1
Unique NamemRNA_P-canaliculata_contig103516.489.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103516.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103516contigP-canaliculata_contig103516:184..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size435
Cds size420
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.826853-CDS-P-canaliculata_contig103516:183..6031622815605.826853-CDS-P-canaliculata_contig103516:183..603Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103516 184..603 -
1693494162.3082507-CDS-P-canaliculata_contig103516:183..6031693494162.3082507-CDS-P-canaliculata_contig103516:183..603Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103516 184..603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.850287-UTR-P-canaliculata_contig103516:603..6181622815605.850287-UTR-P-canaliculata_contig103516:603..618Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103516 604..618 -
1693494162.3165731-UTR-P-canaliculata_contig103516:603..6181693494162.3165731-UTR-P-canaliculata_contig103516:603..618Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103516 604..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103516.489.1prot_P-canaliculata_contig103516.489.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103516 184..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103516.489.1

>prot_P-canaliculata_contig103516.489.1 ID=prot_P-canaliculata_contig103516.489.1|Name=mRNA_P-canaliculata_contig103516.489.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
MSLNLPLASISAVMLFLLFDAPAQAQLQNLRVQLPVVRQYRNTSQYLIPD
GGTFSAGGISRSASGTTSRGVPGLRRPFANRFGGVQASQAQSSVKASILS
NREMSDAILAGASPARPAQVPFYKEVWARQQNARLNQKK*
back to top

mRNA from alignment at P-canaliculata_contig103516:184..618-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103516.489.1 ID=mRNA_P-canaliculata_contig103516.489.1|Name=mRNA_P-canaliculata_contig103516.489.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at P-canaliculata_contig103516:184..618- (Pelvetia canaliculata dioecious)
AATCGGAGAAGTCCAATGTCGCTCAACCTACCGCTGGCTAGTATTTCGGC
CGTGATGCTATTTTTGCTCTTCGACGCACCGGCTCAGGCTCAGTTACAAA
ATTTGAGAGTTCAGTTACCAGTTGTGAGACAGTATCGTAACACCAGTCAG
TACCTGATCCCTGACGGCGGAACGTTTAGTGCGGGTGGCATTAGCAGAAG
TGCTTCAGGGACGACTTCTAGAGGAGTACCAGGTTTGAGGCGACCTTTTG
CCAATCGATTTGGAGGCGTTCAGGCCTCGCAAGCTCAGTCCTCAGTGAAG
GCCAGTATTTTGTCAAACCGCGAAATGAGTGACGCGATCTTGGCCGGGGC
CTCTCCGGCTCGCCCAGCTCAGGTGCCCTTCTACAAAGAAGTTTGGGCTC
GTCAGCAAAACGCCCGTTTGAATCAAAAGAAGTAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig103516:184..618-

>mRNA_P-canaliculata_contig103516.489.1 ID=mRNA_P-canaliculata_contig103516.489.1|Name=mRNA_P-canaliculata_contig103516.489.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig103516:184..618- (Pelvetia canaliculata dioecious)
ATGTCGCTCAACCTACCGCTGGCTAGTATTTCGGCCGTGATGCTATTTTT
GCTCTTCGACGCACCGGCTCAGGCTCAGTTACAAAATTTGAGAGTTCAGT
TACCAGTTGTGAGACAGTATCGTAACACCAGTCAGTACCTGATCCCTGAC
GGCGGAACGTTTAGTGCGGGTGGCATTAGCAGAAGTGCTTCAGGGACGAC
TTCTAGAGGAGTACCAGGTTTGAGGCGACCTTTTGCCAATCGATTTGGAG
GCGTTCAGGCCTCGCAAGCTCAGTCCTCAGTGAAGGCCAGTATTTTGTCA
AACCGCGAAATGAGTGACGCGATCTTGGCCGGGGCCTCTCCGGCTCGCCC
AGCTCAGGTGCCCTTCTACAAAGAAGTTTGGGCTCGTCAGCAAAACGCCC
GTTTGAATCAAAAGAAGTAGATGTCGCTCAACCTACCGCTGGCTAGTATT
TCGGCCGTGATGCTATTTTTGCTCTTCGACGCACCGGCTCAGGCTCAGTT
ACAAAATTTGAGAGTTCAGTTACCAGTTGTGAGACAGTATCGTAACACCA
GTCAGTACCTGATCCCTGACGGCGGAACGTTTAGTGCGGGTGGCATTAGC
AGAAGTGCTTCAGGGACGACTTCTAGAGGAGTACCAGGTTTGAGGCGACC
TTTTGCCAATCGATTTGGAGGCGTTCAGGCCTCGCAAGCTCAGTCCTCAG
TGAAGGCCAGTATTTTGTCAAACCGCGAAATGAGTGACGCGATCTTGGCC
GGGGCCTCTCCGGCTCGCCCAGCTCAGGTGCCCTTCTACAAAGAAGTTTG
GGCTCGTCAGCAAAACGCCCGTTTGAATCAAAAGAAGTAG
back to top