mRNA_P-canaliculata_contig103106.458.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A2H4FH69_9FLOR (Photosystem II reaction center Psb28 protein n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FH69_9FLOR) HSP 1 Score: 216 bits (550), Expect = 5.400e-71 Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
MA+IQFIQGINETIIP IK+TRS+DGSTGTATFRFNDPDILKSDMQEKG+ITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIY+IKSP+DWDRFMRFMERYAKDN+LSFTK +
Sbjct: 1 MANIQFIQGINETIIPDIKLTRSRDGSTGTATFRFNDPDILKSDMQEKGNITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYIIKSPQDWDRFMRFMERYAKDNQLSFTKVS 114
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A4D6WXB0_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Hypnea pannosa TaxID=105607 RepID=A0A4D6WXB0_9FLOR) HSP 1 Score: 214 bits (544), Expect = 4.450e-70 Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
MA+IQFIQGINETIIP IK+TRSKDGSTGTATFRFN PDILKSDMQEKGDITGMYLNDEEGSMVTK+VNAKFINGKPQAIES+YVIKSPKDWDRFMRFMERYA D+ LSFTKA
Sbjct: 1 MANIQFIQGINETIIPDIKLTRSKDGSTGTATFRFNQPDILKSDMQEKGDITGMYLNDEEGSMVTKDVNAKFINGKPQAIESVYVIKSPKDWDRFMRFMERYANDHNLSFTKA 113
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A4D6WUM2_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Dicranema revolutum TaxID=239144 RepID=A0A4D6WUM2_9FLOR) HSP 1 Score: 209 bits (532), Expect = 3.010e-68 Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
MA+IQFI+GINE IP IK+TRS+DGSTGTATFRF++PDILKSDMQEKG+ITGMYLNDEEGSMVTKEVNAKFINGKP AIESIY+IKSPKDWDRFMRFMERYA DNELSFTKAN
Sbjct: 1 MATIQFIKGINENTIPDIKLTRSRDGSTGTATFRFSEPDILKSDMQEKGEITGMYLNDEEGSMVTKEVNAKFINGKPLAIESIYIIKSPKDWDRFMRFMERYANDNELSFTKAN 114
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A6H1U8S6_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Caulacanthus okamurae TaxID=152008 RepID=A0A6H1U8S6_9FLOR) HSP 1 Score: 208 bits (529), Expect = 9.510e-68 Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
MA+IQFIQGINET++ +K+TRSKDGS GTATFRFN+PDILKSDMQ+KGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIE+ Y+IKSPKDWDRFMRFMERY +NELSFTKAN
Sbjct: 4 MANIQFIQGINETVVADVKLTRSKDGSNGTATFRFNNPDILKSDMQDKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIEATYIIKSPKDWDRFMRFMERYGNENELSFTKAN 117
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A342RZC4_9FLOR (Photosystem II reaction center Psb28 protein n=3 Tax=Gigartinales TaxID=28017 RepID=A0A342RZC4_9FLOR) HSP 1 Score: 204 bits (520), Expect = 2.100e-66 Identity = 95/113 (84.07%), Postives = 107/113 (94.69%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
MA+IQFI+GINET++P +K+TRS+DGS GTATFRFNDPDILKS+MQEKGDITGMYL DEEG M+TK+VNAKFING+PQAIESIY+IKSPKDWDRFMRFMERYA DNEL FTKA
Sbjct: 1 MATIQFIKGINETVVPDVKLTRSRDGSNGTATFRFNDPDILKSNMQEKGDITGMYLGDEEGEMITKDVNAKFINGRPQAIESIYIIKSPKDWDRFMRFMERYANDNELLFTKA 113
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A141SDP3_GELEL (Photosystem II reaction center Psb28 protein n=1 Tax=Gelidium elegans TaxID=37200 RepID=A0A141SDP3_GELEL) HSP 1 Score: 199 bits (506), Expect = 2.870e-64 Identity = 93/113 (82.30%), Postives = 105/113 (92.92%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
MA IQFIQGINET++P +K+TRSKDGSTGTATFRFN PDILK+ M++KGDITGMYL DEEG M+TK+VNAKFINGKP+AIESIY+IKSP DWDRFMRFMERYA DN+LSFTKA
Sbjct: 1 MAFIQFIQGINETVVPDVKLTRSKDGSTGTATFRFNQPDILKAGMKDKGDITGMYLKDEEGEMITKDVNAKFINGKPKAIESIYIIKSPLDWDRFMRFMERYANDNQLSFTKA 113
