mRNA_P-canaliculata_contig103276.467.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: UPI001E4A6A87 (hypothetical protein n=2 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E4A6A87) HSP 1 Score: 202 bits (514), Expect = 4.980e-59 Identity = 113/304 (37.17%), Postives = 175/304 (57.57%), Query Frame = 1
Query: 40 VFCVPDNVLGQLGGXXXXXXXGMGGFSTSSHFPWD--------RYVFAQTIADLLTTHTKSEDVTWDNLGGEGR-VSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMIGRDKTKGRIQLSIGLSSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRWSAAQ 924
+F +PDN+L Q GG GMG + + + + D++ TH + W GEG +S++G +I+TQ+ H +AA+LD+L+ IQ+E+RL++I++ +++++ +E L KLA A +SLRC+NH + +I+SGL RSY++S PVVG N + RS Y P+I+T +LG+FG V+P I D +GRIQL I ++S PEE L+A F + DRVEIET L T + A++WT+AG + D+ SI+ SGQALPH+ L++W+ +
Sbjct: 81 MFRIPDNILPQFGG-------GMGAMXXXXXXXXXXQFVHQHPQQMTREALKDVIITHVSGDTFKWMETSGEGGDLSIVGPLMIVTQSEEAHQKIAALLDLLKAGSNPSPTIQLEIRLVQIEAGQTKALSNATTENLVKLANEAHAARISLRCDNHRIAEIASGLRRSYVMSLTPVVGSNDVHIAS------RSSAYRPEIQTTLLGLFGRVKPAIAADGKQGRIQLGIQMASAPEEVLSATFGTGQTTDRVEIETATLETTVSVDADKWTMAGTVAITDATSIVQSGQALPHVAILMQWTVVK 371
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: A0A518HZP9_9BACT (Uncharacterized protein n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HZP9_9BACT) HSP 1 Score: 196 bits (499), Expect = 1.050e-56 Identity = 118/295 (40.00%), Postives = 173/295 (58.64%), Query Frame = 1
Query: 43 FCVPDNVLGQLGGXXXXXXXGMGGFSTSSHFPWDRYVFAQTIADLLTTHTKSEDVTWDNLGGEG-RVSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMIGRDKTKGRIQLSIGLSSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRWSAAQ 924
F +PDN+L QL XXXXXXX G + ++ P + + + ++ H +D W +L GEG ++S++ + +I+T A H V +LD+LR +QV++R++E+ S +AS S + L KLA A LSLRC+NH V K+SSGL RSY+VS PVVG NG ++ G Y P+ + +LG+FG ++P I + KGR+ L I L+SGPEE + A F S+DRVE+ET +L + A++WT+AG V S +TSG+ALPH+ LVRW +
Sbjct: 92 FRIPDNILPQLDXXXXXXXXXXAG-AAQTYLP--SRMTREALEQVVLDHLSDDDTRWLHLDGEGGKLSIVASMMIVTHTQAVHTRVTQLLDLLRVGNNTSPTVQVDVRIVEVASDQSASSLASDAASLEKLANDPSAARLSLRCDNHRVAKVSSGLRRSYVVSLTPVVGSNGT----IDVNTGNQTAYRPETYSPLLGLFGRIKPEIDAEGKKGRLHLGIQLASGPEEVVAATFGTGQSMDRVELETAQLATSIATVADKWTLAGSVAVTSPTSSITSGEALPHLAMLVRWQVVE 379
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: A0A518L998_9BACT (Uncharacterized protein n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A518L998_9BACT) HSP 1 Score: 195 bits (496), Expect = 3.340e-56 Identity = 118/295 (40.00%), Postives = 172/295 (58.31%), Query Frame = 1
Query: 43 FCVPDNVLGQLGGXXXXXXXGMGGFSTSSHFPWDRYVFAQTIADLLTTHTKSEDVTWDNLGGEG-RVSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMIGRDKTKGRIQLSIGLSSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRWSAAQ 924
