mRNA_P-canaliculata_contig103106.458.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103106.458.1
Unique NamemRNA_P-canaliculata_contig103106.458.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A2H4FH69_9FLOR (Photosystem II reaction center Psb28 protein n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FH69_9FLOR)

HSP 1 Score: 216 bits (550), Expect = 5.400e-71
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
            MA+IQFIQGINETIIP IK+TRS+DGSTGTATFRFNDPDILKSDMQEKG+ITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIY+IKSP+DWDRFMRFMERYAKDN+LSFTK +
Sbjct:    1 MANIQFIQGINETIIPDIKLTRSRDGSTGTATFRFNDPDILKSDMQEKGNITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYIIKSPQDWDRFMRFMERYAKDNQLSFTKVS 114          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A4D6WXB0_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Hypnea pannosa TaxID=105607 RepID=A0A4D6WXB0_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 4.450e-70
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
            MA+IQFIQGINETIIP IK+TRSKDGSTGTATFRFN PDILKSDMQEKGDITGMYLNDEEGSMVTK+VNAKFINGKPQAIES+YVIKSPKDWDRFMRFMERYA D+ LSFTKA
Sbjct:    1 MANIQFIQGINETIIPDIKLTRSKDGSTGTATFRFNQPDILKSDMQEKGDITGMYLNDEEGSMVTKDVNAKFINGKPQAIESVYVIKSPKDWDRFMRFMERYANDHNLSFTKA 113          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A4D6WUM2_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Dicranema revolutum TaxID=239144 RepID=A0A4D6WUM2_9FLOR)

HSP 1 Score: 209 bits (532), Expect = 3.010e-68
Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
            MA+IQFI+GINE  IP IK+TRS+DGSTGTATFRF++PDILKSDMQEKG+ITGMYLNDEEGSMVTKEVNAKFINGKP AIESIY+IKSPKDWDRFMRFMERYA DNELSFTKAN
Sbjct:    1 MATIQFIKGINENTIPDIKLTRSRDGSTGTATFRFSEPDILKSDMQEKGEITGMYLNDEEGSMVTKEVNAKFINGKPLAIESIYIIKSPKDWDRFMRFMERYANDNELSFTKAN 114          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A6H1U8S6_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Caulacanthus okamurae TaxID=152008 RepID=A0A6H1U8S6_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 9.510e-68
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
            MA+IQFIQGINET++  +K+TRSKDGS GTATFRFN+PDILKSDMQ+KGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIE+ Y+IKSPKDWDRFMRFMERY  +NELSFTKAN
Sbjct:    4 MANIQFIQGINETVVADVKLTRSKDGSNGTATFRFNNPDILKSDMQDKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIEATYIIKSPKDWDRFMRFMERYGNENELSFTKAN 117          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A342RZC4_9FLOR (Photosystem II reaction center Psb28 protein n=3 Tax=Gigartinales TaxID=28017 RepID=A0A342RZC4_9FLOR)

HSP 1 Score: 204 bits (520), Expect = 2.100e-66
Identity = 95/113 (84.07%), Postives = 107/113 (94.69%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
            MA+IQFI+GINET++P +K+TRS+DGS GTATFRFNDPDILKS+MQEKGDITGMYL DEEG M+TK+VNAKFING+PQAIESIY+IKSPKDWDRFMRFMERYA DNEL FTKA
Sbjct:    1 MATIQFIKGINETVVPDVKLTRSRDGSNGTATFRFNDPDILKSNMQEKGDITGMYLGDEEGEMITKDVNAKFINGRPQAIESIYIIKSPKDWDRFMRFMERYANDNELLFTKA 113          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A141SDP3_GELEL (Photosystem II reaction center Psb28 protein n=1 Tax=Gelidium elegans TaxID=37200 RepID=A0A141SDP3_GELEL)

