mRNA_P-canaliculata_contig10324.464.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10324.464.1
Unique NamemRNA_P-canaliculata_contig10324.464.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: D8LRQ6_ECTSI (Methyltransferase type 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ6_ECTSI)

HSP 1 Score: 494 bits (1273), Expect = 6.820e-176
Identity = 238/274 (86.86%), Postives = 256/274 (93.43%), Query Frame = 1
Query:    1 QDCVDLMMEKSKRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAGGSKSDRLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLLSQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPSNSYYNRDYLVLVEKP 822
            Q+CVD + EKSK GNEMV++LVQSLGSALVYPDAGNF+TNRKLWDNYAAEWEP+ASWVQKMA GSK++RLEVVGDEWS+R++V+RVI DFILPNVT ESNVGEIGCGGGRVT EVFRK GQLTCFDISKNMLKRTRDAVG+  CAGGGKV +VLLSQPRLPE  S SLDFVILYDVLVHVDLHITNKY+REIARVLKPGGKAFLSTANFLSPG  GWDRF AQDKYSVGGFYFMCPDMVRLML+KAGLRVVREG +DPSNSYYNRDYLVLV+KP
Sbjct:    2 QECVDTLTEKSKAGNEMVSNLVQSLGSALVYPDAGNFDTNRKLWDNYAAEWEPDASWVQKMAQGSKTERLEVVGDEWSTRDDVMRVINDFILPNVTEESNVGEIGCGGGRVTVEVFRKAGQLTCFDISKNMLKRTRDAVGEGVCAGGGKVIFVLLSQPRLPENASDSLDFVILYDVLVHVDLHITNKYIREIARVLKPGGKAFLSTANFLSPG--GWDRFNAQDKYSVGGFYFMCPDMVRLMLDKAGLRVVREGDHDPSNSYYNRDYLVLVQKP 273          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A7S2SUS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUS9_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.630e-91
Identity = 136/269 (50.56%), Postives = 183/269 (68.03%), Query Frame = 1
Query:   31 SKRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAG---GSKSDRLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLLSQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPSNSYYNRDYLVLVEKPEA 828
            ++ G+ MV  L++SL  A+VYPDAGNF+TNRKLWD YA EW+P   W+Q+M+     S    + +VGDEW+    + RV+ DFIL  V +   V E+G GGGRV   V   VG L C DIS  MLKR RD +   T      ++++ L+QPR P+ L  +  FV ++DV VHVDLH+ ++Y+ EI ++L PGGKAF+STAN ++ G  GW+RF  Q KY+VGGFYF+CPDMV  +++K GLR++R    DPSN YY+RDYLVLV+KP A
Sbjct:   20 AQEGSPMVLELLKSLNQAVVYPDAGNFDTNRKLWDLYAGEWDPAQPWLQQMSRDVQASLEQDIHIVGDEWAPPTHLDRVVQDFILTEVDSSCQVLEVGSGGGRVAARVAPHVGHLKCADISMEMLKRCRDTLQAHT-----NISFLHLTQPRFPDHLHGTFHFVYVFDVFVHVDLHLIHQYLSEIYKLLVPGGKAFISTANLMTSG--GWERFARQSKYTVGGFYFLCPDMVNRLIDKNGLRILRHADEDPSNVYYSRDYLVLVQKPTA 281          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A835Z8T5_9STRA (Methyltransferase type 12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8T5_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.390e-80
Identity = 133/292 (45.55%), Postives = 180/292 (61.64%), Query Frame = 1
Query:   49 MVASLVQSLGSALVY-PDAGNFETNRKLWDNYAAEWEPNASWVQKMAGGSKSD--------------------------------RLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLLSQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPS--NSYYNRDYLVLVEK 819