F +PDN+L QL GXXXXXXX M G S + + P + + + ++ H +D W + G G ++S++ + +I+T A H V +LD+LR +QV++R++E+ S+ +A+ S + L KLA A LSLRC+NH V K+SSGL RSY+VS PVVG NG ++ G Y P+ + +LG+FG ++P I D KGR+ L I L+SGPEE + A F S+DRVE+ET L + A++WT+AG V S +TSG+AL H+ LVRW +
Sbjct: 97 FRIPDNILPQLDGXXXXXXXXMPGPSPT-YLP--SRMTREALEQVVLDHLSDDDTAWLTIDGAGGKLSIVASMMIVTHTQAVHTRVTQLLDLLRVGNNTSPTVQVDVRIVEVGSEQSATALASDAASLEKLANDASAARLSLRCDNHRVAKVSSGLRRSYVVSLTPVVGSNGT----IDVNTGNQTAYRPETYSPLLGLFGRIKPEIDADGKKGRLHLGIQLASGPEEVVAATFGTGQSMDRVELETAELATSIATVADKWTLAGSVAVTSPTSSITSGEALSHLAMLVRWHVVE 384
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: A0A5B9M7T6_9BACT (Uncharacterized protein n=2 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9M7T6_9BACT) HSP 1 Score: 189 bits (479), Expect = 6.740e-54 Identity = 117/309 (37.86%), Postives = 163/309 (52.75%), Query Frame = 1
Query: 1 GGVMGXXXXXXXXVFCVPDNVLGQLGGXXXXXXXGMGGFSTSS--HFPWDRYVFAQTIADLLTTHTKSEDVTWDNLGGEG-RVSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMIGRDKTKGRIQLSIGLSSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRWSA 918
GG G F +PDN+L Q G GMG H +R + + L H +E+ W +L G G ++S++ + +I+T A H VA L++LR IQV++R++E+ S + S E L LA A LSLRC+NH V +SSGL RSY+VS PVVG NG ++ G Y P+ + +LG+FG ++P + + GRI L I L+SGPEE + A F S+DRVE+ET +L + AAN WT+AG V S +TSG+ALPH+ LVRW A
Sbjct: 66 GGADGMGAEMGGGFFRIPDNILPQFAG-------GMGXXXXXXGVHVLPNRMT-REALEQLTLDHLSNENTQWLDLDGVGGKLSIVASMMIVTHTEATHTKVAEFLELLRVGNHTSPTIQVDVRIVEVASDQSVSDLTKDLESLEALANDSSAARLSLRCDNHRVATVSSGLRRSYVVSLTPVVGSNGS----IDVTTGNQTAYRPETYSPLLGLFGRIKPEVDAEGKSGRIHLGIQLASGPEEVVAATFGTGQSIDRVELETAQLATSIATAANTWTLAGSVAVTSPTSSITSGEALPHLAVLVRWQA 362
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: UPI0011A1508A (hypothetical protein n=1 Tax=Rosistilla oblonga TaxID=2527990 RepID=UPI0011A1508A) HSP 1 Score: 137 bits (344), Expect = 5.330e-34 Identity = 79/233 (33.91%), Postives = 130/233 (55.79%), Query Frame = 1
Query: 226 GEGRVSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMIGR----DKTKGRIQLSIGLSSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRW 912
G+ ++S LG L+ GH + AVL LRE+ I+V LRL+ I+S + + + + LA+ + A+ ++RC N +G I+SG RS+++SA+PVVG NG N+ GRSVGYSP++ T M+G+ G VRP++ R D +I + I S G +E L+A F + ++DR+++ + ++WT+AG++T D SG+ H+ +V+W
Sbjct: 143 GDAQLSHLGHLLVAKATQRGHQELEAVLQTLRENSLSTPTIEVALRLVAIESAESGEFHRMETADIEALAKRKDAISATVRCGNGRIGTIASGARRSFVISAVPVVGANGS-----NSSSGRSVGYSPRVITPMIGLVGKVRPILDRGASGDSRSAQIDIGIAYSIGSDEILSATFGNGTTIDRIDLTAMEYESQVNVVEDRWTLAGMSTATDG-----SGEQQGHMAVVVQW 365
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: A0A518IYY3_9BACT (Uncharacterized protein n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IYY3_9BACT) HSP 1 Score: 127 bits (320), Expect = 1.260e-30 Identity = 87/271 (32.10%), Postives = 146/271 (53.87%), Query Frame = 1
