mRNA_P-canaliculata_contig103473.484.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103473.484.1
Unique NamemRNA_P-canaliculata_contig103473.484.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103473.484.1 vs. uniprot
Match: A0A7X0H6Z1_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H6Z1_9BACT)

HSP 1 Score: 192 bits (487), Expect = 1.470e-55
Identity = 115/191 (60.21%), Postives = 142/191 (74.35%), Query Frame = 1 
Query:    1 RVVARLDDEVAAVRRNVRDAAGAVLAWLAAVVAHDDAGGDLDGVLDRCLRPGPDVERLNYAAMAAEILRVTGVELSPRRVQTAVNQLRGARAKQLKAGKPSASEPAEEPVGSALADLNGQLREAFAGLTGGDAASDAGTRRSLGTEVLTAVRAAAGRVIDRDFGEGIP-TEGLALTGDLQGRFLDYVRQAV 570
            R V RLDDEVAAVR+NV+D+A AVLAWL+AVVAH+    DLD +LDRCLRPGPD+ER+N+AAMA +I RVTGVELS +RVQTAV  LR AR K  +    +A+ PA++ +   LA+L+G+LR+ FA LT  +    A  RR +GT VLTAVR+AAGRVIDRDFGEGIP T  L     L+GRFL +VR  +
Sbjct:   56 RTVTRLDDEVAAVRKNVQDSARAVLAWLSAVVAHEGKT-DLDDILDRCLRPGPDIERVNFAAMAEDIFRVTGVELSAKRVQTAVTHLRAAREKANEQAA-AAAMPAKDELAERLAELDGRLRDNFATLTTQEPDGQAALRREIGTAVLTAVRSAAGRVIDRDFGEGIPDTVNLHA---LEGRFLGFVRDTL 241
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BLAST of mRNA_P-canaliculata_contig103473.484.1 vs. uniprot
Match: A0A2E2B4Y1_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B4Y1_9BACT)

HSP 1 Score: 130 bits (328), Expect = 1.290e-32
Identity = 80/190 (42.11%), Postives = 111/190 (58.42%), Query Frame = 1 
Query:    1 RVVARLDDEVAAVRRNVRDAAGAVLAWLAAVVAHDDAGGDLDGVLDRCLRPGPDVERLNYAAMAAEILRVTGVELSPRRVQTAVNQLRGARAKQLKAGKPSASEPAEEPVGSALADLNGQLREAFAGLTGGDAASDAGTRRSLGTEVLTAVRAAAGRVIDRDFGEGIPTEGLALTGDLQGRFLDYVRQAV 570
            R++ R+DD V  VR NV+DAA AV  W+A+VV HD     L+ +LD CLRPGP ++++NY A+A EI +    +LSPRRVQTA+  LR  R       +P+    A+  +   L  L+  L+     L        A   R +GTE+L  VR AAGR+I+ DFGEGI  +      D++ RFLD+V+ AV
Sbjct:   40 RIMRRVDDSVKDVRANVKDAAQAVATWVASVVNHDTGQTQLNEILDHCLRPGPQLDQINYTALAQEINQSMHTDLSPRRVQTAIQHLRAKR-------QPATMTDAKPKLQDQLNALHQDLQTNHQLLVAESGDDQANLHRRIGTEILAIVRVAAGRLIENDFGEGIAQD--IDIDDVESRFLDFVKDAV 220
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BLAST of mRNA_P-canaliculata_contig103473.484.1 vs. uniprot
Match: A0A2D5Z1F5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z1F5_9BACT)