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A6M3WWC8_PTELU (Photosystem II reaction center Psb28 protein n=1 Tax=Pterocladia lucida TaxID=31408 RepID=A0A6M3WWC8_PTELU) HSP 1 Score: 198 bits (503), Expect = 8.230e-64 Identity = 90/113 (79.65%), Postives = 107/113 (94.69%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
MA IQFIQGINET+IP +K+TRS+DGSTGTATFRFN+PDIL+ DM++KGDITGMYL D+EG M+TK+VNAKFINGKP+AIE+IY+IKSP+DWDRFMRFM++YA DNELSFTKA
Sbjct: 1 MALIQFIQGINETVIPDVKLTRSRDGSTGTATFRFNNPDILRPDMEDKGDITGMYLKDDEGDMITKDVNAKFINGKPEAIEAIYIIKSPRDWDRFMRFMDKYADDNELSFTKA 113
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A3G3MG37_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Lithothamnion sp. TaxID=1940749 RepID=A0A3G3MG37_9FLOR) HSP 1 Score: 196 bits (499), Expect = 3.350e-63 Identity = 91/114 (79.82%), Postives = 106/114 (92.98%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
MA+IQFI+GINE +IPYI++TRS+DGSTGTATFRFN PDIL S MQ KGDITGMYL DEEG +VT++VNAKFINGKP+AIESIY+IKSP+DWDRFMRFMERY++DN LSFTKA+
Sbjct: 1 MANIQFIRGINENVIPYIQLTRSRDGSTGTATFRFNSPDILTSAMQNKGDITGMYLRDEEGELVTRDVNAKFINGKPRAIESIYIIKSPEDWDRFMRFMERYSRDNNLSFTKAS 114
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A1C9CB89_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Ahnfeltia plicata TaxID=28023 RepID=A0A1C9CB89_9FLOR) HSP 1 Score: 196 bits (498), Expect = 4.610e-63 Identity = 92/113 (81.42%), Postives = 103/113 (91.15%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKA 339
MA IQFIQGINETI+P +K+TRS+DGSTGTATFRFN+PDIL S M+ KGDITGMYL DEEG +VT++VNAKFINGKPQAIES+Y+IKSP DWDRFMRFMERYA DN LSFTKA
Sbjct: 1 MAVIQFIQGINETIVPDVKLTRSRDGSTGTATFRFNNPDILMSKMESKGDITGMYLKDEEGELVTRDVNAKFINGKPQAIESVYIIKSPDDWDRFMRFMERYANDNNLSFTKA 113
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Match: A0A3G3MFS6_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Synarthrophyton chejuense TaxID=2485825 RepID=A0A3G3MFS6_9FLOR) HSP 1 Score: 195 bits (496), Expect = 9.610e-63 Identity = 89/114 (78.07%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 1 MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIESIYVIKSPKDWDRFMRFMERYAKDNELSFTKAN 342
MA+IQFI+GI+E ++PYI++TRS+DGSTGTATFRFN PDIL S+MQ+KGDITGMYL DEEG +VT++VNAKFING+P+AIESIY+IKSPKDWDRFMRFMERY+ DN LSFTKA+
Sbjct: 1 MANIQFIKGIDENVVPYIQLTRSRDGSTGTATFRFNSPDILTSEMQDKGDITGMYLKDEEGEIVTRDVNAKFINGQPKAIESIYIIKSPKDWDRFMRFMERYSNDNNLSFTKAS 114 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103106.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig103106.458.1 >prot_P-canaliculata_contig103106.458.1 ID=prot_P-canaliculata_contig103106.458.1|Name=mRNA_P-canaliculata_contig103106.458.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=115bp MASIQFIQGINETIIPYIKITRSKDGSTGTATFRFNDPDILKSDMQEKGDback to top mRNA from alignment at P-canaliculata_contig103106:209..553+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig103106.458.1 ID=mRNA_P-canaliculata_contig103106.458.1|Name=mRNA_P-canaliculata_contig103106.458.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at P-canaliculata_contig103106:209..553+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig103106:209..553+ >mRNA_P-canaliculata_contig103106.458.1 ID=mRNA_P-canaliculata_contig103106.458.1|Name=mRNA_P-canaliculata_contig103106.458.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at P-canaliculata_contig103106:209..553+ (Pelvetia canaliculata dioecious)back to top |