Query: 130 HFPWDRYVFAQTIADLLTTHTKSEDVTWDNLG-GEGRVSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMIGRDKTKGR---IQLSIGL--SSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRWSAAQ 924
H PW+ V +AD+L+ +LG G+ ++ V L+ + GHD +A VL +LRE +++ +RL+ ID A + + LA ++ A+ ++RC N G I+SG RS+++SA+PVVG + G + GR+VGY+P++ T M+G+ G VRP+I + ++G+ QL IG+ S G +E L+A F ++DR+++ + +A NQWT+AGV+T+ D +G + LV+W A+
Sbjct: 112 HSPWNSRVI--DLADVLS-----------DLGIGDAQLMVYDKLLLARATLRGHDELADVLQMLREKSQASPTMEIAMRLVPIDPNTAIDSSSLKPTDIEALAATKNAISATVRCGNGRTGSIASGARRSFVISAVPVVG-----ASGSSDSNGRNVGYTPRVITPMVGLVGKVRPVI-KVASQGQPRAAQLDIGIAYSVGADEILSATFGTGQTIDRIDLTAMEFESQLSAVENQWTLAGVSTITDG-----NGAQEGLMAVLVQWREAR 358
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Match: A0A518JXC9_9BACT (Uncharacterized protein n=2 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JXC9_9BACT) HSP 1 Score: 125 bits (314), Expect = 9.390e-30 Identity = 82/271 (30.26%), Postives = 143/271 (52.77%), Query Frame = 1
Query: 130 HFPWDRYVFAQTIADLLTTHTKSEDVTWDNLG-GEGRVSVLGTSLIITQNVAGHDAVAAVLDILRESRGKRMPIQVELRLIEIDSKAAASVNDSGSEVLNKLAQSEKAMMLSLRCENHHVGKISSGLSRSYIVSAIPVVGGNGLDSGGLNTGGGRSVGYSPQIETKMLGIFGHVRPMI-----GRDKTKGRIQLSIGLSSGPEETLTAEFSDEISLDRVEIETTRLNATATAAANQWTVAGVTTVADSKSILTSGQALPHIVTLVRWSAAQ 924
H PW+ V +AD+L+ +LG G+ ++ V L+ + GH+ +A VL +LRE +++ +RL+ I AA + + + LA ++ A+ ++RC N G I+SG RS+++SA+PVVG NG GR+VGY+P++ T M+G+ G VRP++ G+ +T I + I S G +E L+A F ++DR+++ + + NQWT+AGV+T++D +G + +++W A+
Sbjct: 113 HGPWNSRVI--DLADVLS-----------DLGIGDAQLMVYDKLLLARATLRGHEELADVLQMLREKSQASPTMEIAMRLVPIAPDAAIDSSSLKATEIEALAAAKNAISATVRCGNGRTGSIASGARRSFVISAVPVVGANGSSDSN-----GRNVGYTPRVITPMIGLVGKVRPVLKEAPEGQPRT-ALIDVGIAYSVGSDEILSATFGTGQTIDRIDVTAVEFESQLSVVENQWTLAGVSTISDG-----NGAQEGLMAVVIQWREAR 359 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103276.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig103276.467.1 >prot_P-canaliculata_contig103276.467.1 ID=prot_P-canaliculata_contig103276.467.1|Name=mRNA_P-canaliculata_contig103276.467.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=306bp MGGGGGGGGGVFCVPDNVLGQLGGGGFGGGGGMGGFSTSSHFPWDRYVFAback to top mRNA from alignment at P-canaliculata_contig103276:44..970+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig103276.467.1 ID=mRNA_P-canaliculata_contig103276.467.1|Name=mRNA_P-canaliculata_contig103276.467.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at P-canaliculata_contig103276:44..970+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig103276:44..970+ >mRNA_P-canaliculata_contig103276.467.1 ID=mRNA_P-canaliculata_contig103276.467.1|Name=mRNA_P-canaliculata_contig103276.467.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at P-canaliculata_contig103276:44..970+ (Pelvetia canaliculata dioecious)back to top |