HSP 1 Score: 127 bits (320), Expect = 2.080e-31
Identity = 86/190 (45.26%), Postives = 116/190 (61.05%), Query Frame = 1 
Query:    1 RVVARLDDEVAAVRRNVRDAAGAVLAWLAAVVAHDDAGGDLDGVLDRCLRPGPDVERLNYAAMAAEILRVTGVELSPRRVQTAVNQLRGARAKQLKAGKPSASEPAEEPVGSALADLNGQLREAFAGLTGGDAASDAGTRRSLGTEVLTAVRAAAGRVIDRDFGEGIPTEGLALTGDLQGRFLDYVRQAV 570
            R+V  +D EV  VRRNVRD+A AVL+W+++V  HD     LD VLDRCLRPGPD   +NY A+A EI R   VELSP+R++ A+  LR    K+       A+   ++ + ++L  L  +L+  FA L+  +       RR+  TEVL AVR AA R+ID D+GEGI    + L G L+GR LD+VR  V
Sbjct:   52 RLVTTVDAEVKDVRRNVRDSARAVLSWVSSVTEHDSPT-SLDDVLDRCLRPGPDETAVNYTALADEIRRTLDVELSPKRIKKAIEHLRTRHEKK-------AATMQQQRLKNSLDALRERLQANFAALSETEHDQRHELRRATATEVLHAVRCAASRLIDSDYGEGI-ARSMDLDG-LEGRCLDFVRDVV 231
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BLAST of mRNA_P-canaliculata_contig103473.484.1 vs. uniprot
Match: A0A3C0EGT6_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0EGT6_9BACT)

HSP 1 Score: 118 bits (296), Expect = 4.870e-28
Identity = 75/190 (39.47%), Postives = 112/190 (58.95%), Query Frame = 1 
Query:    1 RVVARLDDEVAAVRRNVRDAAGAVLAWLAAVVAHDDAGGDLDGVLDRCLRPGPDVERLNYAAMAAEILRVTGVELSPRRVQTAVNQLRGARAKQLKAGKPSASEPAEEPVGSALADLNGQLREAFAGLTGGDAASDAGTRRSLGTEVLTAVRAAAGRVIDRDFGEGIPTEGLALTGDLQGRFLDYVRQAV 570
            R++ R+DD V  +R NV+DAA AV  W+A+VV HD     L+ +LD+CLRPGP ++++NY A+A  I +    +LSPRRVQTA++ LR  R       + +     +  +   L+ L+  L+     L            R +GTE+L  VR AAGR+I+ DFGEGI  E + +  +++ RFLD+VR +V
Sbjct:   41 RMLRRVDDSVKDIRANVKDAASAVATWVASVVNHDADQPQLNEILDQCLRPGPQLDQINYTALAQHINQSMHTDLSPRRVQTAIDHLRAKR-------QTTTMTQPKPKLQDQLSALHLDLQANHQQLLDTTGKEQDTLYRRIGTEILAIVRVAAGRLIENDFGEGI-AEDIDID-EVESRFLDFVRDSV 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103473.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X0H6Z1_9BACT1.470e-5560.21Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A2E2B4Y1_9BACT1.290e-3242.11Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A2D5Z1F5_9BACT2.080e-3145.26Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A3C0EGT6_9BACT4.870e-2839.47Uncharacterized protein n=2 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103473contigP-canaliculata_contig103473:11..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.4704053-CDS-P-canaliculata_contig103473:10..5801622815605.4704053-CDS-P-canaliculata_contig103473:10..580Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103473 11..580 -
1693494162.1037693-CDS-P-canaliculata_contig103473:10..5801693494162.1037693-CDS-P-canaliculata_contig103473:10..580Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103473 11..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103473.484.1prot_P-canaliculata_contig103473.484.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103473 11..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103473.484.1

