mRNA_P-canaliculata_contig103360.477.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103360.477.1
Unique NamemRNA_P-canaliculata_contig103360.477.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A2P4YAE2_9STRA (Copia proteinlike putative (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAE2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.110e-10
Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 1
Query:    1 RSEGLSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR-----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGG-GVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
            +S+G  +Q    C+YC   GH    CP   +++     A  Q P     AD   D  D      GGT+   E     W+ DSG++Q MT S +YM +Y++     V +ADD  +   G G++ MS  + +   + VL  V H+P L  NL S+ R
Sbjct:    7 KSKGRQAQKTSACHYCGEQGHWIAKCPVRIREN-----AERQRPQRANVADDYEDCGDYLFLVGGGTSKSSEV----WLVDSGATQHMTYSKEYMKNYKKMTPVDVHLADDGVVQAVGSGDIVMSMKTPRGIKKGVLTKVWHIPKLSRNLFSVGR 152          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A5N6LM83_9ASTR (CCHC-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LM83_9ASTR)

HSP 1 Score: 67.8 bits (164), Expect = 2.760e-10
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1
Query:   31 MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGG-GGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGH 465
            + C  C   GH +  CP  K       M +N V D E + D+ I +       C +  +VE W+ DSG+S     S D + + R G  G VR+ADD T+ I GIG++ +    G  W    L +V  +P L   L+S+ ++ D G+
Sbjct:  231 IECWNCKEKGHFKSQCP--KPLVAKGKMQMNNVTDDE-SDDALICEEIDAANICCVGNSVESWILDSGASFHAVSSPDLIKNLRTGNLGKVRLADDQTLDIAGIGDVDLRTSLGTVWT---LKDVRVIPNLRRKLISVGKLDDLGY 370          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A0L7KS65_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KS65_9NEOP)

HSP 1 Score: 64.3 bits (155), Expect = 3.610e-9
Identity = 45/150 (30.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   13 LSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYRE-GGGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDR 459
            L     + C  C  PGH RP+CP   K+ +   ++     D E T+ S +     G +TC  +    +W  DSG+S+ MTP  D+    +   G  V +A+   +   GIG++ ++       V   + +VA+VP L  NL+S+K++VD+
Sbjct:  105 LKKNKPIVCYECNKPGHKRPDCPLRNKEKKGGTLS-----DKETTSFSAL-----GVSTCLGK---NKWFIDSGASKHMTPRRDWFKDIKPLEGSTVTVANGEKIVCGGIGDISINTACN---VVDSIKDVAYVPELTSNLISVKKVVDK 238          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A2P4YIX8_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIX8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.780e-9
Identity = 49/155 (31.61%), Postives = 72/155 (46.45%), Query Frame = 1
Query:    1 RSEGLSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR-----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGG-GVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
            + +   +Q    C+YC   GH    CP   +++     A  Q P     AD   D  D      GGT+   E     W+ DSG++Q MT S +YM +Y++     V +ADD  +   G G++ MS  S +   + VL  V H+P L  NL S+ R
Sbjct:   53 KEQEQEAQKTSACHYCGEQGHWIAKCPVRIREN-----AERQRPQRANVADDDDDCGDYLFSVGGGTSKSSEV----WLVDSGATQHMTYSKEYMKNYKKMTPVDVHLADDGVVQAVGCGDIVMSMKSPRGIKKGVLTKVWHIPKLSRNLFSVGR 198          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A5N6NES0_9ASTR (CCHC-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NES0_9ASTR)

HSP 1 Score: 62.4 bits (150), Expect = 2.040e-8
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   31 MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGG-GGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSL 441
            + C  C   GH +  CP  K       M +N V D E + D+ I +       C +  +VE W+ DSG+S     S D + + R G  G VR+ADD T+ I GIG++ +    G  W    L +V  +P L   L+S+
Sbjct:  231 IECWNCKEKGHFKSQCP--KPLVAKGKMQMNNVTDDE-SDDALICEEIDAANICCVGNSVESWILDSGASFHAVSSPDLIKNLRIGNLGKVRLADDQTLDIAGIGDVDLRTSLGTVWT---LKDVRVIPNLRRKLISV 362          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A484M467_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M467_9ASTE)

HSP 1 Score: 60.5 bits (145), Expect = 9.140e-8
Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 1
Query:   16 SSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFI------ETTVERWVADSGSSQFMTPSADYMVSYREG-GGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGHKY 471
            +S+ ++ C  C   GHIR +CP+ ++    A    N V D E T  S +     G    F+      E +   WV  S     M    ++  + +EG    +R+ADD+T+ + G+G + +  + G   V + L NVA+VP L +NL+SL ++   G++Y
Sbjct:  211 ASKNEVRCYKCGELGHIRRDCPKKREGKNDA----NLVRDGE-TGSSSLGN---GSDELFMVANGHDEASDNDWVLGSACVSHMCSKREHFETLQEGMTKKLRLADDSTVDVMGVGVVKVKMFDG---VVMTLGNVAYVPKLRWNLISLSQLDSEGYEY 358          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: UPI001652F106 (uncharacterized protein LOC110877269 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652F106)