HSP 1 Score: 199 bits (506), Expect = 2.870e-64
Identity = 93/113 (82.30%), Postives = 105/113 (92.92%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
            MA IQFIQGINET++P +K+TRSKDGSTGTATFRFN PDILK+ M++KGDITGMYL DEEG M+TK+VNAKFINGKP+AIESIY+IKSP DWDRFMRFMERYA DN+LSFTKA
Sbjct:    1 MAFIQFIQGINETVVPDVKLTRSKDGSTGTATFRFNQPDILKAGMKDKGDITGMYLKDEEGEMITKDVNAKFINGKPKAIESIYIIKSPLDWDRFMRFMERYANDNQLSFTKA 113          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A6M3WWC8_PTELU (Photosystem II reaction center Psb28 protein n=1 Tax=Pterocladia lucida TaxID=31408 RepID=A0A6M3WWC8_PTELU)

HSP 1 Score: 198 bits (503), Expect = 8.230e-64
Identity = 90/113 (79.65%), Postives = 107/113 (94.69%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
            MA IQFIQGINET+IP +K+TRS+DGSTGTATFRFN+PDIL+ DM++KGDITGMYL D+EG M+TK+VNAKFINGKP+AIE+IY+IKSP+DWDRFMRFM++YA DNELSFTKA
Sbjct:    1 MALIQFIQGINETVIPDVKLTRSRDGSTGTATFRFNNPDILRPDMEDKGDITGMYLKDDEGDMITKDVNAKFINGKPEAIEAIYIIKSPRDWDRFMRFMDKYADDNELSFTKA 113          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A3G3MG37_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Lithothamnion sp. TaxID=1940749 RepID=A0A3G3MG37_9FLOR)

HSP 1 Score: 196 bits (499), Expect = 3.350e-63
Identity = 91/114 (79.82%), Postives = 106/114 (92.98%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
            MA+IQFI+GINE +IPYI++TRS+DGSTGTATFRFN PDIL S MQ KGDITGMYL DEEG +VT++VNAKFINGKP+AIESIY+IKSP+DWDRFMRFMERY++DN LSFTKA+
Sbjct:    1 MANIQFIRGINENVIPYIQLTRSRDGSTGTATFRFNSPDILTSAMQNKGDITGMYLRDEEGELVTRDVNAKFINGKPRAIESIYIIKSPEDWDRFMRFMERYSRDNNLSFTKAS 114          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A1C9CB89_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Ahnfeltia plicata TaxID=28023 RepID=A0A1C9CB89_9FLOR)

HSP 1 Score: 196 bits (498), Expect = 4.610e-63
Identity = 92/113 (81.42%), Postives = 103/113 (91.15%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
            MA IQFIQGINETI+P +K+TRS+DGSTGTATFRFN+PDIL S M+ KGDITGMYL DEEG +VT++VNAKFINGKPQAIES+Y+IKSP DWDRFMRFMERYA DN LSFTKA
Sbjct:    1 MAVIQFIQGINETIVPDVKLTRSRDGSTGTATFRFNNPDILMSKMESKGDITGMYLKDEEGELVTRDVNAKFINGKPQAIESVYIIKSPDDWDRFMRFMERYANDNNLSFTKA 113          
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A3G3MFS6_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Synarthrophyton chejuense TaxID=2485825 RepID=A0A3G3MFS6_9FLOR)

HSP 1 Score: 195 bits (496), Expect = 9.610e-63
Identity = 89/114 (78.07%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
            MA+IQFI+GI+E ++PYI++TRS+DGSTGTATFRFN PDIL S+MQ+KGDITGMYL DEEG +VT++VNAKFING+P+AIESIY+IKSPKDWDRFMRFMERY+ DN LSFTKA+
Sbjct:    1 MANIQFIKGIDENVVPYIQLTRSRDGSTGTATFRFNSPDILTSEMQDKGDITGMYLKDEEGEIVTRDVNAKFINGQPKAIESIYIIKSPKDWDRFMRFMERYSNDNNLSFTKAS 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H4FH69_9FLOR5.400e-7191.23Photosystem II reaction center Psb28 protein n=4 T... [more]
A0A4D6WXB0_9FLOR4.450e-7092.04Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A4D6WUM2_9FLOR3.010e-6888.60Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A6H1U8S6_9FLOR9.510e-6885.96Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A342RZC4_9FLOR2.100e-6684.07Photosystem II reaction center Psb28 protein n=3 T... [more]
A0A141SDP3_GELEL2.870e-6482.30Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A6M3WWC8_PTELU8.230e-6479.65Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A3G3MG37_9FLOR3.350e-6379.82Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A1C9CB89_9FLOR4.610e-6381.42Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A3G3MFS6_9FLOR9.610e-6378.07Photosystem II reaction center Psb28 protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103106contigP-canaliculata_contig103106:209..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.9e-40
Seed eggNOG ortholog55529.AAC35603
Preferred namepsbW
KEGG koko:K08903
KEGG Pathwayko00195,ko01100,map00195,map01100
EggNOG free text desc.photosynthesis
EggNOG OGs2AR4E@1,2RMFI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.597564-CDS-P-canaliculata_contig103106:208..5531622815603.597564-CDS-P-canaliculata_contig103106:208..553Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103106 209..553 +
1693494161.1989741-CDS-P-canaliculata_contig103106:208..5531693494161.1989741-CDS-P-canaliculata_contig103106:208..553Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103106 209..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103106.458.1prot_P-canaliculata_contig103106.458.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103106 209..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103106.458.1

