mRNA_P-canaliculata_contig10285.422.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10285.422.1
Unique NamemRNA_P-canaliculata_contig10285.422.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: A0A6H5KHI4_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHI4_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 4.210e-98
Identity = 169/241 (70.12%), Postives = 187/241 (77.59%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRP-------------------RGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTVEQIQTVLDSGALPSLV+LASSQ  DP+DPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLV+EGGI+VL  LLNQS+MV MALEGLERILQVGDKEA+RL++       G+  G                             +GNPYAALLQATKIELLE+HK   VAKR+QRIRK Y+VRCAIC Q  SKAS +T FC ECKC+VC+DCDC RFHLEFQ+ELWK
Sbjct:   71 EACWTLSNIAAGTVEQIQTVLDSGALPSLVELASSQCLDPADPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVQEGGIKVLGELLNQSSMVMMALEGLERILQVGDKEAYRLMV-------GDSVGXXXXXXXXXXXXXXXXXXXXXXXXXGGLTKGNPYAALLQATKIELLETHKNTQVAKRAQRIRKRYYVRCAICNQSFSKASQRTLFCPECKCEVCRDCDCTRFHLEFQQELWK 304
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BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: D8LCJ1_ECTSI (Armadillo/beta-catenin-like repeat domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ1_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 2.430e-97
Identity = 169/242 (69.83%), Postives = 186/242 (76.86%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRP--------------------RGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTVEQIQTVLDSGALPSLV+LASSQ  DP+DPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLV+EGGI+VL  LLNQS+MV MALEGLERILQVGDKEA+RL++         D G                              +GNPYAALLQATKIELLE+HK   VAKR+QRIRK Y+VRCAIC Q  SKAS +T FC ECKC+VC+DCDC RFHLEFQ+ELWK
Sbjct:  221 EACWTLSNIAAGTVEQIQTVLDSGALPSLVELASSQCLDPADPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVQEGGIKVLGELLNQSSMVMMALEGLERILQVGDKEAYRLMVG--------DSGXXXXXXXXXXXXXXXXXXXXXXXXXXGGLTKGNPYAALLQATKIELLETHKNTQVAKRAQRIRKRYYVRCAICNQSFSKASQRTHFCPECKCEVCRDCDCTRFHLEFQQELWK 454
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: A0A7S2R949_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R949_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.280e-66
Identity = 127/222 (57.21%), Postives = 151/222 (68.02%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGT+EQIQTVLDSGA+P LV+LAS            G DPEV++EA W VLNATSCGSD QIEYLV+ G + VL  LL +++MV MALEGLERILQVGD+EA R              G G          NPYAAL  +++IE LE+HK+ A+AKR+ RI K +FV CAIC    SK S + RFC ECKC VC +C+C  FHL +QEELWK
