mRNA_P-canaliculata_contig103332.474.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A0S2IEC1_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Stephanosphaera pluvialis TaxID=51712 RepID=A0A0S2IEC1_9CHLO) HSP 1 Score: 278 bits (710), Expect = 3.660e-90 Identity = 139/284 (48.94%), Postives = 179/284 (63.03%), Query Frame = 1
Query: 22 MAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRL--------------------------------GKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQIM 777
MA++ I +++KSVLCGTC+ DSSL+I K Y NARIQCRHS++QASWFFWKW VCL DY G +S DG+Q + ++ + GKL + T A LT LH + NN+ + R WLNHMN+YFLM +WLDDGSL RQG CLDSTP QQ + YL+ VW I+ V T +KM NG+ YR+ I NQ+S+L+LLRI+APIIPV+EMLYKIMFVP NN DLLQRW SE+ LV +F+ ++++Y I+
Sbjct: 1 MAKLPIDSLRKSVLCGTCLTDSSLRIAKNYANARIQCRHSSRQASWFFWKWAVCLKDYIKGDTSFVFNNADGYQAKSIEKEGEILSPFRGGGVNPPTRKGEIPEAPVPEGTGASGIGKLSVATKALPALTALHSIFTKNNKDYVSRSWLNHMNDYFLMVVWLDDGSLSKSRQGYICLDSTPKNQQQVFVDYLKTVWEIEAYVVDTKLKMRNGEQRYRIAIKNQESLLRLLRIVAPIIPVKEMLYKIMFVPFNNSDLLQRWASEVSILVLPEFRSYIRDEYQAII 284
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: Q39560_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Lobochlamys segnis TaxID=52035 RepID=Q39560_9CHLO) HSP 1 Score: 238 bits (608), Expect = 4.110e-75 Identity = 124/260 (47.69%), Postives = 170/260 (65.38%), Query Frame = 1
Query: 22 MAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQL-NGLSEQK-----------RLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDY 765
MAQV ++ I+KSVLCGT +GD+S I+ GYKNAR Q HST Q +WFFWK+ V L D++ + + +P G QL N SE GKLKI + A LTELH +IC+ N+ I+R WLNHMNNYFLMT+WLDDGS+ + RQG+ +S P QQ I YL VW I+ +++ T KM NGQ + R+ I +Q+++L LLR IAP++PVREMLYK+ F+ ++N+ L QRW +E+ LV +F +++ Y
Sbjct: 1 MAQVPLTEIEKSVLCGTILGDASFAISDGYKNARFQSNHSTNQLTWFFWKFFVILKDFTKP-TGLIYSEPSGKQLINQTSEASFFEPGEDSLEIPFGKLKIASLADAKLTELHSVICNKNRKTIERSWLNHMNNYFLMTVWLDDGSMTSGRQGILSFNSYPADQQQIFRDYLLQVWGIETRLQDTGQKMQNGQPNCRISIKDQENLLNLLRYIAPVVPVREMLYKVCFMAESNLSLSQRWKTEVKGLVRPEFAEEIDKIY 259
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A1L2M5A9_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A1L2M5A9_9CHLO) HSP 1 Score: 231 bits (590), Expect = 1.420e-71 Identity = 123/262 (46.95%), Postives = 167/262 (63.74%), Query Frame = 1
Query: 7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQ-KRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQIMINI 786
L+ KQ+AQ+ ++T++ SVL GT GD+S+ I KGYKNAR QCRHST+Q+ WFFWKW+ L + LSS+ Q DG+QL + + LGKLK+TT A E+LT++H +I + +R WLNHM +YFLMTLWLDDGS++ QG F LD + S YLR VW ++ V G +R+ I++ +L LLRIIAPIIPVR MLYK+ FV N+ +L QRW E++ LV +FKD+VK Y + +