>prot_P-canaliculata_contig103473.484.1 ID=prot_P-canaliculata_contig103473.484.1|Name=mRNA_P-canaliculata_contig103473.484.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=190bp
RVVARLDDEVAAVRRNVRDAAGAVLAWLAAVVAHDDAGGDLDGVLDRCLR
PGPDVERLNYAAMAAEILRVTGVELSPRRVQTAVNQLRGARAKQLKAGKP
SASEPAEEPVGSALADLNGQLREAFAGLTGGDAASDAGTRRSLGTEVLTA
VRAAAGRVIDRDFGEGIPTEGLALTGDLQGRFLDYVRQAV
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mRNA from alignment at P-canaliculata_contig103473:11..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103473.484.1 ID=mRNA_P-canaliculata_contig103473.484.1|Name=mRNA_P-canaliculata_contig103473.484.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at P-canaliculata_contig103473:11..580- (Pelvetia canaliculata dioecious)
CGGGTGGTGGCGCGTCTGGATGACGAAGTGGCGGCGGTTCGCCGCAACGT
GCGCGATGCGGCGGGTGCCGTGCTGGCCTGGCTGGCGGCGGTGGTGGCCC
ACGACGACGCGGGGGGCGACCTGGACGGGGTGCTGGACCGCTGCCTGCGG
CCGGGCCCGGACGTGGAACGGTTGAATTACGCGGCGATGGCGGCGGAGAT
TCTGCGGGTGACGGGGGTGGAGCTTTCGCCGCGTCGCGTGCAGACGGCGG
TGAATCAACTGCGGGGGGCACGGGCGAAACAGTTGAAAGCCGGGAAGCCT
TCGGCGTCCGAGCCGGCGGAGGAACCGGTGGGGTCGGCGCTGGCGGACCT
CAACGGGCAGTTGCGGGAAGCTTTTGCCGGGTTGACCGGCGGAGACGCGG
CGAGCGATGCGGGGACGCGGCGGTCGCTGGGGACCGAGGTTTTGACGGCG
GTGCGGGCGGCCGCAGGTCGGGTCATCGACCGGGACTTTGGTGAGGGCAT
TCCCACCGAGGGTTTGGCTCTGACCGGCGATCTGCAAGGACGCTTTTTGG
ATTATGTGCGTCAGGCGGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103473:11..580-

>mRNA_P-canaliculata_contig103473.484.1 ID=mRNA_P-canaliculata_contig103473.484.1|Name=mRNA_P-canaliculata_contig103473.484.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at P-canaliculata_contig103473:11..580- (Pelvetia canaliculata dioecious)
CGGGTGGTGGCGCGTCTGGATGACGAAGTGGCGGCGGTTCGCCGCAACGT
GCGCGATGCGGCGGGTGCCGTGCTGGCCTGGCTGGCGGCGGTGGTGGCCC
ACGACGACGCGGGGGGCGACCTGGACGGGGTGCTGGACCGCTGCCTGCGG
CCGGGCCCGGACGTGGAACGGTTGAATTACGCGGCGATGGCGGCGGAGAT
TCTGCGGGTGACGGGGGTGGAGCTTTCGCCGCGTCGCGTGCAGACGGCGG
TGAATCAACTGCGGGGGGCACGGGCGAAACAGTTGAAAGCCGGGAAGCCT
TCGGCGTCCGAGCCGGCGGAGGAACCGGTGGGGTCGGCGCTGGCGGACCT
CAACGGGCAGTTGCGGGAAGCTTTTGCCGGGTTGACCGGCGGAGACGCGG
CGAGCGATGCGGGGACGCGGCGGTCGCTGGGGACCGAGGTTTTGACGGCG
GTGCGGGCGGCCGCAGGTCGGGTCATCGACCGGGACTTTGGTGAGGGCAT
TCCCACCGAGGGTTTGGCTCTGACCGGCGATCTGCAAGGACGCTTTTTGG
ATTATGTGCGTCAGGCGGTGCGGGTGGTGGCGCGTCTGGATGACGAAGTG
GCGGCGGTTCGCCGCAACGTGCGCGATGCGGCGGGTGCCGTGCTGGCCTG
GCTGGCGGCGGTGGTGGCCCACGACGACGCGGGGGGCGACCTGGACGGGG
TGCTGGACCGCTGCCTGCGGCCGGGCCCGGACGTGGAACGGTTGAATTAC
GCGGCGATGGCGGCGGAGATTCTGCGGGTGACGGGGGTGGAGCTTTCGCC
GCGTCGCGTGCAGACGGCGGTGAATCAACTGCGGGGGGCACGGGCGAAAC
AGTTGAAAGCCGGGAAGCCTTCGGCGTCCGAGCCGGCGGAGGAACCGGTG
GGGTCGGCGCTGGCGGACCTCAACGGGCAGTTGCGGGAAGCTTTTGCCGG
GTTGACCGGCGGAGACGCGGCGAGCGATGCGGGGACGCGGCGGTCGCTGG
GGACCGAGGTTTTGACGGCGGTGCGGGCGGCCGCAGGTCGGGTCATCGAC
CGGGACTTTGGTGAGGGCATTCCCACCGAGGGTTTGGCTCTGACCGGCGA
TCTGCAAGGACGCTTTTTGGATTATGTGCGTCAGGCGGTG
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