>prot_P-canaliculata_contig103106.458.1 ID=prot_P-canaliculata_contig103106.458.1|Name=mRNA_P-canaliculata_contig103106.458.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=115bp
MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGD
ITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFME
RYAKDNELSFTKAN*
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mRNA from alignment at P-canaliculata_contig103106:209..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103106.458.1 ID=mRNA_P-canaliculata_contig103106.458.1|Name=mRNA_P-canaliculata_contig103106.458.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at P-canaliculata_contig103106:209..553+ (Pelvetia canaliculata dioecious)
ATGGCCAGTATTCAATTTATACAAGGAATTAATGAAACAATTATTCCTTA TATCAAAATAACAAGATCAAAAGACGGAAGTACTGGAACAGCTACATTTC GATTTAATGATCCAGATATTTTAAAATCTGATATGCAAGAAAAAGGCGAT ATTACAGGGATGTATTTAAATGACGAAGAAGGCTCAATGGTTACAAAAGA AGTAAATGCTAAATTTATTAATGGTAAACCACAAGCGATTGAATCAATTT ACGTTATAAAAAGCCCAAAAGATTGGGATAGATTTATGCGCTTTATGGAA AGATATGCCAAAGATAATGAACTATCTTTTACAAAAGCAAACTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103106:209..553+

>mRNA_P-canaliculata_contig103106.458.1 ID=mRNA_P-canaliculata_contig103106.458.1|Name=mRNA_P-canaliculata_contig103106.458.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at P-canaliculata_contig103106:209..553+ (Pelvetia canaliculata dioecious)
ATGGCCAGTATTCAATTTATACAAGGAATTAATGAAACAATTATTCCTTA
TATCAAAATAACAAGATCAAAAGACGGAAGTACTGGAACAGCTACATTTC
GATTTAATGATCCAGATATTTTAAAATCTGATATGCAAGAAAAAGGCGAT
ATTACAGGGATGTATTTAAATGACGAAGAAGGCTCAATGGTTACAAAAGA
AGTAAATGCTAAATTTATTAATGGTAAACCACAAGCGATTGAATCAATTT
ACGTTATAAAAAGCCCAAAAGATTGGGATAGATTTATGCGCTTTATGGAA
AGATATGCCAAAGATAATGAACTATCTTTTACAAAAGCAAACTAAATGGC
CAGTATTCAATTTATACAAGGAATTAATGAAACAATTATTCCTTATATCA
AAATAACAAGATCAAAAGACGGAAGTACTGGAACAGCTACATTTCGATTT
AATGATCCAGATATTTTAAAATCTGATATGCAAGAAAAAGGCGATATTAC
AGGGATGTATTTAAATGACGAAGAAGGCTCAATGGTTACAAAAGAAGTAA
ATGCTAAATTTATTAATGGTAAACCACAAGCGATTGAATCAATTTACGTT
ATAAAAAGCCCAAAAGATTGGGATAGATTTATGCGCTTTATGGAAAGATA
TGCCAAAGATAATGAACTATCTTTTACAAAAGCAAACTAA
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