mRNA_P-canaliculata_contig103332.474.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103332.474.1
Unique NamemRNA_P-canaliculata_contig103332.474.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A0S2IEC1_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Stephanosphaera pluvialis TaxID=51712 RepID=A0A0S2IEC1_9CHLO)

HSP 1 Score: 278 bits (710), Expect = 3.660e-90
Identity = 139/284 (48.94%), Postives = 179/284 (63.03%), Query Frame = 1
Query:   22 MAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRL--------------------------------GKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQIM 777
            MA++ I +++KSVLCGTC+ DSSL+I K Y NARIQCRHS++QASWFFWKW VCL DY  G +S      DG+Q   + ++  +                                GKL + T A   LT LH +   NN+  + R WLNHMN+YFLM +WLDDGSL   RQG  CLDSTP  QQ +   YL+ VW I+  V  T +KM NG+  YR+ I NQ+S+L+LLRI+APIIPV+EMLYKIMFVP NN DLLQRW SE+  LV  +F+  ++++Y  I+
Sbjct:    1 MAKLPIDSLRKSVLCGTCLTDSSLRIAKNYANARIQCRHSSRQASWFFWKWAVCLKDYIKGDTSFVFNNADGYQAKSIEKEGEILSPFRGGGVNPPTRKGEIPEAPVPEGTGASGIGKLSVATKALPALTALHSIFTKNNKDYVSRSWLNHMNDYFLMVVWLDDGSLSKSRQGYICLDSTPKNQQQVFVDYLKTVWEIEAYVVDTKLKMRNGEQRYRIAIKNQESLLRLLRIVAPIIPVKEMLYKIMFVPFNNSDLLQRWASEVSILVLPEFRSYIRDEYQAII 284          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: Q39560_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Lobochlamys segnis TaxID=52035 RepID=Q39560_9CHLO)

HSP 1 Score: 238 bits (608), Expect = 4.110e-75
Identity = 124/260 (47.69%), Postives = 170/260 (65.38%), Query Frame = 1
Query:   22 MAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQL-NGLSEQK-----------RLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDY 765
            MAQV ++ I+KSVLCGT +GD+S  I+ GYKNAR Q  HST Q +WFFWK+ V L D++   + +   +P G QL N  SE               GKLKI + A   LTELH +IC+ N+  I+R WLNHMNNYFLMT+WLDDGS+ + RQG+   +S P  QQ I   YL  VW I+ +++ T  KM NGQ + R+ I +Q+++L LLR IAP++PVREMLYK+ F+ ++N+ L QRW +E+  LV  +F +++   Y
Sbjct:    1 MAQVPLTEIEKSVLCGTILGDASFAISDGYKNARFQSNHSTNQLTWFFWKFFVILKDFTKP-TGLIYSEPSGKQLINQTSEASFFEPGEDSLEIPFGKLKIASLADAKLTELHSVICNKNRKTIERSWLNHMNNYFLMTVWLDDGSMTSGRQGILSFNSYPADQQQIFRDYLLQVWGIETRLQDTGQKMQNGQPNCRISIKDQENLLNLLRYIAPVVPVREMLYKVCFMAESNLSLSQRWKTEVKGLVRPEFAEEIDKIY 259          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A1L2M5A9_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A1L2M5A9_9CHLO)