Sbjct:  344 EACWTLSNIAAGTIEQIQTVLDSGAVPPLVELASLP----------GTDPEVKNEACWVVLNATSCGSDFQIEYLVRHGCVSVLGELLAETSMVMMALEGLERILQVGDEEAKR--------------GTGT---------NPYAALFSSSRIEELENHKSSAIAKRASRIWKQHFVTCAICNSSYSKHSAEARFCDECKCHVCVNCNCTVFHLSYQEELWK 532
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BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: A0A067CNS0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CNS0_SAPPC)

HSP 1 Score: 219 bits (559), Expect = 9.570e-64
Identity = 125/222 (56.31%), Postives = 145/222 (65.32%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTV+QIQ VLDSG +PSL+ LASS   D           EVRSEA W VLNATSCGSD QIEYLV EG I++L  LL +++MV MALEGLERILQVG+ EA RL                       P  NPYA L+ +  IE L SHK+  VAKR+ RI + +FV CAIC    SK S  T FC ECKC+VCK+CDC  FHL++QE LWK
Sbjct:  309 EACWTLSNIAAGTVDQIQCVLDSGCIPSLMNLASSDATDT----------EVRSEACWVVLNATSCGSDSQIEYLVNEGCIQILGNLLEETSMVMMALEGLERILQVGELEAKRL---------------------DAP--NPYAGLMASANIETLVSHKSATVAKRATRIWQQHFVTCAICMGAFSKHSNDTFFCAECKCNVCKNCDCTIFHLKYQESLWK 497
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BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: A0A485LIM5_9STRA (Aste57867_21593 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485LIM5_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.230e-62
Identity = 123/222 (55.41%), Postives = 145/222 (65.32%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTV+QIQ VLDSG +PSL+ LASS   D           EVRSEA W VLNATSCGSD QIEYLV EG I++L  LL +++MV MALEGLERILQVG+ EA R                        P  NPYA+L+ +  IE L SHK+  VAKR+ RI + +FV CAIC    SK S  T FC ECKC+VCK+CDC  FHL++QE LW+
Sbjct:  417 EACWTLSNIAAGTVDQIQCVLDSGCIPSLMGLASSDATDA----------EVRSEACWVVLNATSCGSDSQIEYLVNEGCIQILGNLLEETSMVMMALEGLERILQVGELEAKRT---------------------DSP--NPYASLMASANIETLVSHKSATVAKRATRIWQQHFVTCAICSGAFSKHSNDTFFCAECKCNVCKNCDCTVFHLKYQESLWQ 605
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: W7TNF0_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF0_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.810e-61
Identity = 122/221 (55.20%), Postives = 147/221 (66.52%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELW 663
            +ACWTLSNIAAGT +QIQTVLDSGA+P LV+LA   PA+         D EVRSEA W VLNATSCGSD QIE+LV++G ++VL  LL ++ MV MALEGLER+LQVG++E                   G+  G      NPYAA+L A KIE LE H+ P +AKR+ RI K +FV CAIC+Q  SK +   RFC ECKC VC  C+C  FHL +QEELW
Sbjct:  379 EACWTLSNIAAGTCDQIQTVLDSGAIPLLVELALQPPAE--------TDAEVRSEACWVVLNATSCGSDAQIEFLVRQGCVQVLGDLLGEANMVMMALEGLERMLQVGEEE-------------------GLRSGTA----NPYAAMLPAGKIEELEHHRQPGIAKRASRIWKDHFVTCAICQQTFSKQAPDVRFCGECKCYVCVKCNCTVFHLSYQEELW 568
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: A0A421GKL1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GKL1_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.820e-61