            M+A+L++SLG A+VY PDAGN +TNRKLWD YA+EW  +ASWVQ MA GS+                                      VG+EWS+ +E+++V+ +FILP +  +S   E+GCGGGRV  +V+  V  L C+DIS  ML R   A+     AG       LL+ P LP   + S DF+  +DVLVHVDLH++ +Y+RE+ R L   G+AFLS A+  S    GW+RF  Q K++VGGFYFMCP+MVR ++ KAGLR+VREG  + +  N YYNRD+L++VEK
Sbjct:   19 MIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDASWVQDMARGSRPGDGGPSATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEWSTSDELMQVVREFILPYLNPDSRAAELGCGGGRVAVQVYPHVSNLDCYDISPQMLTRCAAAL---KAAGARNATLQLLTAPALPAAAADSYDFLYCFDVLVHVDLHVSWRYLREVRRCLTERGRAFLSFASVCS--RLGWERFARQSKFTVGGFYFMCPEMVRFIVAKAGLRIVREGPPEGTTDNVYYNRDFLIVVEK 305          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A7S2UUH0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUH0_9STRA)

HSP 1 Score: 248 bits (634), Expect = 7.710e-79
Identity = 128/274 (46.72%), Postives = 171/274 (62.41%), Query Frame = 1
Query:   49 MVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAG--------GSKS---DRLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLLSQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPS-NSYYNRDYLVLVEKPEAIS 834
            M  SL+ SLGSALVYPD GNF TN+KLW+ YA EW P+  WV+ +A         GS S   D L+ VG EWS   ++  ++  F+   +  +  V EIGCGGGR+  +V  +V ++ C+DISK M+ +   A+   +      V++ +L +P   +      DF+  +DV+VH+DLH+ NKY  EI R LK  GKAF+STAN  S G  GW RF  Q KY+VGGFYF+CP+MVR +L K GLR V+EG  + S N Y NRDYLVLVEK + +S
Sbjct:    1 MAMSLINSLGSALVYPDQGNFVTNKKLWNLYAQEWSPSEDWVKDIARPNNSSQDIGSSSNEVDELKFVGQEWSPDTDLEEILQQFVYDYIDEDKLVAEIGCGGGRLAAKVAPRVKKMDCYDISKEMISQAEKALSFLS-----NVDFHILEEPSFSKNCEKLYDFIYCFDVMVHMDLHLINKYFGEIGRALKDDGKAFISTANITSTG--GWARFSKQRKYTVGGFYFLCPEMVRFLLHKNGLRPVKEGPIEESTNVYLNRDYLVLVEKSDEVS 267          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: W7TSG7_9STRA (Deacetylase sulfotransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSG7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.270e-71
Identity = 140/323 (43.34%), Postives = 178/323 (55.11%), Query Frame = 1
Query:   34 KRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNAS-----------------------WVQKMAGG----SKSD-----RLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLL---SQPRLPEE-------LSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPS-------------NSYYNRDYLVLVEK--PEAI 831
            + G  +V S++ SL  A+VY D GN ETNR+LW+ YA EW  N +                       WVQ+MA      SKS       L ++G EWSS E++  V+ DFILP +T ES V E+G GGGRV   V  K  +LTC DIS+ ML+  R A+     AG   + ++L+   S P LP +       L    DFV  +DVLVHVD+H     +REI R+LK  GKAFLSTAN LSP  +GW RF AQDKY+VGGFYF+ P++V  ML K G RVV+  +                 N YY RDYLV+VEK  PE +
