mRNA_P-canaliculata_contig103360.477.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A2P4YAE2_9STRA (Copia proteinlike putative (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAE2_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.110e-10 Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 1
Query: 1 RSEGLSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR-----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGG-GVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
+S+G +Q C+YC GH CP +++ A Q P AD D D GGT+ E W+ DSG++Q MT S +YM +Y++ V +ADD + G G++ MS + + + VL V H+P L NL S+ R
Sbjct: 7 KSKGRQAQKTSACHYCGEQGHWIAKCPVRIREN-----AERQRPQRANVADDYEDCGDYLFLVGGGTSKSSEV----WLVDSGATQHMTYSKEYMKNYKKMTPVDVHLADDGVVQAVGSGDIVMSMKTPRGIKKGVLTKVWHIPKLSRNLFSVGR 152
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A5N6LM83_9ASTR (CCHC-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LM83_9ASTR) HSP 1 Score: 67.8 bits (164), Expect = 2.760e-10 Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1
Query: 31 MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGG-GGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGH 465
+ C C GH + CP K M +N V D E + D+ I + C + +VE W+ DSG+S S D + + R G G VR+ADD T+ I GIG++ + G W L +V +P L L+S+ ++ D G+
Sbjct: 231 IECWNCKEKGHFKSQCP--KPLVAKGKMQMNNVTDDE-SDDALICEEIDAANICCVGNSVESWILDSGASFHAVSSPDLIKNLRTGNLGKVRLADDQTLDIAGIGDVDLRTSLGTVWT---LKDVRVIPNLRRKLISVGKLDDLGY 370
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A0L7KS65_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KS65_9NEOP) HSP 1 Score: 64.3 bits (155), Expect = 3.610e-9 Identity = 45/150 (30.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query: 13 LSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYRE-GGGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDR 459
L + C C PGH RP+CP K+ + ++ D E T+ S + G +TC + +W DSG+S+ MTP D+ + G V +A+ + GIG++ ++ V + +VA+VP L NL+S+K++VD+
Sbjct: 105 LKKNKPIVCYECNKPGHKRPDCPLRNKEKKGGTLS-----DKETTSFSAL-----GVSTCLGK---NKWFIDSGASKHMTPRRDWFKDIKPLEGSTVTVANGEKIVCGGIGDISINTACN---VVDSIKDVAYVPELTSNLISVKKVVDK 238
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A2P4YIX8_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIX8_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.780e-9 Identity = 49/155 (31.61%), Postives = 72/155 (46.45%), Query Frame = 1
Query: 1 RSEGLSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR-----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGG-GVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
+ + +Q C+YC GH CP +++ A Q P AD D D GGT+ E W+ DSG++Q MT S +YM +Y++ V +ADD + G G++ MS S + + VL V H+P L NL S+ R
Sbjct: 53 KEQEQEAQKTSACHYCGEQGHWIAKCPVRIREN-----AERQRPQRANVADDDDDCGDYLFSVGGGTSKSSEV----WLVDSGATQHMTYSKEYMKNYKKMTPVDVHLADDGVVQAVGCGDIVMSMKSPRGIKKGVLTKVWHIPKLSRNLFSVGR 198
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A5N6NES0_9ASTR (CCHC-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NES0_9ASTR) HSP 1 Score: 62.4 bits (150), Expect = 2.040e-8 Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 1
Query: 31 MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGG-GGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSL 441
+ C C GH + CP K M +N V D E + D+ I + C + +VE W+ DSG+S S D + + R G G VR+ADD T+ I GIG++ + G W L +V +P L L+S+
Sbjct: 231 IECWNCKEKGHFKSQCP--KPLVAKGKMQMNNVTDDE-SDDALICEEIDAANICCVGNSVESWILDSGASFHAVSSPDLIKNLRIGNLGKVRLADDQTLDIAGIGDVDLRTSLGTVWT---LKDVRVIPNLRRKLISV 362
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A484M467_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M467_9ASTE) HSP 1 Score: 60.5 bits (145), Expect = 9.140e-8 Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 1
Query: 16 SSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFI------ETTVERWVADSGSSQFMTPSADYMVSYREG-GGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGHKY 471
+S+ ++ C C GHIR +CP+ ++ A N V D E T S + G F+ E + WV S M ++ + +EG +R+ADD+T+ + G+G + + + G V + L NVA+VP L +NL+SL ++ G++Y