Identity = 121/222 (54.50%), Postives = 144/222 (64.86%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTV+QIQ VLDSG +PSL+ LA+S   D           EV+SEA W VLNATSCGSD QIEYLV +G I++L  LL +++MV MALEGLERILQVG+ EA R                        P  NPYA+L+ +  IE L SHK+  VAKR+ RI + +FV CAIC    SK S  T FC ECKC+VCK CDC  FHL++QE LWK
Sbjct:  242 EACWTLSNIAAGTVDQIQCVLDSGCIPSLMGLAASDTTDA----------EVKSEACWVVLNATSCGSDSQIEYLVNQGCIQILGNLLEETSMVMMALEGLERILQVGELEAKRT---------------------DAP--NPYASLMASANIETLVSHKSATVAKRASRIWQQHFVTCAICLGPFSKHSNDTFFCAECKCNVCKICDCTVFHLKYQESLWK 430
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: K3WWN8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWN8_GLOUD)

HSP 1 Score: 214 bits (546), Expect = 8.290e-61
Identity = 123/222 (55.41%), Postives = 145/222 (65.32%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTV+QIQ VLDSG +PSL+ LASS   D           EV+SEA W VLNATSCGSD QIEYLV EG I++L  LL +++MV MALEGLERILQVG+ EA R                        P  NPYA+L+ +  IE L SHK+  VAKR+ RI + +FV CAIC    SK S  T FC ECKC+VCK+CDC  FHL++QE LWK
Sbjct:  466 EACWTLSNIAAGTVDQIQCVLDSGCIPSLMGLASSDATDA----------EVKSEACWVVLNATSCGSDSQIEYLVNEGCIQILGNLLEETSMVMMALEGLERILQVGELEAKRT---------------------DSP--NPYASLMASANIETLVSHKSATVAKRASRIWQQHFVTCAICMGPFSKHSNDTFFCDECKCNVCKNCDCTVFHLKYQESLWK 654
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: F0X0G9_9STRA (Importin subunit alpha putative n=2 Tax=Albugo TaxID=65356 RepID=F0X0G9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.300e-60
Identity = 121/222 (54.50%), Postives = 145/222 (65.32%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTV+QIQ VLDSG +PSL+ LAS++  D           EV+SEA W VLNATSCGSD QIEYLV EG I++L  LL +++MV MALEGLERILQVG+ EA R                        P  NPYA L+ +  IE L +HK+  VAKR+ RI + +FV CAIC    SK S  T FC ECKC+VCK+CDC  FHL++QE LWK
Sbjct:  463 EACWTLSNIAAGTVDQIQCVLDSGCIPSLMNLASAEATDA----------EVKSEACWVVLNATSCGSDSQIEYLVNEGCIQILGNLLEETSMVMMALEGLERILQVGELEAKRT---------------------DAP--NPYAGLMASANIETLVTHKSATVAKRASRIWQQHFVTCAICMGAFSKHSNDTFFCDECKCNVCKNCDCTVFHLKYQESLWK 651
[Close]
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Match: D0NSN0_PHYIT (Importin subunit alpha, putative n=13 Tax=Peronosporaceae TaxID=4777 RepID=D0NSN0_PHYIT)

HSP 1 Score: 212 bits (540), Expect = 4.360e-60
Identity = 121/222 (54.50%), Postives = 144/222 (64.86%), Query Frame = 1 
Query:    1 KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADPEVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEGLERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQATKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECKCDVCKDCDCHRFHLEFQEELWK 666