Sbjct:   63 REGTSIVRSVINSLSGAMVYTDVGNVETNRRLWNRYAEEWHGNCARNGPYSGSARSPSSELPANKPNVWVQQMAANTAKTSKSTPYSLPALALIGQEWSSPEDLEEVVRDFILPYLTPESAVVEVGVGGGRVAALVLGKCMRLTCLDISERMLEAARTALAAHPAAGATVLEFILVGNDSNPSLPSQRVEYPVSLHGRCDFVYCFDVLVHVDVHTLYHTLREIRRLLKASGKAFLSTANILSP--AGWRRFAAQDKYTVGGFYFVSPEIVHGMLAKVGFRVVQHSEIPEGFKELSDTHGLAKGNLYYGRDYLVVVEKAPPEQM 383          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A6A7GCB0_9CRUS (Methyltransferase type 12 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GCB0_9CRUS)

HSP 1 Score: 223 bits (568), Expect = 1.670e-68
Identity = 120/285 (42.11%), Postives = 168/285 (58.95%), Query Frame = 1
Query:   16 LMMEKSKR-GNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAGGS-----------KSDRLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLL-----SQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPSNSYYNRDYLVLVEK 819
            L+  +SK  G   + +L+++LG+++VY ++ N   N+KLWD YA +W PN  WVQ+MA GS           K   +E +GDEWS R+  L V+  FI+ N+    +V EIG GGGRV + V   V  L CFD+S  MLK        +T +    V + LL     S P  P +L+S+ DFV L+DVLVHVD+H    Y ++I ++LKP GKA + TAN  +P  +GW RF  Q K+SV GFYF+ PD+V L+L K+G  ++     D  N Y +RDY V+V K
Sbjct:   15 LISSQSKHDGTSQIRNLLKNLGASVVYEES-NVVANKKLWDIYAKDWSPNKDWVQRMAHGSTESSSTPNIDGKKRGIECLGDEWSDRKSFLEVVDRFIVSNIKKSDSVLEIGSGGGRVASLVCPLVSSLHCFDVSSEMLK-----CAQKTLSKFNNVRFTLLESSTDSPPTFPIKLTSTFDFVYLFDVLVHVDIHTQFNYFQQIFQLLKPDGKALIHTANLCAP--NGWKRFEKQKKFSVAGFYFVTPDLVDLLLAKSGFEIIERSSIDERNVYLSRDYFVVVRK 291          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: F0XX81_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX81_AURAN)

HSP 1 Score: 222 bits (566), Expect = 2.700e-68
Identity = 121/280 (43.21%), Postives = 167/280 (59.64%), Query Frame = 1
Query:   37 RGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAGGSKSDR--LEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLL------------SQPRL-PEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVRE-GQYDPSNSYYNRDYLVLVEKPEA 828
            +G EMV  +VQSL SAL+YP+AGN  TN KLWD YA+EW   A WV +MA  ++     L+ VGDEW+ R    RV+ ++IL  VT E+   EIG GGGR+   V  +V  L C D+S  ML R   A+      G    ++ L+            + PR  P  ++   DFV  +DV+VH+D H   + +R +  +L  GG+AF+STAN  +P   G+ RF  Q KYSVGGF+F+ P+ VR++ +KAGL VVRE    D SN+YYNRDYL ++ + +A
Sbjct:   15 KGQEMVQQMVQSLSSALIYPEAGNVATNEKLWDVYASEWGKEAPWVVEMAATNRDGAVALDAVGDEWAPRAHTERVVDEWILSEVTPEARCCEIGSGGGRIAALVAPRVASLACCDVSAKMLARAEAALA----GGPAATSFHLVHGDAAPSDAGFGAGPRAYPPTMARGFDFVYCFDVMVHLDAHAMYRCLRRVESLLADGGRAFVSTANLKAP--DGFARFEKQSKYSVGGFFFVTPETVRVLADKAGLAVVRELDAPDASNTYYNRDYLAILARKDA 288          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A8J2SCW4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCW4_9STRA)

HSP 1 Score: 228 bits (580), Expect = 6.670e-68
Identity = 122/282 (43.26%), Postives = 171/282 (60.64%), Query Frame = 1
Query:    4 DCVDLMMEKSKRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAGGSKS--DRLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETC---------AGGGKVNYVLLSQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVRE-GQYDPSNSYYNRDYLVLV 813
