mRNA_P-canaliculata_contig103180.461.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103180.461.1
Unique NamemRNA_P-canaliculata_contig103180.461.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103180.461.1 vs. uniprot
Match: A0A7Y2DPV2_9ACTN (Phosphotransferase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DPV2_9ACTN)

HSP 1 Score: 58.9 bits (141), Expect = 3.410e-6
Identity = 54/201 (26.87%), Postives = 76/201 (37.81%), Query Frame = 1 
Query:  199 IVLTSGHDAGSRTVVLPFEHGAEEPACAIKVAGQATVNDLTRGEHVLLRELHDRLPTSVSATLPVPLGAFDWHGRAGSAESILAGPTLTVVLGEERSEPRKI--EHLDRVARWTTALAAASGEMIAWDDSAHQRWIESIVSKARVGLNDPDRFTPLFDGLVAASARLVGTSLPTVRRHFDLGPWNILSTPDGVGVIDWESG 795
            + + +G    +R  VL       E A   KV       DL R E  +L  L   LP+ + +  P PL   D  G   +  S  A          E   PR +  E +D +AR          E+ AW            +    +G    +  + L + +    AR     +     H DL PWN++S P GVGVIDWE G
Sbjct:  114 VSIGAGPPRRNRKPVLMLIRADGEVAGFAKVGWSPFTEDLVRNEFHILTRLDGNLPSPILS--PAPLELIDLDGVVVAVTSAFAST--------EWKGPRALLPEQIDGIARSVGNREVPVAEL-AW------------LRTPDIGERTDEAQSRLAEAVALVRARFSDEVVEVGIWHGDLNPWNLVSGPSGVGVIDWEFG 291
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103180.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y2DPV2_9ACTN3.410e-626.87Phosphotransferase n=1 Tax=Acidimicrobiales bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103180contigP-canaliculata_contig103180:1..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size912
Cds size912
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.8267922-CDS-P-canaliculata_contig103180:0..9121622815603.8267922-CDS-P-canaliculata_contig103180:0..912Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103180 1..912 +
1693494161.2968843-CDS-P-canaliculata_contig103180:0..9121693494161.2968843-CDS-P-canaliculata_contig103180:0..912Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103180 1..912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103180.461.1prot_P-canaliculata_contig103180.461.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103180 1..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103180.461.1

>prot_P-canaliculata_contig103180.461.1 ID=prot_P-canaliculata_contig103180.461.1|Name=mRNA_P-canaliculata_contig103180.461.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=304bp
MRWYLRHLFVADRTATRLASRSLELFARWAGWFASDLIVVFTGSASAVEA
VELPPPRGAALCGADCIVLTSGHDAGSRTVVLPFEHGAEEPACAIKVAGQ
ATVNDLTRGEHVLLRELHDRLPTSVSATLPVPLGAFDWHGRAGSAESILA
GPTLTVVLGEERSEPRKIEHLDRVARWTTALAAASGEMIAWDDSAHQRWI
ESIVSKARVGLNDPDRFTPLFDGLVAASARLVGTSLPTVRRHFDLGPWNI
LSTPDGVGVIDWESGLRWSEDGRGLPLCDLDYFAKYWLHAATGARDLGDE
LRLF
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mRNA from alignment at P-canaliculata_contig103180:1..912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103180.461.1 ID=mRNA_P-canaliculata_contig103180.461.1|Name=mRNA_P-canaliculata_contig103180.461.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig103180:1..912+ (Pelvetia canaliculata dioecious)
ATGAGGTGGTATCTCCGGCATCTCTTCGTCGCTGACCGAACGGCCACGAG
GCTTGCGTCCCGGTCACTCGAACTGTTCGCCCGCTGGGCCGGTTGGTTCG
CGTCCGACCTGATCGTGGTGTTCACCGGATCGGCGAGTGCCGTCGAGGCC
GTTGAATTGCCGCCACCCCGAGGTGCCGCACTGTGCGGAGCCGACTGCAT
CGTGTTGACCAGCGGGCATGACGCAGGAAGCCGCACGGTCGTGCTCCCGT
TCGAACACGGGGCCGAGGAGCCTGCATGCGCGATCAAGGTCGCCGGTCAG
GCGACCGTCAACGATCTGACGCGCGGCGAACACGTCCTGCTGCGTGAACT
GCACGACCGTCTGCCGACGTCGGTGTCGGCCACGCTGCCGGTTCCACTGG
GTGCCTTCGACTGGCACGGCCGGGCGGGATCGGCGGAGAGCATCCTCGCA
GGACCGACGCTGACGGTGGTGCTCGGCGAGGAACGCAGCGAACCGCGCAA
GATCGAACACCTCGACCGAGTCGCCCGATGGACGACGGCGCTTGCAGCGG
CGTCCGGAGAGATGATCGCCTGGGATGATTCCGCTCACCAGCGATGGATC
GAGTCGATCGTGTCGAAGGCTCGTGTCGGTCTGAACGATCCGGACCGTTT
CACCCCGTTGTTCGACGGTCTGGTCGCAGCGAGCGCTCGGCTCGTCGGCA
CGTCGTTGCCGACGGTTCGCCGACACTTCGATCTCGGCCCGTGGAACATC
TTGAGCACACCCGATGGAGTGGGGGTGATCGATTGGGAGTCGGGACTGCG
ATGGAGTGAGGACGGTCGAGGGCTGCCGTTGTGTGATCTCGACTACTTCG
CCAAGTACTGGTTGCACGCAGCGACCGGCGCCCGCGACCTCGGCGACGAG
CTCAGACTGTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig103180:1..912+

