mRNA_P-canaliculata_contig103061.444.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103061.444.1
Unique NamemRNA_P-canaliculata_contig103061.444.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103061.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103061contigP-canaliculata_contig103061:367..879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.380853-UTR-P-canaliculata_contig103061:366..3811622815602.380853-UTR-P-canaliculata_contig103061:366..381Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103061 367..381 +
1693494160.5341353-UTR-P-canaliculata_contig103061:366..3811693494160.5341353-UTR-P-canaliculata_contig103061:366..381Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103061 367..381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.3930857-CDS-P-canaliculata_contig103061:381..8791622815602.3930857-CDS-P-canaliculata_contig103061:381..879Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103061 382..879 +
1693494160.5441613-CDS-P-canaliculata_contig103061:381..8791693494160.5441613-CDS-P-canaliculata_contig103061:381..879Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103061 382..879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103061.444.1prot_P-canaliculata_contig103061.444.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103061 382..879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103061.444.1

>prot_P-canaliculata_contig103061.444.1 ID=prot_P-canaliculata_contig103061.444.1|Name=mRNA_P-canaliculata_contig103061.444.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=166bp
MSGCGSDNDSIADSSPSNQTSSPAPDVISADREILSDPSGNDTSAIAGLW
NANTLEEERFVEISNDGLYTDFTFNSEEGNCYFVTPMTLDLELEATDSTP
ATFSTSDGRSFTAGVIDSRLAVSQIADDSILGVEVDTTTQFWTAAEGIMT
IDLPECPPEVPIEEP*
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mRNA from alignment at P-canaliculata_contig103061:367..879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103061.444.1 ID=mRNA_P-canaliculata_contig103061.444.1|Name=mRNA_P-canaliculata_contig103061.444.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at P-canaliculata_contig103061:367..879+ (Pelvetia canaliculata dioecious)
ATTTCACTTCTGTCAATGTCCGGTTGTGGCTCGGACAACGATTCAATCGC
CGATTCGAGCCCAAGTAATCAGACGTCATCTCCAGCGCCTGATGTCATAT
CCGCCGATCGGGAAATTCTCTCCGACCCAAGCGGGAATGACACTAGTGCT
ATTGCCGGATTGTGGAACGCAAACACACTCGAAGAAGAACGTTTCGTAGA
AATTTCAAACGACGGACTGTACACAGACTTCACATTTAATAGCGAAGAGG
GTAATTGCTACTTCGTCACGCCAATGACGCTAGATCTGGAACTCGAAGCG
ACCGACTCGACACCGGCCACCTTCAGCACATCGGATGGTCGGAGCTTCAC
TGCAGGGGTCATCGATTCGCGACTGGCTGTCAGTCAGATCGCCGATGATT
CTATCCTGGGCGTGGAGGTTGACACTACTACGCAGTTTTGGACTGCGGCT
GAAGGAATTATGACGATCGACCTGCCAGAGTGTCCGCCAGAAGTGCCAAT
CGAAGAGCCTTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103061:367..879+

>mRNA_P-canaliculata_contig103061.444.1 ID=mRNA_P-canaliculata_contig103061.444.1|Name=mRNA_P-canaliculata_contig103061.444.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at P-canaliculata_contig103061:367..879+ (Pelvetia canaliculata dioecious)
ATGTCCGGTTGTGGCTCGGACAACGATTCAATCGCCGATTCGAGCCCAAG
TAATCAGACGTCATCTCCAGCGCCTGATGTCATATCCGCCGATCGGGAAA
TTCTCTCCGACCCAAGCGGGAATGACACTAGTGCTATTGCCGGATTGTGG
AACGCAAACACACTCGAAGAAGAACGTTTCGTAGAAATTTCAAACGACGG
ACTGTACACAGACTTCACATTTAATAGCGAAGAGGGTAATTGCTACTTCG
TCACGCCAATGACGCTAGATCTGGAACTCGAAGCGACCGACTCGACACCG
GCCACCTTCAGCACATCGGATGGTCGGAGCTTCACTGCAGGGGTCATCGA
TTCGCGACTGGCTGTCAGTCAGATCGCCGATGATTCTATCCTGGGCGTGG
AGGTTGACACTACTACGCAGTTTTGGACTGCGGCTGAAGGAATTATGACG
ATCGACCTGCCAGAGTGTCCGCCAGAAGTGCCAATCGAAGAGCCTTAAAT
GTCCGGTTGTGGCTCGGACAACGATTCAATCGCCGATTCGAGCCCAAGTA
ATCAGACGTCATCTCCAGCGCCTGATGTCATATCCGCCGATCGGGAAATT
CTCTCCGACCCAAGCGGGAATGACACTAGTGCTATTGCCGGATTGTGGAA
CGCAAACACACTCGAAGAAGAACGTTTCGTAGAAATTTCAAACGACGGAC
TGTACACAGACTTCACATTTAATAGCGAAGAGGGTAATTGCTACTTCGTC
ACGCCAATGACGCTAGATCTGGAACTCGAAGCGACCGACTCGACACCGGC
CACCTTCAGCACATCGGATGGTCGGAGCTTCACTGCAGGGGTCATCGATT
CGCGACTGGCTGTCAGTCAGATCGCCGATGATTCTATCCTGGGCGTGGAG
GTTGACACTACTACGCAGTTTTGGACTGCGGCTGAAGGAATTATGACGAT
CGACCTGCCAGAGTGTCCGCCAGAAGTGCCAATCGAAGAGCCTTAA
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