mRNA_P-canaliculata_contig1030.433.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1030.433.1
Unique NamemRNA_P-canaliculata_contig1030.433.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 4.290e-53
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            +GGDCDELRIQSTG TDFHEVR HGGS+YFE+TIVTSWD   K+PQ  Y  GRSF+NCVSE      C G +QN+ GECRMDIINSE+GYLGY DSESYGLTWKVRGFC D
Sbjct:  149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.790e-52
Identity = 78/110 (70.91%), Postives = 90/110 (81.82%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGDCDELRIQSTG  D++EVRGHGGS+YF +T+VTSWD   K PQ  YE GRSF+NCVSE      C+G ++ND GECRMDIINSEMGY+G+ D+ESYGLTWKVRGFC D
Sbjct:   41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.980e-52
Identity = 83/118 (70.34%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWK--------VRGFCTD 333
            GGDC++LRIQSTGS DFHEVRGHGGSLYFE+TIVTSWD   K PQ  YE GRSF+NCVSE     DCEG ++N+ GECRMDIINSE+ YLGY DSESYG+TWK        VRGFC D
Sbjct:   62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 5.670e-52
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGDC++LRIQSTGS DFHEVRGHGGSLYFE+TIVTSWD   K PQ  YE+GRSF+NCVSE     DCEG ++N+ GECRMDIINSE+ YLGY DSESYG+TWKVRGFC D
Sbjct:  513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 9.780e-50
Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVR---------GFCTD 333
            GGDCDELRIQSTG  D++EVRGHGGS+YF +T+VTSWD   K PQ  YE GRSF+NCVSE      C+GM++ND GECRMDIINSEMGY+G+ DSESYGLTWKVR         GFC D
Sbjct:   86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.300e-47
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            +GG+C ELRI+ST  +DF E+RGHGG+LYFE+TIVTSWD D + PQ  Y+ GRSFI CVSE     D   +  N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC+D
Sbjct:    3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.800e-44
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            +GG+C ELRI+ST  +DF E+RGHGG+LYFE+TIVTSWD D + PQ  Y+DGRSFI CVSE     D   +  N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC+D
Sbjct:   74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.730e-36
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGD   LRIQSTGS D++E+RGHGGSL F +T VTSWD D K   T+Y+  RSFI CVSE  A     C+G + N  GECRMDII SEMG +GY  +ESYG++WKVRG+C++
Sbjct:  466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.920e-36
Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGD DELR+ ST  T F  +R HGGSL F +T V SWD  T SP  D  DGRS+I+ +SE     D  CEG ++N  GE RMDI +SE+GYLGY DSESYGLTWKVRGFC D
Sbjct:   19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129          
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.080e-35
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CEGMSQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGD DELR+ ST  T +  +R HGGSL F  T V SWD  T SP  D  DGRS+I+ +SE     D  CEG ++N  GE RMDI NSE+GYLG++DSESYGLTWKVRGFC D
Sbjct:  128 GGDADELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKD 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1030.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI4.290e-5374.77Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FIU4_ECTSI3.790e-5270.91Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE3.980e-5270.34MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI5.670e-5275.45Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE9.780e-5067.23MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FZV0_ECTSI5.300e-4764.86Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI2.800e-4465.77Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE2.730e-3659.82MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KES9_9PHAE2.920e-3660.71MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A6H5JU98_9PHAE2.080e-3559.82MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1030contigP-canaliculata_contig1030:18610..18942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue5.4e-45
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.7511425-CDS-P-canaliculata_contig1030:18609..189421622815601.7511425-CDS-P-canaliculata_contig1030:18609..18942Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1030 18610..18942 +
1693494160.1828039-CDS-P-canaliculata_contig1030:18609..189421693494160.1828039-CDS-P-canaliculata_contig1030:18609..18942Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1030 18610..18942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1030.433.1prot_P-canaliculata_contig1030.433.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1030 18610..18942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1030.433.1

>prot_P-canaliculata_contig1030.433.1 ID=prot_P-canaliculata_contig1030.433.1|Name=mRNA_P-canaliculata_contig1030.433.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=111bp
LGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYE
DGRSFINCVSEYNATVDCEGMSQNDYGECRMDIINSEMGYLGYKDSESYG
LTWKVRGFCTD
back to top

mRNA from alignment at P-canaliculata_contig1030:18610..18942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1030.433.1 ID=mRNA_P-canaliculata_contig1030.433.1|Name=mRNA_P-canaliculata_contig1030.433.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at P-canaliculata_contig1030:18610..18942+ (Pelvetia canaliculata dioecious)
CTTGGGGGCGACTGCGACGAGCTTCGCATCCAGTCGACGGGGTCCACTGA CTTCCACGAGGTTAGGGGTCACGGAGGCAGCCTATACTTTGAGAACACCA TCGTGACATCGTGGGACCCAGACACAAAGTCGCCGCAGACGGATTATGAG GACGGGCGCTCGTTCATTAACTGTGTCTCCGAGTACAATGCCACGGTGGA CTGTGAAGGCATGTCCCAGAACGACTACGGTGAGTGCCGCATGGACATCA TCAACTCTGAGATGGGGTACCTGGGCTACAAAGACTCGGAGTCGTATGGA TTAACATGGAAAGTCCGCGGTTTCTGCACCGAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig1030:18610..18942+

>mRNA_P-canaliculata_contig1030.433.1 ID=mRNA_P-canaliculata_contig1030.433.1|Name=mRNA_P-canaliculata_contig1030.433.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at P-canaliculata_contig1030:18610..18942+ (Pelvetia canaliculata dioecious)
CTTGGGGGCGACTGCGACGAGCTTCGCATCCAGTCGACGGGGTCCACTGA
CTTCCACGAGGTTAGGGGTCACGGAGGCAGCCTATACTTTGAGAACACCA
TCGTGACATCGTGGGACCCAGACACAAAGTCGCCGCAGACGGATTATGAG
GACGGGCGCTCGTTCATTAACTGTGTCTCCGAGTACAATGCCACGGTGGA
CTGTGAAGGCATGTCCCAGAACGACTACGGTGAGTGCCGCATGGACATCA
TCAACTCTGAGATGGGGTACCTGGGCTACAAAGACTCGGAGTCGTATGGA
TTAACATGGAAAGTCCGCGGTTTCTGCACCGACCTTGGGGGCGACTGCGA
CGAGCTTCGCATCCAGTCGACGGGGTCCACTGACTTCCACGAGGTTAGGG
GTCACGGAGGCAGCCTATACTTTGAGAACACCATCGTGACATCGTGGGAC
CCAGACACAAAGTCGCCGCAGACGGATTATGAGGACGGGCGCTCGTTCAT
TAACTGTGTCTCCGAGTACAATGCCACGGTGGACTGTGAAGGCATGTCCC
AGAACGACTACGGTGAGTGCCGCATGGACATCATCAACTCTGAGATGGGG
TACCTGGGCTACAAAGACTCGGAGTCGTATGGATTAACATGGAAAGTCCG
CGGTTTCTGCACCGAC
back to top