mRNA_P-canaliculata_contig1030.433.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 182 bits (463), Expect = 4.290e-53 Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
+GGDCDELRIQSTG TDFHEVR HGGS+YFE+TIVTSWD K+PQ Y GRSF+NCVSE C G +QN+ GECRMDIINSE+GYLGY DSESYGLTWKVRGFC D
Sbjct: 149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 176 bits (447), Expect = 3.790e-52 Identity = 78/110 (70.91%), Postives = 90/110 (81.82%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWD K PQ YE GRSF+NCVSE C+G ++ND GECRMDIINSEMGY+G+ D+ESYGLTWKVRGFC D
Sbjct: 41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 176 bits (446), Expect = 3.980e-52 Identity = 83/118 (70.34%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWK--------VRGFCTD 333
GGDC++LRIQSTGS DFHEVRGHGGSLYFE+TIVTSWD K PQ YE GRSF+NCVSE DCEG ++N+ GECRMDIINSE+ YLGY DSESYG+TWK VRGFC D
Sbjct: 62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 184 bits (467), Expect = 5.670e-52 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
GGDC++LRIQSTGS DFHEVRGHGGSLYFE+TIVTSWD K PQ YE+GRSF+NCVSE DCEG ++N+ GECRMDIINSE+ YLGY DSESYG+TWKVRGFC D
Sbjct: 513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 172 bits (437), Expect = 9.780e-50 Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVR---------GFCTD 333
GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWD K PQ YE GRSF+NCVSE C+GM++ND GECRMDIINSEMGY+G+ DSESYGLTWKVR GFC D
Sbjct: 86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI) HSP 1 Score: 155 bits (392), Expect = 5.300e-47 Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
+GG+C ELRI+ST +DF E+RGHGG+LYFE+TIVTSWD D + PQ Y+ GRSFI CVSE D + N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC+D
Sbjct: 3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 158 bits (399), Expect = 2.800e-44 Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
+GG+C ELRI+ST +DF E+RGHGG+LYFE+TIVTSWD D + PQ Y+DGRSFI CVSE D + N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC+D
Sbjct: 74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.730e-36 Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
GGD LRIQSTGS D++E+RGHGGSL F +T VTSWD D K T+Y+ RSFI CVSE A C+G + N GECRMDII SEMG +GY +ESYG++WKVRG+C++
Sbjct: 466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.920e-36 Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
GGD DELR+ ST T F +R HGGSL F +T V SWD T SP D DGRS+I+ +SE D CEG ++N GE RMDI +SE+GYLGY DSESYGLTWKVRGFC D
Sbjct: 19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.080e-35 Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
GGD DELR+ ST T + +R HGGSL F T V SWD T SP D DGRS+I+ +SE D CEG ++N GE RMDI NSE+GYLG++DSESYGLTWKVRGFC D
Sbjct: 128 GGDADELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKD 238 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig1030.433.1 >prot_P-canaliculata_contig1030.433.1 ID=prot_P-canaliculata_contig1030.433.1|Name=mRNA_P-canaliculata_contig1030.433.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=111bp LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEback to top mRNA from alignment at P-canaliculata_contig1030:18610..18942+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig1030.433.1 ID=mRNA_P-canaliculata_contig1030.433.1|Name=mRNA_P-canaliculata_contig1030.433.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at P-canaliculata_contig1030:18610..18942+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig1030:18610..18942+ >mRNA_P-canaliculata_contig1030.433.1 ID=mRNA_P-canaliculata_contig1030.433.1|Name=mRNA_P-canaliculata_contig1030.433.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at P-canaliculata_contig1030:18610..18942+ (Pelvetia canaliculata dioecious)back to top |