>mRNA_P-canaliculata_contig103180.461.1 ID=mRNA_P-canaliculata_contig103180.461.1|Name=mRNA_P-canaliculata_contig103180.461.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at P-canaliculata_contig103180:1..912+ (Pelvetia canaliculata dioecious)
ATGAGGTGGTATCTCCGGCATCTCTTCGTCGCTGACCGAACGGCCACGAG
GCTTGCGTCCCGGTCACTCGAACTGTTCGCCCGCTGGGCCGGTTGGTTCG
CGTCCGACCTGATCGTGGTGTTCACCGGATCGGCGAGTGCCGTCGAGGCC
GTTGAATTGCCGCCACCCCGAGGTGCCGCACTGTGCGGAGCCGACTGCAT
CGTGTTGACCAGCGGGCATGACGCAGGAAGCCGCACGGTCGTGCTCCCGT
TCGAACACGGGGCCGAGGAGCCTGCATGCGCGATCAAGGTCGCCGGTCAG
GCGACCGTCAACGATCTGACGCGCGGCGAACACGTCCTGCTGCGTGAACT
GCACGACCGTCTGCCGACGTCGGTGTCGGCCACGCTGCCGGTTCCACTGG
GTGCCTTCGACTGGCACGGCCGGGCGGGATCGGCGGAGAGCATCCTCGCA
GGACCGACGCTGACGGTGGTGCTCGGCGAGGAACGCAGCGAACCGCGCAA
GATCGAACACCTCGACCGAGTCGCCCGATGGACGACGGCGCTTGCAGCGG
CGTCCGGAGAGATGATCGCCTGGGATGATTCCGCTCACCAGCGATGGATC
GAGTCGATCGTGTCGAAGGCTCGTGTCGGTCTGAACGATCCGGACCGTTT
CACCCCGTTGTTCGACGGTCTGGTCGCAGCGAGCGCTCGGCTCGTCGGCA
CGTCGTTGCCGACGGTTCGCCGACACTTCGATCTCGGCCCGTGGAACATC
TTGAGCACACCCGATGGAGTGGGGGTGATCGATTGGGAGTCGGGACTGCG
ATGGAGTGAGGACGGTCGAGGGCTGCCGTTGTGTGATCTCGACTACTTCG
CCAAGTACTGGTTGCACGCAGCGACCGGCGCCCGCGACCTCGGCGACGAG
CTCAGACTGTTCATGAGGTGGTATCTCCGGCATCTCTTCGTCGCTGACCG
AACGGCCACGAGGCTTGCGTCCCGGTCACTCGAACTGTTCGCCCGCTGGG
CCGGTTGGTTCGCGTCCGACCTGATCGTGGTGTTCACCGGATCGGCGAGT
GCCGTCGAGGCCGTTGAATTGCCGCCACCCCGAGGTGCCGCACTGTGCGG
AGCCGACTGCATCGTGTTGACCAGCGGGCATGACGCAGGAAGCCGCACGG
TCGTGCTCCCGTTCGAACACGGGGCCGAGGAGCCTGCATGCGCGATCAAG
GTCGCCGGTCAGGCGACCGTCAACGATCTGACGCGCGGCGAACACGTCCT
GCTGCGTGAACTGCACGACCGTCTGCCGACGTCGGTGTCGGCCACGCTGC
CGGTTCCACTGGGTGCCTTCGACTGGCACGGCCGGGCGGGATCGGCGGAG
AGCATCCTCGCAGGACCGACGCTGACGGTGGTGCTCGGCGAGGAACGCAG
CGAACCGCGCAAGATCGAACACCTCGACCGAGTCGCCCGATGGACGACGG
CGCTTGCAGCGGCGTCCGGAGAGATGATCGCCTGGGATGATTCCGCTCAC
CAGCGATGGATCGAGTCGATCGTGTCGAAGGCTCGTGTCGGTCTGAACGA
TCCGGACCGTTTCACCCCGTTGTTCGACGGTCTGGTCGCAGCGAGCGCTC
GGCTCGTCGGCACGTCGTTGCCGACGGTTCGCCGACACTTCGATCTCGGC
CCGTGGAACATCTTGAGCACACCCGATGGAGTGGGGGTGATCGATTGGGA
GTCGGGACTGCGATGGAGTGAGGACGGTCGAGGGCTGCCGTTGTGTGATC
TCGACTACTTCGCCAAGTACTGGTTGCACGCAGCGACCGGCGCCCGCGAC
CTCGGCGACGAGCTCAGACTGTTC
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