Sbjct: 60 LEGKQVAQLPLTTLETSVLFGTISGDTSINIDKGYKNARCQCRHSTRQSEWFFWKWITVLGRFCE-LSSMLWQASDGYQLASAEKPGELLGKLKVTTRACEELTQVHSIIVTKGKKGFRRSWLNHMTDYFLMTLWLDDGSIHAGGTQGEFALDMHEVADLELFSDYLRTVWGVNNYVVDKKEYTKCGHRRHRINIASPKDLLNLLRIIAPIIPVRSMLYKVYFVSHNDSNLTQRWACELVSLVKDEFKDEVKTFYANLQTQV 320
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A522U6F6_9BACT (LAGLIDADG_2 domain-containing protein n=1 Tax=Patescibacteria group bacterium TaxID=2052139 RepID=A0A522U6F6_9BACT) HSP 1 Score: 147 bits (372), Expect = 9.600e-40 Identity = 94/234 (40.17%), Postives = 141/234 (60.26%), Query Frame = 1
Query: 25 AQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQIS--YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEI 717
+ V +S K ++ G+ +GD SLKI + YKNAR RHS Q ++F WK + L++ S+ S+ LQ+ D NG S+Q KL+ + A E LTE+H L C NN++EI+RKWLN M+ L W DDGS+ N R+GV C D + +L+KYL+ VW I +V+ +I NG+ +R+++ + + + KLLRII P V E+L K++ + N++ L +RW SEI
Sbjct: 5 SNVPLSNGVKEIILGSLLGDGSLKIHRPYKNARFSFRHSVIQKAYFDWK-VRQLSEISSD-KSVWLQEQD----NGFSKQ---AKLRYQSKALEALTEMHNLTCKNNRLEIRRKWLNFMSPLSLAIWWFDDGSIISNGRKGVICTDGFDEKAVQVLAKYLQTVWKI--KVRVASITKVNGKKEKYFRIWLRSTEELKKLLRIILPYTKVEEVLPKVILM-YNDVQLQERWISEI 226
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A524GE24_9BACT (LAGLIDADG_2 domain-containing protein n=1 Tax=Parcubacteria group bacterium TaxID=2026774 RepID=A0A524GE24_9BACT) HSP 1 Score: 147 bits (371), Expect = 1.250e-39 Identity = 94/228 (41.23%), Postives = 133/228 (58.33%), Query Frame = 1
Query: 52 KSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQIS--YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDL 726
+ V+ G+ +GD SLKI Y NAR RHST Q +FFWK L + S G SS QK DGF KL+ + A E LT+L+QL+ NN +EI+RKWLN + LM WLDDGSL N ++GVFC DS ++Q +L +YL VW + + + + + NG+ YRL+I + + + K LRII P + + ML K++ + K++ +L QRW SE+ L
Sbjct: 12 REVILGSLLGDGSLKIHSSYINARFSFRHSTHQKEYFFWK-AEKLKEIS-GNSSFWQQKADGFGGE---------KLRYQSLALESLTDLYQLVSKNNNLEIRRKWLNKLTPLSLMIWWLDDGSLIGNGKRGVFCTDSFSLEEQKLLVRYLYKVWGVKVSIGKIH-RERNGKAKEYYRLWIRSSEELKKFLRIILPYMSMPTMLPKVLILYKDS-ELQQRWISEVSHL 226
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A519TQ83_9BACT (LAGLIDADG_2 domain-containing protein n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519TQ83_9BACT) HSP 1 Score: 148 bits (373), Expect = 8.860e-39 Identity = 101/311 (32.48%), Postives = 160/311 (51.45%), Query Frame = 1
Query: 7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNR-RQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTN----------------IKMTNGQIS----------------------------YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEIIDLVHVDFKDQVKNDYDQIMINITEEDIV 804
L +K++A +S+S ++SV+ G+ +GD SLKI GYKNAR RHS KQ+++FF+K + S+G S+ Q PDG+ LGK + + A L+E+H + NN++EI+RKWLNH+ + L W DDGS+ + R+GV C D + ++L+KYL VW I+ +V + + K+T + YRL++S + + LRII P +P +EMLYK++ K+ + L +RW SE+ D K + + +++I +E DIV
