mRNA_P-canaliculata_contig102909.427.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102909.427.1
Unique NamemRNA_P-canaliculata_contig102909.427.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102909.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102909contigP-canaliculata_contig102909:500..976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size465
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.372115-UTR-P-canaliculata_contig102909:499..5111622815601.372115-UTR-P-canaliculata_contig102909:499..511Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102909 500..511 +
1693494160.014224-UTR-P-canaliculata_contig102909:499..5111693494160.014224-UTR-P-canaliculata_contig102909:499..511Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102909 500..511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.3839502-CDS-P-canaliculata_contig102909:511..9761622815601.3839502-CDS-P-canaliculata_contig102909:511..976Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102909 512..976 +
1693494160.0229638-CDS-P-canaliculata_contig102909:511..9761693494160.0229638-CDS-P-canaliculata_contig102909:511..976Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102909 512..976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102909.427.1prot_P-canaliculata_contig102909.427.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102909 512..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102909.427.1

>prot_P-canaliculata_contig102909.427.1 ID=prot_P-canaliculata_contig102909.427.1|Name=mRNA_P-canaliculata_contig102909.427.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=155bp
MLAPINELESDNGYLPPRITAFEMLLNWGAPVELPSFGQLITKLDLSNSD
VDDNTMLLLAKLGNLEELNLSNTQVTKLGLSRLKPLLHLSLIELNTRQVT
DDNIQALTEIDLLDKISAVGWKRIDGTVVRTGPLTEVESLSLAYRKLTDQ
GLKAF
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mRNA from alignment at P-canaliculata_contig102909:500..976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102909.427.1 ID=mRNA_P-canaliculata_contig102909.427.1|Name=mRNA_P-canaliculata_contig102909.427.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at P-canaliculata_contig102909:500..976+ (Pelvetia canaliculata dioecious)
GTCAAAAAGTTTATGTTGGCACCTATCAATGAGCTTGAGTCAGATAATGG
ATACTTGCCGCCACGGATTACCGCCTTCGAAATGTTGCTCAACTGGGGTG
CCCCTGTCGAGCTGCCCAGTTTTGGGCAATTAATCACTAAACTAGATTTA
AGCAATTCAGACGTGGACGACAACACGATGTTATTGCTGGCAAAGCTTGG
CAACCTCGAAGAATTGAATTTGAGTAATACTCAAGTTACGAAGCTTGGTC
TATCGCGGCTCAAACCTTTACTGCATCTTTCGCTTATTGAATTGAATACT
CGTCAAGTAACCGACGACAACATTCAGGCACTAACGGAGATTGATTTGCT
CGACAAGATTTCGGCGGTTGGCTGGAAACGTATTGATGGAACGGTGGTCC
GTACAGGCCCGCTCACGGAGGTTGAAAGTTTAAGTTTGGCCTATCGCAAA
TTGACTGATCAGGGACTCAAGGCATTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig102909:500..976+

>mRNA_P-canaliculata_contig102909.427.1 ID=mRNA_P-canaliculata_contig102909.427.1|Name=mRNA_P-canaliculata_contig102909.427.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at P-canaliculata_contig102909:500..976+ (Pelvetia canaliculata dioecious)
ATGTTGGCACCTATCAATGAGCTTGAGTCAGATAATGGATACTTGCCGCC
ACGGATTACCGCCTTCGAAATGTTGCTCAACTGGGGTGCCCCTGTCGAGC
TGCCCAGTTTTGGGCAATTAATCACTAAACTAGATTTAAGCAATTCAGAC
GTGGACGACAACACGATGTTATTGCTGGCAAAGCTTGGCAACCTCGAAGA
ATTGAATTTGAGTAATACTCAAGTTACGAAGCTTGGTCTATCGCGGCTCA
AACCTTTACTGCATCTTTCGCTTATTGAATTGAATACTCGTCAAGTAACC
GACGACAACATTCAGGCACTAACGGAGATTGATTTGCTCGACAAGATTTC
GGCGGTTGGCTGGAAACGTATTGATGGAACGGTGGTCCGTACAGGCCCGC
TCACGGAGGTTGAAAGTTTAAGTTTGGCCTATCGCAAATTGACTGATCAG
GGACTCAAGGCATTTATGTTGGCACCTATCAATGAGCTTGAGTCAGATAA
TGGATACTTGCCGCCACGGATTACCGCCTTCGAAATGTTGCTCAACTGGG
GTGCCCCTGTCGAGCTGCCCAGTTTTGGGCAATTAATCACTAAACTAGAT
TTAAGCAATTCAGACGTGGACGACAACACGATGTTATTGCTGGCAAAGCT
TGGCAACCTCGAAGAATTGAATTTGAGTAATACTCAAGTTACGAAGCTTG
GTCTATCGCGGCTCAAACCTTTACTGCATCTTTCGCTTATTGAATTGAAT
ACTCGTCAAGTAACCGACGACAACATTCAGGCACTAACGGAGATTGATTT
GCTCGACAAGATTTCGGCGGTTGGCTGGAAACGTATTGATGGAACGGTGG
TCCGTACAGGCCCGCTCACGGAGGTTGAAAGTTTAAGTTTGGCCTATCGC
AAATTGACTGATCAGGGACTCAAGGCATTT
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