mRNA_P-canaliculata_contig10275.415.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10275.415.1
Unique NamemRNA_P-canaliculata_contig10275.415.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: D8LS54_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS54_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.120e-15
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTSQTEDILNSILPPR 171
            MIPP+ SLVKY+NP+L+ST  + NR  KG KKK +AP VER +SQTEDILNSILPPR
Sbjct:    1 MIPPHNSLVKYDNPILVST--TGNRGGKGAKKKGQAPTVERPSSQTEDILNSILPPR 55
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A7S2XZP0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZP0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.360e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTSQTEDILNSILPPR 171
            MIPP+ SLVKY+NP+L+ST   T    KG KK+++   VER T+QTEDILNSILPPR
Sbjct:    1 MIPPHNSLVKYDNPILVST---TKDKGKGAKKRSQLAPVERQTTQTEDILNSILPPR 54
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A7S2C1N4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1N4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-10
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTSQTEDILNSILPPR 171
            MIPP+ SLVKY+N +L+ST     ++SK  KK+   P VER ++QTEDILNSILPPR
Sbjct:    1 MIPPHESLVKYDNAILVSTTKEKQKNSK--KKQQSLPPVERQSTQTEDILNSILPPR 55
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A5B8N0L6_9CHLO (Light chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0L6_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 9.790e-10
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLT--SQTEDILNSILPPR 171
            MIPP  SLVKY++PVL+ST     ++ KGG+KK   P VE+ +  +QTEDILNSILPPR
Sbjct:    1 MIPPLISLVKYDSPVLVSTTKDKGKE-KGGRKKKDLPPVEQKSGMTQTEDILNSILPPR 58
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: F0XX65_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX65_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.880e-9
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPA----VERLTSQTEDILNSILPPR 171
            MIPP+ SLVKY+NP+L+ST        KGGK     P+    VER  +QTEDILNSILPPR
Sbjct:    1 MIPPHDSLVKYDNPILVSTTKE-----KGGKXXXTTPSSLPPVERANTQTEDILNSILPPR 56
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A7S2SN15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN15_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.110e-9
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTSQTEDILNSILPPR 171
            M PP+ SLVKY+N +L+ST     + SKG KK  + P VER  +QTEDILNSILPPR
Sbjct:   15 MNPPHDSLVKYDNAILVSTTKEKQKKSKG-KKGQQLPPVERQGTQTEDILNSILPPR 70
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A830HMA8_9CHLO (28 kDa inner dynein arm light chain, axonemal n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HMA8_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.530e-9
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTS--QTEDILNSILPPR 171
            MIPP  SLVKY++PVL+STN    +D KG K K K P VE   +   TEDILNSILPPR
Sbjct:    1 MIPPLQSLVKYDSPVLVSTN----KDKKGAKGKGKLPPVETKPNLTPTEDILNSILPPR 55
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A7S0N8F2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8F2_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.900e-8
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKA---PAVERLT--SQTEDILNSILPPR 171
            MIPP  SLVKY+NPVL+ST     +D +G  KK+K    P VE+    SQTEDILNSILPPR
Sbjct:    1 MIPPLQSLVKYDNPVLVSTT----KDKRGKDKKSKKGPLPPVEQKPGLSQTEDILNSILPPR 58
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A836CKF3_9STRA (Axonemal dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.490e-8
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 PPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTSQTEDILNSILPPR 171
            PP++SLVKY+ PVL+ST        K GK K +   +E+ T+QTEDILNSILPPR
Sbjct:    1 PPHSSLVKYDTPVLVSTT-----QGKKGKGKAQQSGLEKQTTQTEDILNSILPPR 50
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BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Match: A0A2K3D202_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D202_CHLRE)

