mRNA_P-canaliculata_contig103188.462.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103188.462.1
Unique NamemRNA_P-canaliculata_contig103188.462.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103188.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103188contigP-canaliculata_contig103188:6..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size882
Cds size855
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.8697255-UTR-P-canaliculata_contig103188:5..321622815603.8697255-UTR-P-canaliculata_contig103188:5..32Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103188 6..32 +
1693494161.3055978-UTR-P-canaliculata_contig103188:5..321693494161.3055978-UTR-P-canaliculata_contig103188:5..32Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103188 6..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.883306-CDS-P-canaliculata_contig103188:32..8871622815603.883306-CDS-P-canaliculata_contig103188:32..887Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103188 33..887 +
1693494161.3145583-CDS-P-canaliculata_contig103188:32..8871693494161.3145583-CDS-P-canaliculata_contig103188:32..887Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103188 33..887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103188.462.1prot_P-canaliculata_contig103188.462.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103188 33..887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103188.462.1

>prot_P-canaliculata_contig103188.462.1 ID=prot_P-canaliculata_contig103188.462.1|Name=mRNA_P-canaliculata_contig103188.462.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=285bp
MMVDEIESLEFPTIMIGSRLDDPEGFRELLDLARSIVEQGIENLPPDMEF
LRRFWKVADEEDHYLLMAEIEMSKMPWDMITDEMELDDQTQEYFDAIRGA
INEKTAVVTLGVIDNMLVVGVARNRERLISFGGEGKLVDLKAMKPLRKAI
DENQKLISVFYMSEQYAEASYSFQNSWDQIKPLIGPMIYEIDEVPEEDKE
ALADRIESDANELIDDFTPLFPTMGMTLGISSMHSDGIHSYARTDTKHPL
LDGSKPLNLPSELGPETVLFVGQRLNRMADQYDLI
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mRNA from alignment at P-canaliculata_contig103188:6..887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103188.462.1 ID=mRNA_P-canaliculata_contig103188.462.1|Name=mRNA_P-canaliculata_contig103188.462.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at P-canaliculata_contig103188:6..887+ (Pelvetia canaliculata dioecious)
GAGGAACAGGTGGACGAATTAGTCGAAATGATGGTCGACGAAATAGAATC
GCTTGAATTCCCAACAATTATGATCGGTTCACGCCTTGATGATCCAGAAG
GGTTCCGCGAGCTGTTGGATCTCGCTCGATCCATTGTCGAACAAGGGATC
GAGAACTTGCCACCGGACATGGAATTTCTCCGCCGGTTCTGGAAAGTCGC
TGACGAAGAAGATCACTACCTGTTGATGGCTGAAATCGAGATGTCCAAAA
TGCCATGGGACATGATTACCGACGAGATGGAGTTGGACGATCAGACTCAA
GAATACTTCGATGCTATCCGCGGAGCTATAAACGAAAAAACAGCCGTTGT
CACTCTGGGAGTCATCGACAACATGCTGGTCGTGGGAGTCGCTCGTAATC