            D  + + E + RG+EMV  +VQ L  AL+YPDAGN +TN KLWD YA+EW   A WV  MA  ++   + LE VGDEW+      RV+ ++IL  V+ +++  EIG GGGR+   V  +V +L CFD+S  ML   + A+  +           A G    +    +   P+    + DFV  +DV+VH+D H   + ++ I  +LK  GKAF+ST+N L+P   G+ RF AQ+KYSVGGFYF+ P+ VR ++ +AGLRVVRE    D SN+YYNRDYL L+
Sbjct:    4 DTEEYLREAAGRGHEMVQQMVQKLSGALIYPDAGNVQTNEKLWDVYASEWGAEAGWVAGMAASNREAKETLENVGDEWAPAAHTKRVVDEWILSEVSLKTHCCEIGSGGGRIGRMVAPRVSKLQCFDVSAKMLAAAKQALASQENVTFAQIHGDASGADAGFSDKPRHYAPQH-KHAYDFVYCFDVMVHMDAHAMFRCLKRIRALLKDEGKAFISTSNLLAP--DGFRRFEAQEKYSVGGFYFVTPETVRCLVSRAGLRVVRELSAPDASNTYYNRDYLALL 282          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A485L136_9STRA (Aste57867_14601 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L136_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.410e-67
Identity = 114/270 (42.22%), Postives = 168/270 (62.22%), Query Frame = 1
Query:   31 SKRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAGGSKSDRLEVVGDEWSSREEVLRVIGDFILPNVT--TESNVGEIGCGGGRVTTEVFRK--VGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLLSQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPSNSYYNRDYLVLVEKPEA 828
            +K   +++  ++ SL SA+V PD GN E NR++WD YA +W P A +V  M+    S  L+V+GDEWS+  ++  V+  F+ P ++  T+ +VGEIG GGGRV   V     V +  C DIS  ML+  R     +T A    ++Y LL Q   P+  +SSLDFVI++DV+VH+DLH   + ++++ R+L+PGG  F STAN  +P   GW RF  Q K+S+GGFYF CP ++  +L + G  +V+ G   P+N Y NRDYL++V+KP  
Sbjct:    2 AKARKDLILDVISSLSSAMVAPDIGNIEGNRRVWDAYAKDWSPTADFVTSMSP-QFSHPLDVLGDEWSTPADLTHVLSTFVFPYLSQSTQVHVGEIGSGGGRVARLVASHPAVSRYVCMDISSEMLEHAR-----KTLASVPHIDYCLLPQTS-PD--ASSLDFVIVFDVMVHMDLHTIYQTLQQVFRLLRPGGHCFFSTANLTAP--DGWARFQKQAKFSIGGFYFTCPQLIDFVLAQCGFEIVQRGAPSPTNMYLNRDYLLVVQKPHV 260          
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Match: A0A812TK35_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812TK35_9DINO)

HSP 1 Score: 218 bits (556), Expect = 1.540e-66
Identity = 117/274 (42.70%), Postives = 158/274 (57.66%), Query Frame = 1
Query:   16 LMMEKSKRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNASWVQKMAG--GSKSDRLEVVGDEWSSREEVLRVIGDFILPNVTTESN---VGEIGCGGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLL-SQPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLSTANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQYDPSNSYYNRDYLVLVEK 819
            L+ E   R N MV  L++ L    VY DA N ETNRKLWD YA  W  + +WVQ+M+G    ++  L+ VGDEWS  E +  V+ D++ P++  E     V E+G GGGR+   V  KV +L CFD+S+ ML R    + +    G   V + L+      PEE  +  DFV  +DV VH+DLH   + +  +  +L+PGG  F+S AN L+P   GW RF  Q KYSVGGFYF+ PD+VR +L  AG  +VR  +    N+Y NRD LVL  K
Sbjct:   38 LVAESEGRQNPMVLELLKDLQKCAVYTDAPNHETNRKLWDAYAQSWSSDVAWVQRMSGHVSREAAALKFVGDEWSDVESLDAVLSDWLYPHLEDEQKLKTVAEVGSGGGRIAARVAPKVERLVCFDVSEGMLARASSRIAE---LGHRHVEFQLVHGGAPYPEEYHTFFDFVYSFDVFVHMDLHQMRQTLHCVRAILRPGGLCFISFANLLAP--DGWQRFAKQQKYSVGGFYFVSPDIVRCLLTHAGFSLVRMSKPQAGNTYLNRDLLVLARK 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10324.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ6_ECTSI6.820e-17686.86Methyltransferase type 12 n=1 Tax=Ectocarpus silic... [more]