Sbjct: 58 LSRKRLANISLSCSERSVILGSLLGDGSLKIYPGYKNARFSFRHSEKQSAYFFYKVDLLSGIRSSG--SVQRQAPDGWS--------SLGKTRYQSRALPALSEIHNVTHKNNKLEIRRKWLNHLTAHSLAIWWFDDGSIISGGRRGVLCTDGFSEAECLLLAKYLLVVWKINARVGRVSKRPRKVSLSTNQAANPCKLTQNSLGSAKSPPPFDLNPHERKGEESLRLQGNNYYRLWLSTEQ-LKSFLRIILPYVPCKEMLYKVLLTYKD-LQLQERWISEVEKGCPQDLKPFLASCFEKIKKKTSENDIV 356
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A6B9VYY9_9CHLO (Putative LAGLIDADG homing endonuclease n=2 Tax=Caulerpa TaxID=76312 RepID=A0A6B9VYY9_9CHLO) HSP 1 Score: 142 bits (358), Expect = 1.710e-37 Identity = 96/246 (39.02%), Postives = 138/246 (56.10%), Query Frame = 1
Query: 7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQIS--YRLFISNQDSILKLLRIIAPIIPVR-----EMLYKIMFVPKNNIDLLQRWTSEII 720
L KK+ +Q+S+S K++L G+ +GD SLKI K YKNAR RHS Q ++ WK + L + S S+ LQKP G+ QK K + A+E LTE++ +I N++ I+RKWLN + L WLDDGS+ N R+GVFC D ++ +L +Y VW I+ + + NGQ +RL++ N S+ KL RII P IP+ MLYK + KN +L +RW SE++
Sbjct: 7 LSKKKFSQISLSDSCKAILLGSLLGDGSLKIYKPYKNARFWIRHSISQKDYYNWK-IKELKEISTKKSN-QLQKPSGYS------QKE--KFLFQSAAKEQLTEIYNIIYRKNRLRIRRKWLNFLTPLSLAIWWLDDGSIIDNGRRGVFCTDGFSKKEHEVLKRYFYVVWKIEVHIGVLK-RFYNGQHKNYFRLYLKN-TSLKKLFRIIMPHIPISGYLMSSMLYKFCLLYKNT-ELQERWISEMV 239
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A0S2IDN7_HAELA (LAGLIDADG DNA endonuclease family protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A0S2IDN7_HAELA) HSP 1 Score: 141 bits (356), Expect = 6.450e-37 Identity = 92/262 (35.11%), Postives = 143/262 (54.58%), Query Frame = 1
Query: 7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQI-EIKRKWLNHMNNYFLMTLWLDDGSLYNRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQV----KQTNIK----MTNGQIS------------------YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTS 711
L KK+M ++ +S KSV+ GT +GD++L I K +KNAR Q RH Q +F WK + + + ++ Q+PDG+Q ++K +GK T A +LT++ +++C + + +IKR WLNH+ LM LWLDDGSL R++GV C + ++ +ILSKYL+ VW ID V K+ N+ ++N + YR+ I N ++ K R+I P IP M+YK+ + + +L QRW S
Sbjct: 18 LSKKRMERIKLSKRIKSVILGTLLGDAALNIQKNFKNARFQMRHGHVQKEYFDWKVQILKSLGTE--KAVHFQEPDGYQ-----KKKHVGKWHFQTRALPELTQIFEIVCSSKKRKQIKRSWLNHLTKESLMVLWLDDGSLL-RKKGVLCTEGFSKKENLILSKYLKQVWKIDTNVIPILKKRNLPTPLVLSNKGVGRFHHPSVEREVEQEQRFYYRIRI-NTTNLTKFFRLIIPFIPCASMVYKVC-IDYVDPELKQRWIS 269
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A097KMG7_9CHLO (Putative LAGLIDADG homing endonuclease n=1 Tax=Xylochloris irregularis TaxID=480381 RepID=A0A097KMG7_9CHLO) HSP 1 Score: 140 bits (352), Expect = 1.000e-36 Identity = 89/245 (36.33%), Postives = 132/245 (53.88%), Query Frame = 1
