mRNA_P-canaliculata_contig10282.419.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10282.419.1
Unique NamemRNA_P-canaliculata_contig10282.419.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10282.419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10282contigP-canaliculata_contig10282:9723..10527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size805
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.8527126-CDS-P-canaliculata_contig10282:9722..105261622815600.8527126-CDS-P-canaliculata_contig10282:9722..10526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10282 9723..10526 +
1693494159.7708805-CDS-P-canaliculata_contig10282:9722..105261693494159.7708805-CDS-P-canaliculata_contig10282:9722..10526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10282 9723..10526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10282.419.1prot_P-canaliculata_contig10282.419.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10282 9723..10526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10282.419.1

>prot_P-canaliculata_contig10282.419.1 ID=prot_P-canaliculata_contig10282.419.1|Name=mRNA_P-canaliculata_contig10282.419.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=268bp
PATPKDGNLPQPSFLHFLLITLIIPSGACFPQYSAVFVPSTPNNDSLPQP
SVLQFFFETLTIPSGACCSQYSAVFVPATPKDGILPQPSLLHFPLITLTI
PSGACFPQYSHAAALGSAISLCDVEHPHWGVLCTVLRCFRTCHSERRNLA
VAFHCTRPFHDVDHPIKGMLCVMLRHFGILISKRRSLTTAFVSALSAFLI
VGHLVRCVLCTVLRVSCAGHSTVGLAYYALQSTFFMTSMADYRVLPQRLA
WYVLLLGKSNVLSSTCCS
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mRNA from alignment at P-canaliculata_contig10282:9723..10527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10282.419.1 ID=mRNA_P-canaliculata_contig10282.419.1|Name=mRNA_P-canaliculata_contig10282.419.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=805bp|location=Sequence derived from alignment at P-canaliculata_contig10282:9723..10527+ (Pelvetia canaliculata dioecious)
CCTGCCACTCCGAAAGACGGAAACTTGCCGCAGCCCTCGTTTCTGCACTT
TCTCCTTATTACGTTGATCATTCCGTCCGGTGCGTGCTTCCCACAATACT
CCGCCGTTTTTGTACCGAGTACTCCGAACAACGACTCCTTGCCGCAGCCC
TCGGTTCTGCAATTTTTCTTTGAGACGTTGACCATCCCATCTGGGGCGTG
CTGTTCACAGTACTCCGCCGTTTTCGTACCTGCAACTCCGAAAGACGGAA
TCTTGCCGCAGCCCTCGCTTCTGCACTTTCCCCTTATTACGTTGACCATC
CCGTCCGGTGCGTGCTTCCCACAATACTCCCATGCCGCAGCCCTCGGTTC
TGCAATTTCTCTTTGTGACGTTGAACATCCCCACTGGGGCGTGCTGTGCA
CAGTACTCCGCTGTTTTCGTACTTGCCACTCCGAAAGACGGAATCTTGCT