A0A7S2SUS9_9STRA1.630e-9150.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z8T5_9STRA1.390e-8045.55Methyltransferase type 12 n=1 Tax=Tribonema minus ... [more]
A0A7S2UUH0_9STRA7.710e-7946.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TSG7_9STRA1.270e-7143.34Deacetylase sulfotransferase n=2 Tax=Monodopsidace... [more]
A0A6A7GCB0_9CRUS1.670e-6842.11Methyltransferase type 12 (Fragment) n=1 Tax=Hiron... [more]
F0XX81_AURAN2.700e-6843.21Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SCW4_9STRA6.670e-6843.26Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A485L136_9STRA1.410e-6742.22Aste57867_14601 protein n=1 Tax=Aphanomyces stella... [more]
A0A812TK35_9DINO1.540e-6642.70Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10324contigP-canaliculata_contig10324:4054..7410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score483.0
Seed ortholog evalue9e-134
Seed eggNOG ortholog2880.D8LRQ6
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2CCND@1,2S208@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size837
Cds size819
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.0629685-CDS-P-canaliculata_contig10324:4053..40961622815604.0629685-CDS-P-canaliculata_contig10324:4053..4096Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 4054..4096 -
1693494161.4365501-CDS-P-canaliculata_contig10324:4053..40961693494161.4365501-CDS-P-canaliculata_contig10324:4053..4096Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 4054..4096 -
1622815604.0778027-CDS-P-canaliculata_contig10324:4587..46841622815604.0778027-CDS-P-canaliculata_contig10324:4587..4684Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 4588..4684 -
1693494161.448441-CDS-P-canaliculata_contig10324:4587..46841693494161.448441-CDS-P-canaliculata_contig10324:4587..4684Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 4588..4684 -
1622815604.088642-CDS-P-canaliculata_contig10324:5111..51651622815604.088642-CDS-P-canaliculata_contig10324:5111..5165Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 5112..5165 -
1693494161.4589124-CDS-P-canaliculata_contig10324:5111..51651693494161.4589124-CDS-P-canaliculata_contig10324:5111..5165Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 5112..5165 -
1622815604.0992901-CDS-P-canaliculata_contig10324:5397..55931622815604.0992901-CDS-P-canaliculata_contig10324:5397..5593Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 5398..5593 -
1693494161.4683776-CDS-P-canaliculata_contig10324:5397..55931693494161.4683776-CDS-P-canaliculata_contig10324:5397..5593Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 5398..5593 -
