mRNA_P-canaliculata_contig10289.425.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10289.425.1
Unique NamemRNA_P-canaliculata_contig10289.425.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10289.425.1 vs. uniprot
Match: A0A6H5KEJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ4_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 6.910e-99
Identity = 149/195 (76.41%), Postives = 164/195 (84.10%), Query Frame = 1 
Query:    1 GHFLWGYVDQLDWMRRSGRLSSVPGSVKVDRKSWWGRVSFALTIAPLAAAVESGLWEED---AVSILDA--------EDLQLPEMRRAVRAWCRVWRFNDFDILSRVAMSMPVHDALQERVRRAQWAAHLESLDAVDSLYGKEFDGLPSSAEREFARGWCRSARLFAAAAAHTNIDRVLLPLGAGYPPERILMDD 552
            GHFLWGYVDQLDWMRRSGRLSS PGS+KVD  SWWGRVSFALTI PL AAVESG W++D   A+S+L          +DLQLPE+RRAVRAW RVWRF D DI  RV + MPVHD+LQERVRRAQWAAHLESLDAV++LYGKEFD LPS AEREFARGWCR+ARLFAAAAAHTN++R LLPLGAGY PER+L DD
Sbjct:  249 GHFLWGYVDQLDWMRRSGRLSSTPGSIKVDPNSWWGRVSFALTIVPLVAAVESGAWDDDQVAAISVLGVSGDGSGRNDDLQLPELRRAVRAWRRVWRFRDPDIADRVVLDMPVHDSLQERVRRAQWAAHLESLDAVEALYGKEFDMLPSKAEREFARGWCRAARLFAAAAAHTNLERCLLPLGAGYAPERLLTDD 443
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BLAST of mRNA_P-canaliculata_contig10289.425.1 vs. uniprot
Match: D8LBR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.460e-43
Identity = 90/184 (48.91%), Postives = 98/184 (53.26%), Query Frame = 1 
Query:    1 GHFLWGYVDQLDWMRRSGRLSSVPGSVKVDRKSWWGRVSFALTIAPLAAAVESGLWEEDAVSILDAEDLQLPEMRRAVRAWCRVWRFNDFDILSRVAMSMPVHDALQERVRRAQWAAHLESLDAVDSLYGKEFDGLPSSAEREFARGWCRSARLFAAAAAHTNIDRVLLPLGAGYPPERILMDD 552
            GHFLWGYVDQLDWMRRSGRLSS PGS+K                                                                               ER+RRAQWAAHLESLDAV++LYGKEFD LPS AEREFARGWCR+ARLFA AAAHTN++R LLPLGAGY PER+L DD
Sbjct:  249 GHFLWGYVDQLDWMRRSGRLSSTPGSIK-------------------------------------------------------------------------------ERIRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARLFAVAAAHTNLERCLLPLGAGYAPERLLTDD 353
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BLAST of mRNA_P-canaliculata_contig10289.425.1 vs. uniprot
Match: A0A7S1YVL5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YVL5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.210e-9
Identity = 58/196 (29.59%), Postives = 85/196 (43.37%), Query Frame = 1 
Query:    4 HFLWGYVDQLDWMRRSGRLS-------SVPGSVKVDRKSWWGRVSFALTIAPLAAAVESGLWEEDAVSILDAEDLQLPEMRRA----VRAWCRVWRFNDFDILSRVAMSMPVHDALQERVRRAQWAAHLESLDAVDSLYGKEFDGLPSSAEREFARGWCRSARLFAAAA-AHTNIDRVLLPLGAGYPPERIL-MDD 552
            H+LW Y+ QLDW RRSGRLS       +V   V + + SW+G ++    +A   AA   GL      SI  ++D    E   A    V  W         + +     S  + D   +      W AH  ++ A    + K  + L    ER+F+ G+CR   L  A +  H  +D  L+ +G G+ P   L MDD
Sbjct:   62 HWLWAYLGQLDWQRRSGRLSDPTTDTKAVEKDVTISKDSWFGYMNRNFLVALYMAAANLGL--VPLFSIRKSDDDMDVERDAAFIQCVDIWTTFLSGPHQEYIESCTSSTALKDEAYDVYYTKLWEAH-NNIIATSIQHAKRMEVLLPEIERKFSLGFCRVPELLQAMSWTHLGVDS-LMRIGIGHLPSVFLRMDD 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10289.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KEJ4_9PHAE6.910e-9976.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBR8_ECTSI4.460e-4348.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1YVL5_9STRA2.210e-929.59Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10289contigP-canaliculata_contig10289:4476..5027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog44689.DDB0252634
Preferred nameC6orf58
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
EggNOG free text desc.Leg1
EggNOG OGs28P36@1,2QVPP@2759,3XH8S@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002960.1