Sbjct: 211 ASKNEVRCYKCGELGHIRRDCPKKREGKNDA----NLVRDGE-TGSSSLGN---GSDELFMVANGHDEASDNDWVLGSACVSHMCSKREHFETLQEGMTKKLRLADDSTVDVMGVGVVKVKMFDG---VVMTLGNVAYVPKLRWNLISLSQLDSEGYEY 358
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: UPI001652F106 (uncharacterized protein LOC110877269 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652F106) HSP 1 Score: 60.5 bits (145), Expect = 1.130e-7 Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query: 31 MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGG-GGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKRMVDRGHKYV 474
+ C C GH R CP + V QV +T++ D C +E T E V DSG+S TP++ M + R G G VR+A+++T+ I GIG++ + G W+ L +V +P L L+S+ ++ D+G+ V
Sbjct: 230 INCWNCKENGHFRSQCP-----NPPIVRDQKQV---NITSEDSDD-----ALICCVEDTAESRVMDSGASFHATPTSKNMKNLRTGNFGKVRLANNHTLAITGIGDIELRTSLGTTWI---LKDVRVIPGLKKMLISVGQLDDQGYDVV 362
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A329RJJ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RJJ7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.380e-7 Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 1
Query: 19 SQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYRE-GGGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
+Q C+YC GH CP +++ A Q P A S+ + + GG T + + W+ DSG++Q MT S +YM Y++ V +ADD + + G G + MS + + + VL +V H+P L NL S+ R
Sbjct: 219 AQKASACHYCGEQGHWIAKCPARIREN-----AEQQRPQRANVAQSEDNFGNYLFSVGGNT-GVSKSSGVWLVDSGATQHMTYSKEYMKKYKKISPVDVHLADDGVVEVAGTGGIVMSMKTPRGTKKGVLTSVWHIPKLSRNLFSVGR 360
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: A0A2P4XKY4_9STRA (Retroelement (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKY4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.450e-7 Identity = 48/155 (30.97%), Postives = 72/155 (46.45%), Query Frame = 1
Query: 1 RSEGLSSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDR-----GGTTCFIETTVERWVADSGSSQFMTPSADYMVSYREGGG-GVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
+S+G +Q C+Y GH CP +++ A Q P AD D D GGT+ E W+ DSG++Q MT S +YM +Y++ V + DD + G G++ MS + + + VL V H+P L NL S+ R
Sbjct: 184 KSKGRQAQKTSACHYRGEQGHWIAKCPVRIREN-----AERQRPQRANVADDDEDCGDYLFSVGGGTSKSSEV----WLVDSGATQHMTYSKEYMKNYKKMTPVDVHLTDDGVVQAVGSGDIVMSMKTPRGIKKGVLTKVWHIPKLSRNLFSVGR 329
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Match: UPI0013280597 (uncharacterized protein n=1 Tax=Colletotrichum fructicola TaxID=690256 RepID=UPI0013280597) HSP 1 Score: 59.7 bits (143), Expect = 1.760e-7 Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 1
Query: 16 SSQAKMTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKND---RGGTTCFIETTVERWVADSGSSQFMTPSADYMVSYRE-GGGGVRIADDNTMPIEGIGNLPMSFWSGKDWVQVVLPNVAHVPLLGYNLLSLKR 447
+ + C+YC GH CP +++ A Q P A S+ D D G+ + + W+ DSG++Q MT S +YM ++++ V +ADD + G G++ MS + + + VL NV ++P L NL S+ R
Sbjct: 241 AQKTSSACHYCGEHGHWIAKCPVRIREN-----AERQRPQRANVAQSEDDSGDFLFSVGSNKDVSKSSGMWLVDSGATQHMTYSKEYMKNFKKITPVDVHLADDGVVQALGTGDIVMSMRTPRGMKKGVLTNVWYIPKLSRNLFSVGR 383 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103360.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig103360.477.1 >prot_P-canaliculata_contig103360.477.1 ID=prot_P-canaliculata_contig103360.477.1|Name=mRNA_P-canaliculata_contig103360.477.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=149bp MTCNYCLNPGHIRPNCPEHKKKDESAVMAVNQVPDSEVTADSKIDKNDRGback to top mRNA from alignment at P-canaliculata_contig103360:38..643+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig103360.477.1 ID=mRNA_P-canaliculata_contig103360.477.1|Name=mRNA_P-canaliculata_contig103360.477.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig103360:38..643+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig103360:38..643+ >mRNA_P-canaliculata_contig103360.477.1 ID=mRNA_P-canaliculata_contig103360.477.1|Name=mRNA_P-canaliculata_contig103360.477.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at P-canaliculata_contig103360:38..643+ (Pelvetia canaliculata dioecious)back to top |