HSP 1 Score: 231 bits (590), Expect = 1.420e-71
Identity = 123/262 (46.95%), Postives = 167/262 (63.74%), Query Frame = 1
Query:    7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQ-KRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQIMINI 786
            L+ KQ+AQ+ ++T++ SVL GT  GD+S+ I KGYKNAR QCRHST+Q+ WFFWKW+  L  +   LSS+  Q  DG+QL    +  + LGKLK+TT A E+LT++H +I    +   +R WLNHM +YFLMTLWLDDGS++    QG F LD        + S YLR VW ++  V         G   +R+ I++   +L LLRIIAPIIPVR MLYK+ FV  N+ +L QRW  E++ LV  +FKD+VK  Y  +   +
Sbjct:   60 LEGKQVAQLPLTTLETSVLFGTISGDTSINIDKGYKNARCQCRHSTRQSEWFFWKWITVLGRFCE-LSSMLWQASDGYQLASAEKPGELLGKLKVTTRACEELTQVHSIIVTKGKKGFRRSWLNHMTDYFLMTLWLDDGSIHAGGTQGEFALDMHEVADLELFSDYLRTVWGVNNYVVDKKEYTKCGHRRHRINIASPKDLLNLLRIIAPIIPVRSMLYKVYFVSHNDSNLTQRWACELVSLVKDEFKDEVKTFYANLQTQV 320          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A522U6F6_9BACT (LAGLIDADG_2 domain-containing protein n=1 Tax=Patescibacteria group bacterium TaxID=2052139 RepID=A0A522U6F6_9BACT)

HSP 1 Score: 147 bits (372), Expect = 9.600e-40
Identity = 94/234 (40.17%), Postives = 141/234 (60.26%), Query Frame = 1
Query:   25 AQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQIS--YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEI 717
            + V +S   K ++ G+ +GD SLKI + YKNAR   RHS  Q ++F WK +  L++ S+   S+ LQ+ D    NG S+Q    KL+  + A E LTE+H L C NN++EI+RKWLN M+   L   W DDGS+  N R+GV C D    +   +L+KYL+ VW I  +V+  +I   NG+    +R+++ + + + KLLRII P   V E+L K++ +  N++ L +RW SEI
Sbjct:    5 SNVPLSNGVKEIILGSLLGDGSLKIHRPYKNARFSFRHSVIQKAYFDWK-VRQLSEISSD-KSVWLQEQD----NGFSKQ---AKLRYQSKALEALTEMHNLTCKNNRLEIRRKWLNFMSPLSLAIWWFDDGSIISNGRKGVICTDGFDEKAVQVLAKYLQTVWKI--KVRVASITKVNGKKEKYFRIWLRSTEELKKLLRIILPYTKVEEVLPKVILM-YNDVQLQERWISEI 226          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A524GE24_9BACT (LAGLIDADG_2 domain-containing protein n=1 Tax=Parcubacteria group bacterium TaxID=2026774 RepID=A0A524GE24_9BACT)

HSP 1 Score: 147 bits (371), Expect = 1.250e-39
Identity = 94/228 (41.23%), Postives = 133/228 (58.33%), Query Frame = 1
Query:   52 KSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQIS--YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDL 726
            + V+ G+ +GD SLKI   Y NAR   RHST Q  +FFWK    L + S G SS   QK DGF            KL+  + A E LT+L+QL+  NN +EI+RKWLN +    LM  WLDDGSL  N ++GVFC DS   ++Q +L +YL  VW +   + + + +  NG+    YRL+I + + + K LRII P + +  ML K++ + K++ +L QRW SE+  L
Sbjct:   12 REVILGSLLGDGSLKIHSSYINARFSFRHSTHQKEYFFWK-AEKLKEIS-GNSSFWQQKADGFGGE---------KLRYQSLALESLTDLYQLVSKNNNLEIRRKWLNKLTPLSLMIWWLDDGSLIGNGKRGVFCTDSFSLEEQKLLVRYLYKVWGVKVSIGKIH-RERNGKAKEYYRLWIRSSEELKKFLRIILPYMSMPTMLPKVLILYKDS-ELQQRWISEVSHL 226          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A519TQ83_9BACT (LAGLIDADG_2 domain-containing protein n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519TQ83_9BACT)