            +ACWTLSNIAAGTV+QIQ VLDSG +PSL+ LA+S   D           EV+SEA W VLNATSCGSD QIEYLV +G I++L  LL +++MV MALEGLERILQVG+ EA R                        P  NPYA+L+ +  IE L SHK+  VAKR+ RI + +FV CAIC    SK S  T FC ECKC+VCK CDC  FHL++QE LWK
Sbjct:  438 EACWTLSNIAAGTVDQIQCVLDSGCIPSLMGLAASDATDA----------EVKSEACWVVLNATSCGSDSQIEYLVNQGCIQILGNLLEETSMVMMALEGLERILQVGELEAKRT---------------------DSP--NPYASLMASANIETLVSHKSATVAKRASRIWQQHFVTCAICLGPFSKHSNDTFFCAECKCNVCKHCDCTVFHLKYQESLWK 626
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10285.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHI4_9PHAE4.210e-9870.12B box-type domain-containing protein n=1 Tax=Ectoc... [more]
D8LCJ1_ECTSI2.430e-9769.83Armadillo/beta-catenin-like repeat domain containi... [more]
A0A7S2R949_9STRA1.280e-6657.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A067CNS0_SAPPC9.570e-6456.31Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A485LIM5_9STRA7.230e-6255.41Aste57867_21593 protein n=4 Tax=Aphanomyces TaxID=... [more]
W7TNF0_9STRA2.810e-6155.20Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A421GKL1_9STRA4.820e-6154.50Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
K3WWN8_GLOUD8.290e-6155.41Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0X0G9_9STRA1.300e-6054.50Importin subunit alpha putative n=2 Tax=Albugo Tax... [more]
D0NSN0_PHYIT4.360e-6054.50Importin subunit alpha, putative n=13 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10285contigP-canaliculata_contig10285:5934..11587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.6
Seed ortholog evalue1.1e-83
Seed eggNOG ortholog2880.D8LCJ1
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionarmadillo/beta-catenin-like repeat domain containing protein
Ec32 orthologEc-03_002730.1
Exons7
Model size777
Cds size777
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.9947164-CDS-P-canaliculata_contig10285:5933..60141622815600.9947164-CDS-P-canaliculata_contig10285:5933..6014Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 5934..6014 -
1693494159.8252826-CDS-P-canaliculata_contig10285:5933..60141693494159.8252826-CDS-P-canaliculata_contig10285:5933..6014Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 5934..6014 -
1622815601.0114589-CDS-P-canaliculata_contig10285:7437..75331622815601.0114589-CDS-P-canaliculata_contig10285:7437..7533Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 7438..7533 -
1693494159.834896-CDS-P-canaliculata_contig10285:7437..75331693494159.834896-CDS-P-canaliculata_contig10285:7437..7533Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 7438..7533 -