HSP 1 Score: 60.5 bits (145), Expect = 1.130e-7
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   31 MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGG-GGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGHKYV 474
            + C  C   GH R  CP     +   V    QV    +T++   D        C +E T E  V DSG+S   TP++  M + R G  G VR+A+++T+ I GIG++ +    G  W+   L +V  +P L   L+S+ ++ D+G+  V
Sbjct:  230 INCWNCKENGHFRSQCP-----NPPIVRDQKQV---NITSEDSDD-----ALICCVEDTAESRVMDSGASFHATPTSKNMKNLRTGNFGKVRLANNHTLAITGIGDIELRTSLGTTWI---LKDVRVIPGLKKMLISVGQLDDQGYDVV 362          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A329RJJ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RJJ7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.380e-7
Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 1
Query:   19 SQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYRE-GGGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
            +Q    C+YC   GH    CP   +++     A  Q P     A S+ +  +     GG T  +  +   W+ DSG++Q MT S +YM  Y++     V +ADD  + + G G + MS  + +   + VL +V H+P L  NL S+ R
Sbjct:  219 AQKASACHYCGEQGHWIAKCPARIREN-----AEQQRPQRANVAQSEDNFGNYLFSVGGNT-GVSKSSGVWLVDSGATQHMTYSKEYMKKYKKISPVDVHLADDGVVEVAGTGGIVMSMKTPRGTKKGVLTSVWHIPKLSRNLFSVGR 360          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A2P4XKY4_9STRA (Retroelement (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKY4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-7
Identity = 48/155 (30.97%), Postives = 72/155 (46.45%), Query Frame = 1
Query:    1 RSEGLSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR-----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGG-GVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
            +S+G  +Q    C+Y    GH    CP   +++     A  Q P     AD   D  D      GGT+   E     W+ DSG++Q MT S +YM +Y++     V + DD  +   G G++ MS  + +   + VL  V H+P L  NL S+ R
Sbjct:  184 KSKGRQAQKTSACHYRGEQGHWIAKCPVRIREN-----AERQRPQRANVADDDEDCGDYLFSVGGGTSKSSEV----WLVDSGATQHMTYSKEYMKNYKKMTPVDVHLTDDGVVQAVGSGDIVMSMKTPRGIKKGVLTKVWHIPKLSRNLFSVGR 329          
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: UPI0013280597 (uncharacterized protein n=1 Tax=Colletotrichum fructicola TaxID=690256 RepID=UPI0013280597)

HSP 1 Score: 59.7 bits (143), Expect = 1.760e-7
Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 1
Query:   16 SSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKND---RGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYRE-GGGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
            + +    C+YC   GH    CP   +++     A  Q P     A S+ D  D     G+   +  +   W+ DSG++Q MT S +YM ++++     V +ADD  +   G G++ MS  + +   + VL NV ++P L  NL S+ R
Sbjct:  241 AQKTSSACHYCGEHGHWIAKCPVRIREN-----AERQRPQRANVAQSEDDSGDFLFSVGSNKDVSKSSGMWLVDSGATQHMTYSKEYMKNFKKITPVDVHLADDGVVQALGTGDIVMSMRTPRGMKKGVLTNVWYIPKLSRNLFSVGR 383          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4YAE2_9STRA2.110e-1032.26Copia proteinlike putative (Fragment) n=1 Tax=Phyt... [more]
A0A5N6LM83_9ASTR2.760e-1032.19CCHC-type domain-containing protein n=2 Tax=Mikani... [more]
A0A0L7KS65_9NEOP3.610e-930.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P4YIX8_9STRA7.780e-931.61Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A5N6NES0_9ASTR2.040e-832.61CCHC-type domain-containing protein n=1 Tax=Mikani... [more]
A0A484M467_9ASTE9.140e-829.56CCHC-type domain-containing protein n=1 Tax=Cuscut... [more]
UPI001652F1061.130e-730.87uncharacterized protein LOC110877269 n=1 Tax=Helia... [more]
A0A329RJJ7_9STRA1.380e-730.41Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2P4XKY4_9STRA1.450e-730.97Retroelement (Fragment) n=1 Tax=Phytophthora palmi... [more]
UPI00132805971.760e-729.05uncharacterized protein n=1 Tax=Colletotrichum fru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103360contigP-canaliculata_contig103360:38..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog3712.Bo6g049300.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size477
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103360.477.1prot_P-canaliculata_contig103360.477.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103360 68..643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.9598942-UTR-P-canaliculata_contig103360:37..671622815604.9598942-UTR-P-canaliculata_contig103360:37..67Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103360 38..67 +
1693494161.854584-UTR-P-canaliculata_contig103360:37..671693494161.854584-UTR-P-canaliculata_contig103360:37..67Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103360 38..67 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.9772613-CDS-P-canaliculata_contig103360:67..1221622815604.9772613-CDS-P-canaliculata_contig103360:67..122Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103360 68..122 +
1693494161.865982-CDS-P-canaliculata_contig103360:67..1221693494161.865982-CDS-P-canaliculata_contig103360:67..122Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103360 68..122 +
1622815604.9911258-CDS-P-canaliculata_contig103360:203..3171622815604.9911258-CDS-P-canaliculata_contig103360:203..317Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103360 204..317 +
1693494161.8752227-CDS-P-canaliculata_contig103360:203..3171693494161.8752227-CDS-P-canaliculata_contig103360:203..317Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103360 204..317 +
1622815605.0026302-CDS-P-canaliculata_contig103360:365..6431622815605.0026302-CDS-P-canaliculata_contig103360:365..643Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103360 366..643 +
1693494161.8853984-CDS-P-canaliculata_contig103360:365..6431693494161.8853984-CDS-P-canaliculata_contig103360:365..643Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103360 366..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103360.477.1