HSP 1 Score: 148 bits (373), Expect = 8.860e-39
Identity = 101/311 (32.48%), Postives = 160/311 (51.45%), Query Frame = 1
Query:    7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNR-RQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTN----------------IKMTNGQIS----------------------------YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQIMINITEEDIV 804
            L +K++A +S+S  ++SV+ G+ +GD SLKI  GYKNAR   RHS KQ+++FF+K  +     S+G  S+  Q PDG+          LGK +  + A   L+E+H +   NN++EI+RKWLNH+  + L   W DDGS+ +  R+GV C D     + ++L+KYL  VW I+ +V + +                 K+T   +                             YRL++S +  +   LRII P +P +EMLYK++   K+ + L +RW SE+      D K  + + +++I    +E DIV
Sbjct:   58 LSRKRLANISLSCSERSVILGSLLGDGSLKIYPGYKNARFSFRHSEKQSAYFFYKVDLLSGIRSSG--SVQRQAPDGWS--------SLGKTRYQSRALPALSEIHNVTHKNNKLEIRRKWLNHLTAHSLAIWWFDDGSIISGGRRGVLCTDGFSEAECLLLAKYLLVVWKINARVGRVSKRPRKVSLSTNQAANPCKLTQNSLGSAKSPPPFDLNPHERKGEESLRLQGNNYYRLWLSTEQ-LKSFLRIILPYVPCKEMLYKVLLTYKD-LQLQERWISEVEKGCPQDLKPFLASCFEKIKKKTSENDIV 356          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A6B9VYY9_9CHLO (Putative LAGLIDADG homing endonuclease n=2 Tax=Caulerpa TaxID=76312 RepID=A0A6B9VYY9_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 1.710e-37
Identity = 96/246 (39.02%), Postives = 138/246 (56.10%), Query Frame = 1
Query:    7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQIS--YRLFISNQDSILKLLRIIAPIIPVR-----EMLYKIMFVPKNNIDLLQRWTSEII 720
            L KK+ +Q+S+S   K++L G+ +GD SLKI K YKNAR   RHS  Q  ++ WK +  L + S   S+  LQKP G+       QK   K    + A+E LTE++ +I   N++ I+RKWLN +    L   WLDDGS+  N R+GVFC D    ++  +L +Y   VW I+  +     +  NGQ    +RL++ N  S+ KL RII P IP+       MLYK   + KN  +L +RW SE++
Sbjct:    7 LSKKKFSQISLSDSCKAILLGSLLGDGSLKIYKPYKNARFWIRHSISQKDYYNWK-IKELKEISTKKSN-QLQKPSGYS------QKE--KFLFQSAAKEQLTEIYNIIYRKNRLRIRRKWLNFLTPLSLAIWWLDDGSIIDNGRRGVFCTDGFSKKEHEVLKRYFYVVWKIEVHIGVLK-RFYNGQHKNYFRLYLKN-TSLKKLFRIIMPHIPISGYLMSSMLYKFCLLYKNT-ELQERWISEMV 239          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A0S2IDN7_HAELA (LAGLIDADG DNA endonuclease family protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A0S2IDN7_HAELA)