1622815604.1104271-CDS-P-canaliculata_contig10324:5978..60831622815604.1104271-CDS-P-canaliculata_contig10324:5978..6083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 5979..6083 -
1693494161.4784348-CDS-P-canaliculata_contig10324:5978..60831693494161.4784348-CDS-P-canaliculata_contig10324:5978..6083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 5979..6083 -
1622815604.1220174-CDS-P-canaliculata_contig10324:6419..64851622815604.1220174-CDS-P-canaliculata_contig10324:6419..6485Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 6420..6485 -
1693494161.4935796-CDS-P-canaliculata_contig10324:6419..64851693494161.4935796-CDS-P-canaliculata_contig10324:6419..6485Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 6420..6485 -
1622815604.1347725-CDS-P-canaliculata_contig10324:6895..70041622815604.1347725-CDS-P-canaliculata_contig10324:6895..7004Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 6896..7004 -
1693494161.5062761-CDS-P-canaliculata_contig10324:6895..70041693494161.5062761-CDS-P-canaliculata_contig10324:6895..7004Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 6896..7004 -
1622815604.145942-CDS-P-canaliculata_contig10324:7243..73921622815604.145942-CDS-P-canaliculata_contig10324:7243..7392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 7244..7392 -
1693494161.5157294-CDS-P-canaliculata_contig10324:7243..73921693494161.5157294-CDS-P-canaliculata_contig10324:7243..7392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10324 7244..7392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.157717-UTR-P-canaliculata_contig10324:7392..74101622815604.157717-UTR-P-canaliculata_contig10324:7392..7410Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10324 7393..7410 -
1693494161.5260086-UTR-P-canaliculata_contig10324:7392..74101693494161.5260086-UTR-P-canaliculata_contig10324:7392..7410Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10324 7393..7410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10324.464.1prot_P-canaliculata_contig10324.464.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10324 4054..7392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10324.464.1

>prot_P-canaliculata_contig10324.464.1 ID=prot_P-canaliculata_contig10324.464.1|Name=mRNA_P-canaliculata_contig10324.464.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=273bp
MMEKSKRGNEMVASLVQSLGSALVYPDAGNFETNRKLWDNYAAEWEPNAS
WVQKMAGGSKSDRLEVVGDEWSSREEVLRVIGDFILPNVTTESNVGEIGC
GGGRVTTEVFRKVGQLTCFDISKNMLKRTRDAVGDETCAGGGKVNYVLLS
QPRLPEELSSSLDFVILYDVLVHVDLHITNKYVREIARVLKPGGKAFLST
ANFLSPGESGWDRFIAQDKYSVGGFYFMCPDMVRLMLEKAGLRVVREGQY
DPSNSYYNRDYLVLVEKPEAIS*
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mRNA from alignment at P-canaliculata_contig10324:4054..7410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10324.464.1 ID=mRNA_P-canaliculata_contig10324.464.1|Name=mRNA_P-canaliculata_contig10324.464.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3357bp|location=Sequence derived from alignment at P-canaliculata_contig10324:4054..7410- (Pelvetia canaliculata dioecious)