HSP 1 Score: 56.6 bits (135), Expect = 3.160e-8
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MIPPYTSLVKYNNPVLISTNTSTNRDSKGGK-KKTKAPAVERLT--SQTEDILNSILPPR 171
            MIPP +SLV+Y+NPVL+ST+    + +KG   KK   P VE+    +QTEDILNSILPPR
Sbjct:    1 MIPPLSSLVRYDNPVLVSTSKDKGKGAKGTPGKKGALPPVEQKPGLTQTEDILNSILPPR 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10275.415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS54_ECTSI2.120e-1570.18p28, 28 kDa light chain of axonemal inner dynein a... [more]
A0A7S2XZP0_9STRA2.360e-1263.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2C1N4_9STRA1.830e-1059.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5B8N0L6_9CHLO9.790e-1059.32Light chain of dynein n=1 Tax=Chloropicon primus T... [more]
F0XX65_AURAN1.880e-957.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2SN15_9STRA2.110e-959.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A830HMA8_9CHLO3.530e-961.0228 kDa inner dynein arm light chain, axonemal n=1 ... [more]
A0A7S0N8F2_9CHLO1.900e-859.68Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A836CKF3_9STRA2.490e-856.36Axonemal dynein light chain n=1 Tax=Tribonema minu... [more]
A0A2K3D202_CHLRE3.160e-856.67Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10275contigP-canaliculata_contig10275:10723..10902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog44056.XP_009032194.1
Preferred nameIDA4
KEGG koko:K10410
KEGG Pathwayko05016,map05016
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045504,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG4001@1,KOG4001@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.6031365-CDS-P-canaliculata_contig10275:10722..109021622815600.6031365-CDS-P-canaliculata_contig10275:10722..10902Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10275 10723..10902 +
1693494159.5795608-CDS-P-canaliculata_contig10275:10722..109021693494159.5795608-CDS-P-canaliculata_contig10275:10722..10902Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10275 10723..10902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10275.415.1prot_P-canaliculata_contig10275.415.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10275 10723..10902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10275.415.1

>prot_P-canaliculata_contig10275.415.1 ID=prot_P-canaliculata_contig10275.415.1|Name=mRNA_P-canaliculata_contig10275.415.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=60bp
MIPPYTSLVKYNNPVLISTNTSTNRDSKGGKKKTKAPAVERLTSQTEDIL
NSILPPRCI*
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mRNA from alignment at P-canaliculata_contig10275:10723..10902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10275.415.1 ID=mRNA_P-canaliculata_contig10275.415.1|Name=mRNA_P-canaliculata_contig10275.415.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at P-canaliculata_contig10275:10723..10902+ (Pelvetia canaliculata dioecious)
ATGATACCGCCCTACACCTCATTGGTGAAGTATAACAACCCGGTGCTCAT
AAGCACAAACACCAGCACGAATCGCGACAGCAAGGGAGGGAAGAAGAAAA
CAAAGGCTCCGGCCGTCGAGCGTCTCACCTCCCAGACAGAGGATATCCTC
AACTCCATTCTACCCCCAAGGTGTATCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10275:10723..10902+

>mRNA_P-canaliculata_contig10275.415.1 ID=mRNA_P-canaliculata_contig10275.415.1|Name=mRNA_P-canaliculata_contig10275.415.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at P-canaliculata_contig10275:10723..10902+ (Pelvetia canaliculata dioecious)
ATGATACCGCCCTACACCTCATTGGTGAAGTATAACAACCCGGTGCTCAT
AAGCACAAACACCAGCACGAATCGCGACAGCAAGGGAGGGAAGAAGAAAA
CAAAGGCTCCGGCCGTCGAGCGTCTCACCTCCCAGACAGAGGATATCCTC
AACTCCATTCTACCCCCAAGGTGTATCTGAATGATACCGCCCTACACCTC
ATTGGTGAAGTATAACAACCCGGTGCTCATAAGCACAAACACCAGCACGA
ATCGCGACAGCAAGGGAGGGAAGAAGAAAACAAAGGCTCCGGCCGTCGAG
CGTCTCACCTCCCAGACAGAGGATATCCTCAACTCCATTCTACCCCCAAG
GTGTATCTGA
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