GTAGCCTTTCATTGTACACGTCCTTTCCACGACGTTGATCATCCCATTAA
GGGCATGCTTTGCGTAATGCTCCGCCATTTTGGTATCTTAATTTCCAAAC
GACGGTCGCTTACTACAGCCTTTGTATCTGCACTTTCTGCTTTTCTTATC
GTTGGTCATCTCGTCCGGTGCGTGCTGTGCACAGTACTCCGTGTTTCTTG
TGCCGGCCACTCCACTGTTGGGCTGGCGTACTATGCGCTGCAGTCCACCT
TTTTCATGACTTCGATGGCGGACTACAGAGTCTTACCACAGCGTTTGGCA
TGGTATGTTTTGCTGCTGGGTAAGTCGAATGTCCTCTCCTCGACGTGTTG
CTCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10282:9723..10527+

>mRNA_P-canaliculata_contig10282.419.1 ID=mRNA_P-canaliculata_contig10282.419.1|Name=mRNA_P-canaliculata_contig10282.419.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at P-canaliculata_contig10282:9723..10527+ (Pelvetia canaliculata dioecious)
CCTGCCACTCCGAAAGACGGAAACTTGCCGCAGCCCTCGTTTCTGCACTT
TCTCCTTATTACGTTGATCATTCCGTCCGGTGCGTGCTTCCCACAATACT
CCGCCGTTTTTGTACCGAGTACTCCGAACAACGACTCCTTGCCGCAGCCC
TCGGTTCTGCAATTTTTCTTTGAGACGTTGACCATCCCATCTGGGGCGTG
CTGTTCACAGTACTCCGCCGTTTTCGTACCTGCAACTCCGAAAGACGGAA
TCTTGCCGCAGCCCTCGCTTCTGCACTTTCCCCTTATTACGTTGACCATC
CCGTCCGGTGCGTGCTTCCCACAATACTCCCATGCCGCAGCCCTCGGTTC
TGCAATTTCTCTTTGTGACGTTGAACATCCCCACTGGGGCGTGCTGTGCA
CAGTACTCCGCTGTTTTCGTACTTGCCACTCCGAAAGACGGAATCTTGCT
GTAGCCTTTCATTGTACACGTCCTTTCCACGACGTTGATCATCCCATTAA
GGGCATGCTTTGCGTAATGCTCCGCCATTTTGGTATCTTAATTTCCAAAC
GACGGTCGCTTACTACAGCCTTTGTATCTGCACTTTCTGCTTTTCTTATC
GTTGGTCATCTCGTCCGGTGCGTGCTGTGCACAGTACTCCGTGTTTCTTG
TGCCGGCCACTCCACTGTTGGGCTGGCGTACTATGCGCTGCAGTCCACCT
TTTTCATGACTTCGATGGCGGACTACAGAGTCTTACCACAGCGTTTGGCA
TGGTATGTTTTGCTGCTGGGTAAGTCGAATGTCCTCTCCTCGACGTGTTG
CTCCCCTGCCACTCCGAAAGACGGAAACTTGCCGCAGCCCTCGTTTCTGC
ACTTTCTCCTTATTACGTTGATCATTCCGTCCGGTGCGTGCTTCCCACAA
TACTCCGCCGTTTTTGTACCGAGTACTCCGAACAACGACTCCTTGCCGCA
GCCCTCGGTTCTGCAATTTTTCTTTGAGACGTTGACCATCCCATCTGGGG
CGTGCTGTTCACAGTACTCCGCCGTTTTCGTACCTGCAACTCCGAAAGAC
GGAATCTTGCCGCAGCCCTCGCTTCTGCACTTTCCCCTTATTACGTTGAC
CATCCCGTCCGGTGCGTGCTTCCCACAATACTCCCATGCCGCAGCCCTCG
GTTCTGCAATTTCTCTTTGTGACGTTGAACATCCCCACTGGGGCGTGCTG
TGCACAGTACTCCGCTGTTTTCGTACTTGCCACTCCGAAAGACGGAATCT
TGCTGTAGCCTTTCATTGTACACGTCCTTTCCACGACGTTGATCATCCCA
TTAAGGGCATGCTTTGCGTAATGCTCCGCCATTTTGGTATCTTAATTTCC
AAACGACGGTCGCTTACTACAGCCTTTGTATCTGCACTTTCTGCTTTTCT
TATCGTTGGTCATCTCGTCCGGTGCGTGCTGTGCACAGTACTCCGTGTTT
CTTGTGCCGGCCACTCCACTGTTGGGCTGGCGTACTATGCGCTGCAGTCC
ACCTTTTTCATGACTTCGATGGCGGACTACAGAGTCTTACCACAGCGTTT
GGCATGGTATGTTTTGCTGCTGGGTAAGTCGAATGTCCTCTCCTCGACGT
GTTGCTCC
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