HSP 1 Score: 141 bits (356), Expect = 6.450e-37
Identity = 92/262 (35.11%), Postives = 143/262 (54.58%), Query Frame = 1
Query:    7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQI-EIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQV----KQTNIK----MTNGQIS------------------YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTS 711
            L KK+M ++ +S   KSV+ GT +GD++L I K +KNAR Q RH   Q  +F WK  +  +  +    ++  Q+PDG+Q     ++K +GK    T A  +LT++ +++C + +  +IKR WLNH+    LM LWLDDGSL  R++GV C +    ++ +ILSKYL+ VW ID  V    K+ N+     ++N  +                   YR+ I N  ++ K  R+I P IP   M+YK+  +   + +L QRW S
Sbjct:   18 LSKKRMERIKLSKRIKSVILGTLLGDAALNIQKNFKNARFQMRHGHVQKEYFDWKVQILKSLGTE--KAVHFQEPDGYQ-----KKKHVGKWHFQTRALPELTQIFEIVCSSKKRKQIKRSWLNHLTKESLMVLWLDDGSLL-RKKGVLCTEGFSKKENLILSKYLKQVWKIDTNVIPILKKRNLPTPLVLSNKGVGRFHHPSVEREVEQEQRFYYRIRI-NTTNLTKFFRLIIPFIPCASMVYKVC-IDYVDPELKQRWIS 269          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A097KMG7_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Xylochloris irregularis TaxID=480381 RepID=A0A097KMG7_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 1.000e-36
Identity = 89/245 (36.33%), Postives = 132/245 (53.88%), Query Frame = 1
Query:    4 FLQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPK------NNIDLLQRWTSEI 717
            FL +K++  + +S   + V+ G+ +GD SLKI KGYKNAR+  RHS  Q  +  WK        S G  SI LQKPDGF  N         K+   + A   LT +H+    +NQ+ IKR WLNHM    L+  WLDDGS+  N R+GVFC +S       IL +YL+ VW I   + + + +  + +  YRL+++N + + KL  +I P+  V  + +++  + K      N+    QRW SE+
Sbjct:    8 FLSRKEIQTIPLSDRCREVILGSLLGDGSLKIAKGYKNARLTIRHSIVQEEYLRWKAEELQEIASAG--SIQLQKPDGFSANK--------KISFQSRALPQLTVIHRKAYESNQLRIKRSWLNHMTELSLLVWWLDDGSIIANGRKGVFCTESFDLNAHRILQRYLKVVWGISTTIGKHSSQ--SDEQKYRLYLNNSE-LRKLFLLIMPLFCVSNLRFELHGMLKKFCLQYNDPQFQQRWISEM 239          
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A4Q3EU45_9SPHI (LAGLIDADG_2 domain-containing protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EU45_9SPHI)

HSP 1 Score: 139 bits (350), Expect = 1.950e-35
Identity = 93/267 (34.83%), Postives = 142/267 (53.18%), Query Frame = 1
Query:    7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNR-RQGVFCLDSTPYQQQVILSKYLRNVWAIDCQV----KQT---------NIKMTNGQIS----------------YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEI 717
            L +K+++ +S+S  ++SV+ G+ +GD SLKI  GYKNAR   RHS KQ ++FF+K  V L        S+  Q PDG+          L KL+  + A   L+E+H +   NN++ I+RKWLNH+  + L   W DDGS+ +  R+GV C D     + ++L+KYL  VW +  +V    KQ+         NI+ T+                    YRL+ S +  +   LRII P +P +EM YK++   K+ + L +RW SE+
Sbjct:   77 LSRKRLSNISLSCPERSVILGSLLGDGSLKIYPGYKNARFSFRHSKKQDAYFFYK--VGLLSKIENPGSVQRQAPDGWS--------SLEKLRYQSRALPALSEIHNVTHKNNKLRIRRKWLNHLTAHSLAIWWFDDGSIISGGRRGVICTDGFSEAECLLLAKYLLVVWKVSARVGRVSKQSSKGAKPSMQNIESTSSPNPDGRGGEQDPRLRENNYYRLWFSTEQ-LKSFLRIILPYVPCKEMFYKVLLTYKD-LQLQERWISEV 331          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A0S2IEC1_9CHLO3.660e-9048.94Putative LAGLIDADG homing endonuclease n=1 Tax=Ste... [more]
Q39560_9CHLO4.110e-7547.69Putative LAGLIDADG homing endonuclease n=1 Tax=Lob... [more]
A0A1L2M5A9_9CHLO1.420e-7146.95Putative LAGLIDADG homing endonuclease n=1 Tax=Chl... [more]
A0A522U6F6_9BACT9.600e-4040.17LAGLIDADG_2 domain-containing protein n=1 Tax=Pate... [more]
A0A524GE24_9BACT1.250e-3941.23LAGLIDADG_2 domain-containing protein n=1 Tax=Parc... [more]
A0A519TQ83_9BACT8.860e-3932.48LAGLIDADG_2 domain-containing protein n=1 Tax=Hyme... [more]
A0A6B9VYY9_9CHLO1.710e-3739.02Putative LAGLIDADG homing endonuclease n=2 Tax=Cau... [more]
A0A0S2IDN7_HAELA6.450e-3735.11LAGLIDADG DNA endonuclease family protein n=2 Tax=... [more]
A0A097KMG7_9CHLO1.000e-3636.33Putative LAGLIDADG homing endonuclease n=1 Tax=Xyl... [more]
A0A4Q3EU45_9SPHI1.950e-3534.83LAGLIDADG_2 domain-containing protein n=1 Tax=Sphi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103332contigP-canaliculata_contig103332:144..956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue4.1e-14
Seed eggNOG ortholog3218.PP1S353_5V6.1
EggNOG free text desc.LAGLIDADG DNA endonuclease family
EggNOG OGs2C2PQ@1,2SRGK@2759,380EU@33090,3GQE3@35493
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size813
Cds size792
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.7615767-CDS-P-canaliculata_contig103332:143..9351622815604.7615767-CDS-P-canaliculata_contig103332:143..935Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103332 144..935 -
1693494161.7581055-CDS-P-canaliculata_contig103332:143..9351693494161.7581055-CDS-P-canaliculata_contig103332:143..935Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103332 144..935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.7723088-UTR-P-canaliculata_contig103332:935..9561622815604.7723088-UTR-P-canaliculata_contig103332:935..956Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103332 936..956 -
1693494161.7706509-UTR-P-canaliculata_contig103332:935..9561693494161.7706509-UTR-P-canaliculata_contig103332:935..956Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103332 936..956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103332.474.1prot_P-canaliculata_contig103332.474.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103332 144..935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103332.474.1