1622815601.02294-CDS-P-canaliculata_contig10285:7788..78861622815601.02294-CDS-P-canaliculata_contig10285:7788..7886Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 7789..7886 -
1693494159.8430598-CDS-P-canaliculata_contig10285:7788..78861693494159.8430598-CDS-P-canaliculata_contig10285:7788..7886Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 7789..7886 -
1622815601.0328681-CDS-P-canaliculata_contig10285:8284..84681622815601.0328681-CDS-P-canaliculata_contig10285:8284..8468Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 8285..8468 -
1693494159.8512697-CDS-P-canaliculata_contig10285:8284..84681693494159.8512697-CDS-P-canaliculata_contig10285:8284..8468Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 8285..8468 -
1622815601.042935-CDS-P-canaliculata_contig10285:9085..91901622815601.042935-CDS-P-canaliculata_contig10285:9085..9190Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 9086..9190 -
1693494159.8599613-CDS-P-canaliculata_contig10285:9085..91901693494159.8599613-CDS-P-canaliculata_contig10285:9085..9190Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 9086..9190 -
1622815601.0557332-CDS-P-canaliculata_contig10285:9920..100091622815601.0557332-CDS-P-canaliculata_contig10285:9920..10009Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 9921..10009 -
1693494159.8708456-CDS-P-canaliculata_contig10285:9920..100091693494159.8708456-CDS-P-canaliculata_contig10285:9920..10009Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 9921..10009 -
1622815601.0675187-CDS-P-canaliculata_contig10285:11463..115871622815601.0675187-CDS-P-canaliculata_contig10285:11463..11587Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 11464..11587 -
1693494159.8789132-CDS-P-canaliculata_contig10285:11463..115871693494159.8789132-CDS-P-canaliculata_contig10285:11463..11587Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10285 11464..11587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10285.422.1prot_P-canaliculata_contig10285.422.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10285 5934..11587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10285.422.1

>prot_P-canaliculata_contig10285.422.1 ID=prot_P-canaliculata_contig10285.422.1|Name=mRNA_P-canaliculata_contig10285.422.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=259bp
KACWTLSNIAAGTVEQIQTVLDSGALPSLVQLASSQPADPSDPDSGGADP
EVRSEASWAVLNATSCGSDHQIEYLVKEGGIEVLAGLLNQSTMVAMALEG
LERILQVGDKEAHRLLMMGEPPPEGEDQGVGVGEGDQRPRGNPYAALLQA
TKIELLESHKTPAVAKRSQRIRKCYFVRCAICKQFSSKASLKTRFCLECK
CDVCKDCDCHRFHLEFQEELWKEMSEQEANAKANKKSKKQKKKQKAKERS
KASTTCISA