CAGGATTGTGTCGACCTGATGATGGAGAAATCCAAGCGAGGCAACGAGAT GGTGGCCAGCCTCGTTCAGAGCCTCGGGTCGGCGCTCGTCTACCCCGACG CGGGGAACTTTGAGACGAACCGTAAGCTGTGGGACAACTACGCGGCGGAG TGGGAGCCAAACGCCAGGTGAGGAGGTGAAGAGGGTGAGGGCGTCACCCT TTACCTCCCTTTCACGCCTCCGTGGAGCGTCAGCGTTGTGCGGTGCGGTA TTGATTTGACCGGCCATGTTATAGTCGGTTATTCTTTGTACACATTTGTT GTCTCCGAGCATTCCGAGCATGCTCTGAACGCCATGTCACCGGGTTCTTT GTCTTTACGCTTGCTTCACACCCCCTTCCTGCTCTGGTGGGCGACGTTGA CCGCAGCTGGGTGCAAAAGATGGCCGGAGGTTCGAAGTCAGACCGCTTGG AAGTAGTGGGCGATGAGTGGTCCAGTCGGGAAGAAGTGCTGAGAGTCATC GGCGACTTTATCCTGGTAAGGCACGCGACGGTGACGTGCCGCACGTACGG CAGATACAGCATGTATAGCCGAAAGGTTCTGTATTCAAGCACATTTCAGG CAGCAGATTCCCCCAGCGGAGCATCTTCGGGTCGCCGAAATAAGTGTTCC GTGTGATTCCGTTGACAGAAACTTGGCGGAGTATTGGCATACCACAGCTC GCGAGGCGGCTCCTGCGCTACCACCACCATTGCCCCCTAAAAAAAAAAAA AAAGAGACTCTGCACCGGGAGCCTACCGTCACCGCGGTGTTGCTCGTTCT GCCTCCCGATTTGTTTTCTCCTTCGTGAGGCCTCTCCATCTCCATCTTTC TTGATCGTTCATACCAACGCCTTCAATGCCACTCTTCCATCCTACTCCGT TGTACGGCGCTGTATGGTGCTGCAGCCGAATGTGACCACGGAGAGCAACG TTGGGGAGATCGGCTGCGGGGGTGGACGCGTCACGACCGAGGTGCCCCCT GCGCCTCCGTGCTGTCTTTAATCGTGTGACTGAGCTGTTTGAGACTTGAT GTTGCCTGTTGTCGAAGACCTCTTTTACGTTCTCTATCTCGGGCGAGATT TAAAACCCGCCCCGCAGGAGTGCTTCCGCCTCTTGCCGCGACATCTCCGG GTGATTTACACAGCAGTGTGCGCTTCGCTCCGTCTTCTCTCTAGAAGGGA ATACAGCTGGAAATGCGTTTCTATTTCCGAGACCCCATTGTACTGTAGTA GATGTAAAATATCATGAAACGACGCGTTCGCGCTCGCCTCCCTACTACCA ACAGCCGTGTCTTTCATTTGGCGCCAGGTTTTCCGCAAAGTGGGTCAGCT GACGTGCTTTGACATCTCCAAGAATATGCTGAAGCGCACGAGGGATGCGG TCGGAGACGAGACGTGCGCTGGAGGGGGAAAAGTGTGAACACCCCGTTCG ACTCGATGCCCGTCATCTGCTCTTTTGTCCCCGTTGCGCCCGCAAGGCAT CGGAACCACACCAGCTGCGCAATCTGAGGAGCCCCGCCCCCATGCCGTTC CATGCCTCCTCTTACGTCTCTCTCGCGATGTCGTACGTTACATCATCTCG CGAACGGTGAACATCGAACAGCGAAAAGCGAGTAGCTCATCGTCTAATGT TTTAATAGGGGGCACGACTTTGAAACTACATTTGCACCACCAATACGCTC TCCAGACTGTTCCTTGTCTCCGATGGGAACGGCGGTAAAACGCGCACCAT CGCATCCATGCCCCGGTCGATCACATTGTGGCTCTGCCCTTTTTATGTCT ACTGCACCTCAGCGCAGGTCAATTATGTGCTGCTCAGCCAGCCCCGGTTG CCGGAGGAGTTGTCAAGCTCGCTCGACTTCGTCATCCTCTACGATGTATT AGTGCACGTGGATCTGCACATCACCAACAAATACGTGCGGGAGATCGCGA GGGTTCTCAAGCCGGGGGGCAAGGCGTTTTTATCCACAGCCAACTTCCTT AGCCCAGGCGAGAGTCTTATGATCGGCAGACCTCATGGTCGCAGAGTCTA CTGCGCGGTGGGATGCCCGAGCCCTTACCCCTTGAACTAACTCTTATTTT CCATACTTTCACATTATTTGGATCCCAATTACGAGCAAGGAGAGGCCGCT GGACGGTGACGGCTGTCACGGCATGACATGATCTTCTCTTCTCTTCTCTT CTCTTCTCTTCTCTTCTCTTCTCTTGCCCATCATTCCCACCCCAGGCGGA TGGGATCGCTTCATCGCGCAGGACAAGTATAGCGTCGGAGGGTTCTACTG TGAGTGTCTCGAACTTCCGATTGTTCCCCTCCACATACACACGAGGGTGT AACAAAGCACCTACTACGTTGATTGCATATTTTTGTACTTGATTTGAGAC GTGGCCACTACCGGGTGTCGTAAGCAGTAAGCGCTGGATAGGCTTGTACT CGGCAAGTTCGTTGTCCGCGCCAAACCAGCCCGATCCTAACATGGGGCGG CTTCTCTGCCTCGAGATGGATCTGAATTGTTGTCAGTTCGATTCCTGTCG TTTGGTGGAGCTGTCTTTGATCCATCAGCCCCTCGCTGCGTCCCAACTTG