>prot_P-canaliculata_contig103332.474.1 ID=prot_P-canaliculata_contig103332.474.1|Name=mRNA_P-canaliculata_contig103332.474.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=264bp
MAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWK
WMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTEL
HQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPY
QQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRI
IAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQ
IMINITEEDIVHS*
back to top

mRNA from alignment at P-canaliculata_contig103332:144..956-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103332.474.1 ID=mRNA_P-canaliculata_contig103332.474.1|Name=mRNA_P-canaliculata_contig103332.474.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at P-canaliculata_contig103332:144..956- (Pelvetia canaliculata dioecious)
GTGTTTTTACAAAAAAAACAAATGGCTCAGGTATCTATTTCAACTATTCA GAAATCGGTTTTATGTGGTACATGTGTTGGAGATTCTTCGTTAAAAATAA CAAAAGGTTATAAAAATGCTCGCATTCAATGTCGGCATTCAACAAAACAA GCATCTTGGTTTTTTTGGAAATGGATGGTTTGTTTAAACGATTATTCAAA TGGTCTCAGTAGTATTACTTTGCAAAAACCAGATGGTTTTCAACTTAATG GATTATCTGAACAAAAAAGGTTAGGTAAATTAAAAATAACTACCCATGCA AGAGAAGATTTAACTGAACTACATCAACTAATCTGTCATAACAATCAAAT TGAAATAAAACGAAAATGGTTAAATCATATGAATAATTATTTTTTAATGA CCTTGTGGTTAGATGACGGGAGCTTATATAATAGAAGACAAGGTGTCTTT TGTTTAGACTCGACGCCTTATCAACAACAAGTTATTTTATCCAAATATTT AAGAAATGTTTGGGCAATTGACTGCCAGGTTAAACAAACAAACATTAAAA TGACAAATGGCCAAATCAGCTATCGTCTGTTTATAAGCAATCAAGACAGT ATTTTAAAACTTTTAAGAATAATCGCACCGATTATTCCTGTTCGCGAAAT GCTTTATAAGATTATGTTTGTTCCAAAAAATAATATTGATTTGTTACAAC GCTGGACTTCTGAAATTATTGATCTTGTTCATGTAGATTTTAAAGACCAA GTCAAAAACGATTATGATCAAATTATGATCAATATTACAGAAGAAGATAT AGTCCACTCTTAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig103332:144..956-