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mRNA from alignment at P-canaliculata_contig10285:5934..11587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10285.422.1 ID=mRNA_P-canaliculata_contig10285.422.1|Name=mRNA_P-canaliculata_contig10285.422.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5654bp|location=Sequence derived from alignment at P-canaliculata_contig10285:5934..11587- (Pelvetia canaliculata dioecious)
AAGGCGTGCTGGACTCTCAGCAACATCGCCGCGGGTACGGTGGAGCAGAT
ACAAACGGTGTTGGACAGCGGTGCGCTTCCGTCGCTCGTGCAGCTCGCGT
CGTCCCAGCCGGCGGACCCCTCAGGTAAAAAAGGGAGGAAACTCTTTGGA
GGGATGTCAAGGTTTTGGCGGGGGTGAGAAGGGAAGGGGGGGAGTCTGGG
AAAAAAGGAAGTCCATCCCCGGGGGAGGGAAGCCTATATCCCCGAGGGGA
GAGAGGAAGCCGATCCCCGAGGTGACGAGGGGCGAGGGAGACAGTTCACC
TAGGAGGGGGGGGAGGGATATTTTATCCCCGGGGAAGGGAGAGAGGGAAG
CTGTCACCCGAGGGGATTACGGAAATTGAGTCTATCTACGGGGGAATAAA
AGGCAAGTTTATTCCCGAGGGGAGGGGCGGCAGGGAGATTGCTGGAGTCC
GGAAAAGGGGGTTGTTGCAGCTATGGCAGATCGCGGCAGCCGGAGAATGC
TCTTTTCATGAGAAACCTTTTCCGGAGGCTTGTAGCTTAGCACGCCGTAC
CCAGGGCGACACTCCACCTGCCGACCTCTCAAATATACTCGGCAAATTAA
TGAGGCATAGCCGGTACTTTCAACATGCCCACTCCATACCAATAATGTGG
GTGTGGGAAGGAGAGGTCCATATTAATTGGTCCACGGTGACCTGCCAAGG
CAGCACCTGCTTGGAACTACCTTGAGATTTACTGGCCCTGTGTCGGCGGA
CTCTCTGCAGTGAACGCCATCGGTACGCAATTGGGTAACCAGATAAAGTT
GGGGCTGACCCGATGGCGTATGGTGGTTTAAATAAATAAATGGACGCCGC
CGCGGAAATTCGCGGCGGAACTCGGGAGGAATCCCGTAATAGGGAGCACC
AGATTCAGCCTGAGTACGGAGATGAGCAGGCTGACGCGGGACGGGACTGC
CGAATCCGTCTCGCGAGACTAAACTCTCAGGCGCGAACGAGGACAGGGAA
ATATTCATTTTCCCTGTTCAGCTGTGACCACGGGCAGCAGGATTGGCAAC
TTTACCCGGTTAATCCTTACTCTTGTTATATGAAATGGCCATACATATTT
CTCAAATAGTTGAGTCATATTTTCGCTGTGCGTGAGAAAACTAAGCGAGT
GCACTATTTTTTGTAATACATTGTTTCTCATTTTTTAATACATTTTTTTT
GTTTTTGTAACACGTTTTTTCATACTTCTTAAATACTAGTACACTTTTTC
TTTTTCTTTTTAACACGTTTTTTCTTAACCTTTAAAACAATTTTTATCAT
TTTTTCAACACATTTTTTCTTTTTCGTACATTTTTTCCTGCTTTTTTTAT
AATTGTTTTCTTACTTTTTCAATACATTTTTTACTACTTTTTAATGCATA
TTTTCTTCTTTTTTTAATACATTTATCTTACTTTTTAACACATTTTTCCT
TATTTTTATTAATACATTTTTTTTGTAATACATTTTTCTCACTTTTTTTT
AACATTTTTTCTTATTTTTTTAAACATTTTTTCCTATTTTTTTAATTCGT
TTTTTTATTTCCTATCTATTTTTTTCAGATCCAGACAGTGGAGGAGCGGA
TCCCGAAGTTCGGAGCGAAGCGAGCTGGGCGGTGCTGAACGCTACGAGCT
GTGGTTCCGATCACCAGGTTTTGTTCTATTTTTTTCCTTGTATTTTTATG
CATGTGTGTATGTGTGTGTAGTATTTATTAAATTGCACATATCCGCGCAA
TCTGACCGTCTTGTCCTTGTCATTCTATGCCACTTGTATTGGTCCTCTCC
AGGGGTATTAACGGATCAATAGTCACGTGTTACGGTGTGTGTTTGTCTGT
TCACACGTGTCTCGTGTCTGTGCGAGTAGGTGTGTCTGTCCATGTGTGCG
GTGCTCGTGTGAGTTGGTGGCAGCAATCGATTGGGCCTCAATTCTTTCTA
ACCTACATTTCGTGGAAACGGACAAAAAGTTAACGGAAAGACAAAAAAAC
TCGGACAAAAAAATAGAAGGCTGGAGAAAAAATAATTGTATCAACATGGT
GTTGCCTTTGTGCAAAGTTTTCTCTCTCTGCGGTACCGTGTCACTTATTA
GTGATTTATTATGTTGTTTTGTCTGTTTTTCTCGTTCTTGTGTAAAAAAG
CCTAAAATAGATATAAAACTAAAAACCCAATACACCGTCCCCATCGCTAA
TAATAGGATAGTTCCCCTCAGCACACTTTTTTTTTTACGCTTTGGTGAAT
TTTTTTCCATCATGTACTGGCGTATGTATGTACCACACGGAGGACATGTG
GACGACGATAACGTTCCTATAGTAAATGCCACCCTCCCCCGCCCCCTCCC