Query: 4 FLQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLY-NRRQGVFCLDSTPYQQQVILSKYLRNVWAIDCQVKQTNIKMTNGQISYRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPK------NNIDLLQRWTSEI 717
FL +K++ + +S + V+ G+ +GD SLKI KGYKNAR+ RHS Q + WK S G SI LQKPDGF N K+ + A LT +H+ +NQ+ IKR WLNHM L+ WLDDGS+ N R+GVFC +S IL +YL+ VW I + + + + + + YRL+++N + + KL +I P+ V + +++ + K N+ QRW SE+
Sbjct: 8 FLSRKEIQTIPLSDRCREVILGSLLGDGSLKIAKGYKNARLTIRHSIVQEEYLRWKAEELQEIASAG--SIQLQKPDGFSANK--------KISFQSRALPQLTVIHRKAYESNQLRIKRSWLNHMTELSLLVWWLDDGSIIANGRKGVFCTESFDLNAHRILQRYLKVVWGISTTIGKHSSQ--SDEQKYRLYLNNSE-LRKLFLLIMPLFCVSNLRFELHGMLKKFCLQYNDPQFQQRWISEM 239
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Match: A0A4Q3EU45_9SPHI (LAGLIDADG_2 domain-containing protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EU45_9SPHI) HSP 1 Score: 139 bits (350), Expect = 1.950e-35 Identity = 93/267 (34.83%), Postives = 142/267 (53.18%), Query Frame = 1
Query: 7 LQKKQMAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKWMVCLNDYSNGLSSITLQKPDGFQLNGLSEQKRLGKLKITTHAREDLTELHQLICHNNQIEIKRKWLNHMNNYFLMTLWLDDGSLYNR-RQGVFCLDSTPYQQQVILSKYLRNVWAIDCQV----KQT---------NIKMTNGQIS----------------YRLFISNQDSILKLLRIIAPIIPVREMLYKIMFVPKNNIDLLQRWTSEI 717
L +K+++ +S+S ++SV+ G+ +GD SLKI GYKNAR RHS KQ ++FF+K V L S+ Q PDG+ L KL+ + A L+E+H + NN++ I+RKWLNH+ + L W DDGS+ + R+GV C D + ++L+KYL VW + +V KQ+ NI+ T+ YRL+ S + + LRII P +P +EM YK++ K+ + L +RW SE+
Sbjct: 77 LSRKRLSNISLSCPERSVILGSLLGDGSLKIYPGYKNARFSFRHSKKQDAYFFYK--VGLLSKIENPGSVQRQAPDGWS--------SLEKLRYQSRALPALSEIHNVTHKNNKLRIRRKWLNHLTAHSLAIWWFDDGSIISGGRRGVICTDGFSEAECLLLAKYLLVVWKVSARVGRVSKQSSKGAKPSMQNIESTSSPNPDGRGGEQDPRLRENNYYRLWFSTEQ-LKSFLRIILPYVPCKEMFYKVLLTYKD-LQLQERWISEV 331 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103332.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig103332.474.1 >prot_P-canaliculata_contig103332.474.1 ID=prot_P-canaliculata_contig103332.474.1|Name=mRNA_P-canaliculata_contig103332.474.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=264bp MAQVSISTIQKSVLCGTCVGDSSLKITKGYKNARIQCRHSTKQASWFFWKback to top mRNA from alignment at P-canaliculata_contig103332:144..956- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig103332.474.1 ID=mRNA_P-canaliculata_contig103332.474.1|Name=mRNA_P-canaliculata_contig103332.474.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at P-canaliculata_contig103332:144..956- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig103332:144..956- >mRNA_P-canaliculata_contig103332.474.1 ID=mRNA_P-canaliculata_contig103332.474.1|Name=mRNA_P-canaliculata_contig103332.474.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at P-canaliculata_contig103332:144..956- (Pelvetia canaliculata dioecious)back to top |