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.1888428-CDS-P-canaliculata_contig10289:4475..50271622815601.1888428-CDS-P-canaliculata_contig10289:4475..5027Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10289 4476..5027 +
1693494159.9050727-CDS-P-canaliculata_contig10289:4475..50271693494159.9050727-CDS-P-canaliculata_contig10289:4475..5027Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10289 4476..5027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10289.425.1prot_P-canaliculata_contig10289.425.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10289 4476..5027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10289.425.1

>prot_P-canaliculata_contig10289.425.1 ID=prot_P-canaliculata_contig10289.425.1|Name=mRNA_P-canaliculata_contig10289.425.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=184bp
GHFLWGYVDQLDWMRRSGRLSSVPGSVKVDRKSWWGRVSFALTIAPLAAA
VESGLWEEDAVSILDAEDLQLPEMRRAVRAWCRVWRFNDFDILSRVAMSM
PVHDALQERVRRAQWAAHLESLDAVDSLYGKEFDGLPSSAEREFARGWCR
SARLFAAAAAHTNIDRVLLPLGAGYPPERILMDD
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mRNA from alignment at P-canaliculata_contig10289:4476..5027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10289.425.1 ID=mRNA_P-canaliculata_contig10289.425.1|Name=mRNA_P-canaliculata_contig10289.425.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig10289:4476..5027+ (Pelvetia canaliculata dioecious)
GGACACTTTCTGTGGGGATATGTCGACCAACTCGACTGGATGAGGCGTTC
GGGACGCCTGTCAAGTGTGCCGGGGTCCGTCAAGGTCGACAGGAAATCGT
GGTGGGGACGCGTGAGCTTTGCCTTGACCATTGCTCCCCTGGCCGCAGCG
GTAGAGAGCGGACTGTGGGAAGAGGACGCCGTCTCTATTCTAGACGCGGA
AGATCTTCAGCTGCCGGAGATGCGGCGCGCGGTACGAGCTTGGTGCCGAG
TGTGGCGCTTTAACGACTTCGACATACTCTCCAGGGTGGCAATGAGCATG
CCGGTGCACGACGCCCTCCAGGAGCGAGTGCGTCGGGCGCAGTGGGCGGC
GCATCTGGAGTCGCTAGATGCTGTCGACTCACTCTACGGCAAGGAGTTCG
ACGGGCTGCCGTCGTCCGCGGAGCGCGAGTTTGCGCGCGGTTGGTGTCGA
TCGGCCCGTCTGTTCGCCGCCGCCGCCGCGCACACCAACATCGATCGGGT
CTTGCTCCCGCTTGGGGCAGGATACCCTCCGGAACGGATACTGATGGATG
AC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10289:4476..5027+

>mRNA_P-canaliculata_contig10289.425.1 ID=mRNA_P-canaliculata_contig10289.425.1|Name=mRNA_P-canaliculata_contig10289.425.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at P-canaliculata_contig10289:4476..5027+ (Pelvetia canaliculata dioecious)
GGACACTTTCTGTGGGGATATGTCGACCAACTCGACTGGATGAGGCGTTC
GGGACGCCTGTCAAGTGTGCCGGGGTCCGTCAAGGTCGACAGGAAATCGT
GGTGGGGACGCGTGAGCTTTGCCTTGACCATTGCTCCCCTGGCCGCAGCG
GTAGAGAGCGGACTGTGGGAAGAGGACGCCGTCTCTATTCTAGACGCGGA
AGATCTTCAGCTGCCGGAGATGCGGCGCGCGGTACGAGCTTGGTGCCGAG
TGTGGCGCTTTAACGACTTCGACATACTCTCCAGGGTGGCAATGAGCATG
CCGGTGCACGACGCCCTCCAGGAGCGAGTGCGTCGGGCGCAGTGGGCGGC
GCATCTGGAGTCGCTAGATGCTGTCGACTCACTCTACGGCAAGGAGTTCG
ACGGGCTGCCGTCGTCCGCGGAGCGCGAGTTTGCGCGCGGTTGGTGTCGA
TCGGCCCGTCTGTTCGCCGCCGCCGCCGCGCACACCAACATCGATCGGGT
CTTGCTCCCGCTTGGGGCAGGATACCCTCCGGAACGGATACTGATGGATG
ACGGACACTTTCTGTGGGGATATGTCGACCAACTCGACTGGATGAGGCGT
TCGGGACGCCTGTCAAGTGTGCCGGGGTCCGTCAAGGTCGACAGGAAATC
GTGGTGGGGACGCGTGAGCTTTGCCTTGACCATTGCTCCCCTGGCCGCAG
CGGTAGAGAGCGGACTGTGGGAAGAGGACGCCGTCTCTATTCTAGACGCG
GAAGATCTTCAGCTGCCGGAGATGCGGCGCGCGGTACGAGCTTGGTGCCG
AGTGTGGCGCTTTAACGACTTCGACATACTCTCCAGGGTGGCAATGAGCA
TGCCGGTGCACGACGCCCTCCAGGAGCGAGTGCGTCGGGCGCAGTGGGCG
GCGCATCTGGAGTCGCTAGATGCTGTCGACTCACTCTACGGCAAGGAGTT
CGACGGGCTGCCGTCGTCCGCGGAGCGCGAGTTTGCGCGCGGTTGGTGTC
GATCGGCCCGTCTGTTCGCCGCCGCCGCCGCGCACACCAACATCGATCGG
GTCTTGCTCCCGCTTGGGGCAGGATACCCTCCGGAACGGATACTGATGGA
TGAC
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