CACCTATCAATAACGCCTCTTTTTGTCATAAAAAATGAAACGTGCAGATT
GAGTATCTCGTTAAAGAGGGGGGAATCGAGGTCCTGGCGGGGTTGCTCAA
CCAGAGCACCATGGTGGCGATGGCCCTAGAGGGGCTCGAACGCATCTTGC
AGGTCTGTACTGATTTTATTCTCTATTTTTACGGCGTTTTCTTAACTTGT
GAAGTATTCAGTATTCATTTTTCGTGTGTTTGTGTGTGTGTGTGCGTGTG
TGCGTGTTGTGTATGTGTTTATTAAGTTGCGCACAACCGCGCAATCCGAC
CCTGTCATTCTACTCATTCTACTTATTCTACTCATTCTATTTCACTTGCA
TTGATCCTCCCAAGAGGGATCAATGATATATTTATTGCGAAAACCTCTGA
TCAGACGCGACAAAGGGGACACACTCTCTCTACTTGTACATATTTTATTT
TAGCCCTGAGTGTCTTCTGTTTGTCTCCCTGCTTCCTGGGGCGTTTTTTG
TTTTCTGTGTTTTACACTCTTTCTCGAGAAACTTTTTTTTTTATGCGTTG
CATAGTATGCTAACAAACAGTCTGAGAGCATTTTGATGGGGGCGAAAAAG
GAATTATTCTCCAGTTTTTTTTGTCCCGAGTAAGCCTTGTCGCCAACGTA
TTATGCCTTTTTCTCCCCTCCACCTCTCCCGAATCAAACATAAAGGTAAA
AAACACTAAGCATCCTTCCCCTTGAACGTCGACACCTTCCAACCAATAAA
AACTGAAATGGCGGCCTAGGTTGGAGATAAGGAGGCGCATCGACTACTGA
TGATGGGAGAACCGCCACCAGAGGGGGAAGATCAAGGCGTGGGTGTGGGC
GAGGGAGACCAACGGCCGAGGGGGAACCCGTACGCGGCGTTACTGCAGGC
GACGAAGATCGAGCTCTTGGAGTCACACAAGACCCCTGCCGTGGCAAAGA
GGTGTGTGTGTATGTGTATGGGTGTATGGGTGTGTATGTAAGTTTATGTG
TGTGTGTGTATGGGTGTGTATGTAAGTTTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATGTGTA
TGTGTGTGTGTATATGTGTATGTGTGTGTGTATATGTGTATGTGTATGTA
TTTAATGAAACTGCACATAACCGCGCAATCCGGCCCTGTCATGCCAGTCA
TTCTATGCCACTCGCATTGATCCGCTCAAGAGGGGTATCAATGGTACTGC
TTACGAAAACCCCTGCGCATGTGCGGTGTGCATATTATCTCTTGTGTTCG
TTGTTTAGTTTGACTTCTTACCTTTCCTGCTGCTGCTGTTTTTGCAAAGA
GCCCAGCGTATACGGAAGTGCTATTTCGTGCGGTGCGCCATCTGCAAGCA
GTTCTCCTCCAAGGCCTCGCTCAAGACGCGCTTCTGCCTCGAGTGCAAGG
TGCTTTGTCATTCCTCCTTCGTCCCCCTCCCCCTGTTCGAAAATGACGGC
TTGACGGATATTGTTTGGGAGAGAGGTGGGAGGTCATTTTGTTTCCAAAA
CCAGAATTTCTGTTTCGTTCTGTGTTGTTTTTTGCTGACACTATTTTCTA
TTGCTCTTTTTCAAAACGGCTACTATTATGTATGTATTTAGCCCCTCCCA
CACCCTTGCCTATTGCCCTTGCCCATTGCTTTGCACCAATAACGCCATAA
AAAGTGTGATGTGTGTAAAGACTGCGATTGCCACCGATTCCACCTGGAGT
TCCAAGAGGAGTTGTGGAAGGAGATGTCGGAGCAAGAAGCGAACGCGAAG
GTAAAGGTAAAGGTTTTATTTATTGTATTAATAGTTCCTTATGTTTGGCT
TTTATTGTTGTATTTTTTATCTTTTTTGTTTTTGTTTTTCGCTTTCATGT
TCTTCTTTGACTCAGTTGTTTTTTGCTTTTGCTTCTTTTTCCTTTTTATT
TTTTTATCCTGCTTTATTTTCTTCCTGACATCCACATACAAAAGTACCTA
GGTGGTGTTTTTCTTCTTTTCGTTCGTACATAGACCCCACCCCTACTAAA
TTCGTTCCGTACTTCATTCTTTTTCGTTCTTGATCCCATATCTAAAGAAG
AAAAAAAAGTTTAATTGATTGTTGTACTTGAACTGTGCATCGTTTATTCC
CTTCGATACTTAGAAGTAGTTATGCTGCTCAAAAATACGATTTACAAAGT
ACTTACTTTTATACCAAACTGTAAAATTATTGATTGCATTTGATACTCAA
ATAGTTTTATTCTGTCAAGTACACTAAAACCGCCTTTTTTTTTCACCATC
GCTTGTTTATGTTTTGTGTGATGACTCTAAATTGTTTGTTTAATTCGAGC
TTGCGTGCTCCTGTTTTGTCATTTTTTAATTTCTCTTCAAGTAGCGTACG
CAAAACATAGGTACGCAGGAGTCCCTTGTTTATTAAAAGAAAATAAATTG
AAGTCTACCCTCTACTTGGTCCCTTAAAACTCGTATTTCATTCAATTTGA
CTTATTTTTATATGGTTGTATTTTTTTTTTAAATCTCTACTTGTATGATT
CTATATAACTTTTCATAGCTTCCGTTCTCATTTACTGTACTTTTTTTATC