GTGAACGACTGATCAGTTTTGGCGGGGAAGGAAAACTGGTCGATCTTAAG
GCCATGAAACCTCTTCGCAAAGCGATCGACGAAAATCAAAAACTGATCAG
CGTGTTCTACATGAGCGAGCAATACGCGGAAGCTTCTTACTCGTTCCAAA
ATTCATGGGATCAGATAAAGCCGTTGATTGGGCCGATGATTTACGAAATA
GATGAGGTTCCCGAGGAGGACAAAGAAGCGCTCGCGGATCGCATTGAATC
AGACGCCAACGAACTGATCGACGATTTTACACCGCTATTTCCGACCATGG
GAATGACGTTAGGAATATCGTCGATGCACAGCGACGGCATACATAGCTAC
GCTCGCACCGATACCAAACACCCGCTGCTGGACGGTTCCAAGCCGCTTAA
CCTGCCTTCTGAGCTGGGCCCTGAAACGGTCTTATTTGTCGGCCAACGGC
TCAATCGAATGGCGGATCAGTACGACCTGATT
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Coding sequence (CDS) from alignment at P-canaliculata_contig103188:6..887+

>mRNA_P-canaliculata_contig103188.462.1 ID=mRNA_P-canaliculata_contig103188.462.1|Name=mRNA_P-canaliculata_contig103188.462.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at P-canaliculata_contig103188:6..887+ (Pelvetia canaliculata dioecious)
ATGATGGTCGACGAAATAGAATCGCTTGAATTCCCAACAATTATGATCGG
TTCACGCCTTGATGATCCAGAAGGGTTCCGCGAGCTGTTGGATCTCGCTC
GATCCATTGTCGAACAAGGGATCGAGAACTTGCCACCGGACATGGAATTT
CTCCGCCGGTTCTGGAAAGTCGCTGACGAAGAAGATCACTACCTGTTGAT
GGCTGAAATCGAGATGTCCAAAATGCCATGGGACATGATTACCGACGAGA
TGGAGTTGGACGATCAGACTCAAGAATACTTCGATGCTATCCGCGGAGCT
ATAAACGAAAAAACAGCCGTTGTCACTCTGGGAGTCATCGACAACATGCT
GGTCGTGGGAGTCGCTCGTAATCGTGAACGACTGATCAGTTTTGGCGGGG
AAGGAAAACTGGTCGATCTTAAGGCCATGAAACCTCTTCGCAAAGCGATC
GACGAAAATCAAAAACTGATCAGCGTGTTCTACATGAGCGAGCAATACGC
GGAAGCTTCTTACTCGTTCCAAAATTCATGGGATCAGATAAAGCCGTTGA
TTGGGCCGATGATTTACGAAATAGATGAGGTTCCCGAGGAGGACAAAGAA
GCGCTCGCGGATCGCATTGAATCAGACGCCAACGAACTGATCGACGATTT
TACACCGCTATTTCCGACCATGGGAATGACGTTAGGAATATCGTCGATGC
ACAGCGACGGCATACATAGCTACGCTCGCACCGATACCAAACACCCGCTG
CTGGACGGTTCCAAGCCGCTTAACCTGCCTTCTGAGCTGGGCCCTGAAAC
GGTCTTATTTGTCGGCCAACGGCTCAATCGAATGGCGGATCAGTACGACC
TGATTATGATGGTCGACGAAATAGAATCGCTTGAATTCCCAACAATTATG
ATCGGTTCACGCCTTGATGATCCAGAAGGGTTCCGCGAGCTGTTGGATCT
CGCTCGATCCATTGTCGAACAAGGGATCGAGAACTTGCCACCGGACATGG
AATTTCTCCGCCGGTTCTGGAAAGTCGCTGACGAAGAAGATCACTACCTG
TTGATGGCTGAAATCGAGATGTCCAAAATGCCATGGGACATGATTACCGA
CGAGATGGAGTTGGACGATCAGACTCAAGAATACTTCGATGCTATCCGCG
GAGCTATAAACGAAAAAACAGCCGTTGTCACTCTGGGAGTCATCGACAAC
ATGCTGGTCGTGGGAGTCGCTCGTAATCGTGAACGACTGATCAGTTTTGG
CGGGGAAGGAAAACTGGTCGATCTTAAGGCCATGAAACCTCTTCGCAAAG
CGATCGACGAAAATCAAAAACTGATCAGCGTGTTCTACATGAGCGAGCAA
TACGCGGAAGCTTCTTACTCGTTCCAAAATTCATGGGATCAGATAAAGCC
GTTGATTGGGCCGATGATTTACGAAATAGATGAGGTTCCCGAGGAGGACA
AAGAAGCGCTCGCGGATCGCATTGAATCAGACGCCAACGAACTGATCGAC
GATTTTACACCGCTATTTCCGACCATGGGAATGACGTTAGGAATATCGTC
GATGCACAGCGACGGCATACATAGCTACGCTCGCACCGATACCAAACACC
CGCTGCTGGACGGTTCCAAGCCGCTTAACCTGCCTTCTGAGCTGGGCCCT
GAAACGGTCTTATTTGTCGGCCAACGGCTCAATCGAATGGCGGATCAGTA
CGACCTGATT
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