>mRNA_P-canaliculata_contig103332.474.1 ID=mRNA_P-canaliculata_contig103332.474.1|Name=mRNA_P-canaliculata_contig103332.474.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at P-canaliculata_contig103332:144..956- (Pelvetia canaliculata dioecious)
ATGGCTCAGGTATCTATTTCAACTATTCAGAAATCGGTTTTATGTGGTAC
ATGTGTTGGAGATTCTTCGTTAAAAATAACAAAAGGTTATAAAAATGCTC
GCATTCAATGTCGGCATTCAACAAAACAAGCATCTTGGTTTTTTTGGAAA
TGGATGGTTTGTTTAAACGATTATTCAAATGGTCTCAGTAGTATTACTTT
GCAAAAACCAGATGGTTTTCAACTTAATGGATTATCTGAACAAAAAAGGT
TAGGTAAATTAAAAATAACTACCCATGCAAGAGAAGATTTAACTGAACTA
CATCAACTAATCTGTCATAACAATCAAATTGAAATAAAACGAAAATGGTT
AAATCATATGAATAATTATTTTTTAATGACCTTGTGGTTAGATGACGGGA
GCTTATATAATAGAAGACAAGGTGTCTTTTGTTTAGACTCGACGCCTTAT
CAACAACAAGTTATTTTATCCAAATATTTAAGAAATGTTTGGGCAATTGA
CTGCCAGGTTAAACAAACAAACATTAAAATGACAAATGGCCAAATCAGCT
ATCGTCTGTTTATAAGCAATCAAGACAGTATTTTAAAACTTTTAAGAATA
ATCGCACCGATTATTCCTGTTCGCGAAATGCTTTATAAGATTATGTTTGT
TCCAAAAAATAATATTGATTTGTTACAACGCTGGACTTCTGAAATTATTG
ATCTTGTTCATGTAGATTTTAAAGACCAAGTCAAAAACGATTATGATCAA
ATTATGATCAATATTACAGAAGAAGATATAGTCCACTCTTAAATGGCTCA
GGTATCTATTTCAACTATTCAGAAATCGGTTTTATGTGGTACATGTGTTG
GAGATTCTTCGTTAAAAATAACAAAAGGTTATAAAAATGCTCGCATTCAA
TGTCGGCATTCAACAAAACAAGCATCTTGGTTTTTTTGGAAATGGATGGT
TTGTTTAAACGATTATTCAAATGGTCTCAGTAGTATTACTTTGCAAAAAC
CAGATGGTTTTCAACTTAATGGATTATCTGAACAAAAAAGGTTAGGTAAA
TTAAAAATAACTACCCATGCAAGAGAAGATTTAACTGAACTACATCAACT
AATCTGTCATAACAATCAAATTGAAATAAAACGAAAATGGTTAAATCATA
TGAATAATTATTTTTTAATGACCTTGTGGTTAGATGACGGGAGCTTATAT
AATAGAAGACAAGGTGTCTTTTGTTTAGACTCGACGCCTTATCAACAACA
AGTTATTTTATCCAAATATTTAAGAAATGTTTGGGCAATTGACTGCCAGG
TTAAACAAACAAACATTAAAATGACAAATGGCCAAATCAGCTATCGTCTG
TTTATAAGCAATCAAGACAGTATTTTAAAACTTTTAAGAATAATCGCACC
GATTATTCCTGTTCGCGAAATGCTTTATAAGATTATGTTTGTTCCAAAAA
ATAATATTGATTTGTTACAACGCTGGACTTCTGAAATTATTGATCTTGTT
CATGTAGATTTTAAAGACCAAGTCAAAAACGATTATGATCAAATTATGAT
CAATATTACAGAAGAAGATATAGTCCACTCTTAA
back to top