TCCTGCGTGTATATCAAGTAGTTTTATGTATCTATTTGGTGACGATAACT
CAAATAGGTTCTTTTTGTGTTTACAGCTTGTTTCGCTGTACTTGGTTTAC
TTTGAGTCCTGTTTTTACAATCGGGCAGTCTCATTACCAAAACATGACTC
TCGATTTAGATATAAAATTATAATTTCTTTTTAGTTTTTTATACTGTAGA
CCACTCTCTTTTTTTTTCAACTACCAATACTGGTTCGAAACAAACCCCAG
GGTTTTCGCTCACGAGGCCATGTTGTATATTCCACCGAAAAAATGCTTGT
TTTCTCAAAAGCTTAAATAAAACCACGTAATTGAACAACTTCAGCGCTGT
TTTACCAGACCTATACGCATAGATTCGCTATACTATCCGAATATTATTTA
TTTTTTTATTCATTTTTTTTATATTCTTAATACGGAGTATCAATTTATAT
TAATTGTACCTACTTCGCACTCACTATTTCCTTGAAGCTCCTTCCTCCCT
TCCCCTCCCTTTCCCCACCCGCCCGACGCCTCTTTGTAAATTAATGTCTC
TCCTCTCTCTCTCTCTCTCGCTGTCTTGGCGACGCTTGTCATTTTATTTA
TTTATTTTTTCATCGCTCTCCAGGCGAACAAGAAGAGCAAGAAGCAAAAA
AAAAAGCAGAAGGCCAAGGAGCGCAGCAAGGCCAGCACCACCTGTATCAG
CGCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10285:5934..11587-

>mRNA_P-canaliculata_contig10285.422.1 ID=mRNA_P-canaliculata_contig10285.422.1|Name=mRNA_P-canaliculata_contig10285.422.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at P-canaliculata_contig10285:5934..11587- (Pelvetia canaliculata dioecious)
AAGGCGTGCTGGACTCTCAGCAACATCGCCGCGGGTACGGTGGAGCAGAT
ACAAACGGTGTTGGACAGCGGTGCGCTTCCGTCGCTCGTGCAGCTCGCGT
CGTCCCAGCCGGCGGACCCCTCAGAAGGCGTGCTGGACTCTCAGCAACAT
CGCCGCGGGTACGGTGGAGCAGATACAAACGGTGTTGGACAGCGGTGCGC
TTCCGTCGCTCGTGCAGCTCGCGTCGTCCCAGCCGGCGGACCCCTCAGAT
CCAGACAGTGGAGGAGCGGATCCCGAAGTTCGGAGCGAAGCGAGCTGGGC
GGTGCTGAACGCTACGAGCTGTGGTTCCGATCACCAGATCCAGACAGTGG
AGGAGCGGATCCCGAAGTTCGGAGCGAAGCGAGCTGGGCGGTGCTGAACG
CTACGAGCTGTGGTTCCGATCACCAGATTGAGTATCTCGTTAAAGAGGGG
GGAATCGAGGTCCTGGCGGGGTTGCTCAACCAGAGCACCATGGTGGCGAT
GGCCCTAGAGGGGCTCGAACGCATCTTGCAGATTGAGTATCTCGTTAAAG
AGGGGGGAATCGAGGTCCTGGCGGGGTTGCTCAACCAGAGCACCATGGTG
GCGATGGCCCTAGAGGGGCTCGAACGCATCTTGCAGGTTGGAGATAAGGA
GGCGCATCGACTACTGATGATGGGAGAACCGCCACCAGAGGGGGAAGATC
AAGGCGTGGGTGTGGGCGAGGGAGACCAACGGCCGAGGGGGAACCCGTAC
GCGGCGTTACTGCAGGCGACGAAGATCGAGCTCTTGGAGTCACACAAGAC
CCCTGCCGTGGCAAAGAGGTGTTGGAGATAAGGAGGCGCATCGACTACTG
ATGATGGGAGAACCGCCACCAGAGGGGGAAGATCAAGGCGTGGGTGTGGG
CGAGGGAGACCAACGGCCGAGGGGGAACCCGTACGCGGCGTTACTGCAGG
CGACGAAGATCGAGCTCTTGGAGTCACACAAGACCCCTGCCGTGGCAAAG
AGGTCCCAGCGTATACGGAAGTGCTATTTCGTGCGGTGCGCCATCTGCAA
GCAGTTCTCCTCCAAGGCCTCGCTCAAGACGCGCTTCTGCCTCGAGTGCA
AGCCCAGCGTATACGGAAGTGCTATTTCGTGCGGTGCGCCATCTGCAAGC
AGTTCTCCTCCAAGGCCTCGCTCAAGACGCGCTTCTGCCTCGAGTGCAAG
TGTGATGTGTGTAAAGACTGCGATTGCCACCGATTCCACCTGGAGTTCCA
AGAGGAGTTGTGGAAGGAGATGTCGGAGCAAGAAGCGAACGCGAAGTGTG
ATGTGTGTAAAGACTGCGATTGCCACCGATTCCACCTGGAGTTCCAAGAG
GAGTTGTGGAAGGAGATGTCGGAGCAAGAAGCGAACGCGAAGGCGAACAA
GAAGAGCAAGAAGCAAAAAAAAAAGCAGAAGGCCAAGGAGCGCAGCAAGG
CCAGCACCACCTGTATCAGCGCGGCGAACAAGAAGAGCAAGAAGCAAAAA
AAAAAGCAGAAGGCCAAGGAGCGCAGCAAGGCCAGCACCACCTGTATCAG
CGCG
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