>prot_P-canaliculata_contig103360.477.1 ID=prot_P-canaliculata_contig103360.477.1|Name=mRNA_P-canaliculata_contig103360.477.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=149bp
MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRG
GTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGGGVRIADDNTMPI
EGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGHKYVG
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mRNA from alignment at P-canaliculata_contig103360:38..643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103360.477.1 ID=mRNA_P-canaliculata_contig103360.477.1|Name=mRNA_P-canaliculata_contig103360.477.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig103360:38..643+ (Pelvetia canaliculata dioecious)
CGAAGTGAGGGGCTTTCATCGCAGGCGAAAATGACCTGCAATTACTGCCT GAATCCCGGGCATATTCGCCCCAACTGTCCCGAACGTCAATGCTACAAGT GCCAAGGGTGGGGTCACGAGGCTATTTCCTGCCCGTCTAAGGTTCTAACT CCAAAAGAGAATGGAGACAAGAAGAAGGACGAGTCAGCTGTTATGGCGGT AAATCAAGTTCCAGATTCCGAGGTAACAGCTGACAGTAAGATTGACAAAA ATGATAGGGGGGGCACGACCTGTTTCATTGGTGTTGAGATTGAGAAAGAT TTTCCCCCGGTTGGGGAACTGCCACCAGAAACTACGGTCGAAAGATGGGT TGCAGACAGTGGATCCTCGCAGTTTATGACGCCTTCCGCTGACTACATGG TCAGCTACCGTGAGGGTGGAGGTGGCGTTAGAATTGCTGACGACAATACG ATGCCGATCGAAGGTATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAA GGATTGGGTGCAGGTAGTTTTGCCGAATGTCGCTCATGTTCCACTCCTGG GATATAACTTGCTGTCGTTGAAGAGGATGGTTGATCGCGGTCACAAATAC GTCGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig103360:38..643+

>mRNA_P-canaliculata_contig103360.477.1 ID=mRNA_P-canaliculata_contig103360.477.1|Name=mRNA_P-canaliculata_contig103360.477.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at P-canaliculata_contig103360:38..643+ (Pelvetia canaliculata dioecious)
ATGACCTGCAATTACTGCCTGAATCCCGGGCATATTCGCCCCAACTGTCC
CGAACATGACCTGCAATTACTGCCTGAATCCCGGGCATATTCGCCCCAAC
TGTCCCGAACACAAGAAGAAGGACGAGTCAGCTGTTATGGCGGTAAATCA
AGTTCCAGATTCCGAGGTAACAGCTGACAGTAAGATTGACAAAAATGATA
GGGGGGGCACGACCTGTTTCATTGACAAGAAGAAGGACGAGTCAGCTGTT
ATGGCGGTAAATCAAGTTCCAGATTCCGAGGTAACAGCTGACAGTAAGAT
TGACAAAAATGATAGGGGGGGCACGACCTGTTTCATTGAAACTACGGTCG
AAAGATGGGTTGCAGACAGTGGATCCTCGCAGTTTATGACGCCTTCCGCT
GACTACATGGTCAGCTACCGTGAGGGTGGAGGTGGCGTTAGAATTGCTGA
CGACAATACGATGCCGATCGAAGGTATTGGGAATTTACCGATGAGCTTCT
GGTCTGGTAAGGATTGGGTGCAGGTAGTTTTGCCGAATGTCGCTCATGTT
CCACTCCTGGGATATAACTTGCTGTCGTTGAAGAGGATGGTTGATCGCGG
TCACAAATACGTCGGCAAACTACGGTCGAAAGATGGGTTGCAGACAGTGG
ATCCTCGCAGTTTATGACGCCTTCCGCTGACTACATGGTCAGCTACCGTG
AGGGTGGAGGTGGCGTTAGAATTGCTGACGACAATACGATGCCGATCGAA
GGTATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGGTGCA
GGTAGTTTTGCCGAATGTCGCTCATGTTCCACTCCTGGGATATAACTTGC
TGTCGTTGAAGAGGATGGTTGATCGCGGTCACAAATACGTCGGC
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