ACGAAAGTATTTCGGGTTTTTTTCTTTCTGGGGAATACAAGGCTCTCCCT TCTCGCAACTGCATGCTTTTTTGTTGTTTTTTTGTGCTTGTTCGTTTTTT CAACTTTTGTCTTTCGCACTTAAAAGTCATGTGCCCGGACATGGTGCGGC TGATGCTCGAAAAGGCGGGTCTGAGGGTAGTCAGAGAAGGGCAGTACGAT CCCTCCAATTCCTACTACAACAGGTGAGACATGGGTCTCCAGTTTTCTGC ACTCTCTCGACGGTGAGAATTGGTGAGCCCCTTCTCATGACTGCCAGTGC AGCACGAAATACGAACTAGTTCTGCAACAGCGTCTCCGTTACTGCACCTT GTGGCTGGCGTTAAGGGATTTTCGCTTTTCTAGGAAACTCAGTCCCGTCT AAGCTATATTTATAATTTATATTGCATTTCAACTGTTAACATCTACCGTA GATTAGAGAGGCGCAGCAAAAATGCCAACTCTGTTTATCTCGAGGAAACT TTGTTAAACCCTGTGCTATGTTTGCCCATCAACTGTGTGTACTGCGTTGT GCTGTAGAGGGGCATCGCACAAATGCCCACTTTGTTGTACTGTACTGTAC TGTAGCCTCGAGCCGCGGCGTCAAGTCGCGGCACGTTTCTTACCCCAAGT AATTCAAGTGCCAAGGGACCGACCGCACCGTTAAGCCGCGATGATTTCGA TGACGCATTCGCAGGGACTACTTGGTGCTCGTGGAGAAGCCGGAAGCAAT ATCATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10324:4054..7410-

>mRNA_P-canaliculata_contig10324.464.1 ID=mRNA_P-canaliculata_contig10324.464.1|Name=mRNA_P-canaliculata_contig10324.464.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at P-canaliculata_contig10324:4054..7410- (Pelvetia canaliculata dioecious)
ATGATGGAGAAATCCAAGCGAGGCAACGAGATGGTGGCCAGCCTCGTTCA
GAGCCTCGGGTCGGCGCTCGTCTACCCCGACGCGGGGAACTTTGAGACGA
ACCGTAAGCTGTGGGACAACTACGCGGCGGAGTGGGAGCCAAACGCCAGA
TGATGGAGAAATCCAAGCGAGGCAACGAGATGGTGGCCAGCCTCGTTCAG
AGCCTCGGGTCGGCGCTCGTCTACCCCGACGCGGGGAACTTTGAGACGAA
CCGTAAGCTGTGGGACAACTACGCGGCGGAGTGGGAGCCAAACGCCAGCT
GGGTGCAAAAGATGGCCGGAGGTTCGAAGTCAGACCGCTTGGAAGTAGTG
GGCGATGAGTGGTCCAGTCGGGAAGAAGTGCTGAGAGTCATCGGCGACTT
TATCCTGCTGGGTGCAAAAGATGGCCGGAGGTTCGAAGTCAGACCGCTTG
GAAGTAGTGGGCGATGAGTGGTCCAGTCGGGAAGAAGTGCTGAGAGTCAT
CGGCGACTTTATCCTGCCGAATGTGACCACGGAGAGCAACGTTGGGGAGA
TCGGCTGCGGGGGTGGACGCGTCACGACCGAGCCGAATGTGACCACGGAG
AGCAACGTTGGGGAGATCGGCTGCGGGGGTGGACGCGTCACGACCGAGGT
TTTCCGCAAAGTGGGTCAGCTGACGTGCTTTGACATCTCCAAGAATATGC
TGAAGCGCACGAGGGATGCGGTCGGAGACGAGACGTGCGCTGGAGGGGGA
AAAGTTTTCCGCAAAGTGGGTCAGCTGACGTGCTTTGACATCTCCAAGAA
TATGCTGAAGCGCACGAGGGATGCGGTCGGAGACGAGACGTGCGCTGGAG
GGGGAAAAGTCAATTATGTGCTGCTCAGCCAGCCCCGGTTGCCGGAGGAG
TTGTCAAGCTCGCTCGACTTCGTCATCCTCTACGATGTATTAGTGCACGT
GGATCTGCACATCACCAACAAATACGTGCGGGAGATCGCGAGGGTTCTCA
AGCCGGGGGGCAAGGCGTTTTTATCCACAGCCAACTTCCTTAGCCCAGGC
GAGAGTCAATTATGTGCTGCTCAGCCAGCCCCGGTTGCCGGAGGAGTTGT
CAAGCTCGCTCGACTTCGTCATCCTCTACGATGTATTAGTGCACGTGGAT
CTGCACATCACCAACAAATACGTGCGGGAGATCGCGAGGGTTCTCAAGCC
GGGGGGCAAGGCGTTTTTATCCACAGCCAACTTCCTTAGCCCAGGCGAGA
GCGGATGGGATCGCTTCATCGCGCAGGACAAGTATAGCGTCGGAGGGTTC
TACTGCGGATGGGATCGCTTCATCGCGCAGGACAAGTATAGCGTCGGAGG
GTTCTACTTCATGTGCCCGGACATGGTGCGGCTGATGCTCGAAAAGGCGG
GTCTGAGGGTAGTCAGAGAAGGGCAGTACGATCCCTCCAATTCCTACTAC
AACAGTCATGTGCCCGGACATGGTGCGGCTGATGCTCGAAAAGGCGGGTC
TGAGGGTAGTCAGAGAAGGGCAGTACGATCCCTCCAATTCCTACTACAAC
AGGGACTACTTGGTGCTCGTGGAGAAGCCGGAAGCAATATCATAAGGACT
ACTTGGTGCTCGTGGAGAAGCCGGAAGCAATATCATAA
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