mRNA_P-canaliculata_contig102688.410.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102688.410.1
Unique NamemRNA_P-canaliculata_contig102688.410.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102688.410.1 vs. uniprot
Match: A0A2E0X9K4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0X9K4_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.010e-8
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   13 QRPVAILCNPNTRRTHEHVKALAQLGIDTPHLIAYEDLLRGAPLAESIPRDALLRIESWGDDPGVERLLIASG 231
            QRP AI+ NP  RR      AL   G+    +++YEDLL  +   +S+PR A++R+ES G++  VE LL+ +G
Sbjct:    3 QRPWAIIGNPENRRVAGFQHALKSRGLAPAVVLSYEDLLADSTALQSLPRSAIVRVESPGENLAVEHLLVQAG 75
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BLAST of mRNA_P-canaliculata_contig102688.410.1 vs. uniprot
Match: A0A517P4C4_9PLAN (Uncharacterized protein n=1 Tax=Alienimonas californiensis TaxID=2527989 RepID=A0A517P4C4_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 9.410e-7
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    7 SPQRPVAILCNPNTRRTHEHVKALAQLGIDTPHLIAYEDLLRGAPLAESIPRDALLRIESWGDDPGVERLLIASGGGPNLDLAEDYG 267
            +P R  A++ NP  RR     +ALA  G     L+ + DLL G    E +P DA+LR++S G++  VER L+A+G    L+ AE  G
Sbjct:    9 APPRRWALVGNPENRRVALFQRALADRGAPPALLLPWLDLLSGRRSIEEVPPDAVLRVDSPGENWAVERALLATG----LEAAEAEG 91
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BLAST of mRNA_P-canaliculata_contig102688.410.1 vs. uniprot
Match: UPI0005252894 (STM4014 family protein n=1 Tax=Catenuloplanes japonicus TaxID=33876 RepID=UPI0005252894)

HSP 1 Score: 50.1 bits (118), Expect = 5.350e-5
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   22 VAILCNPNTRRTHEHVKALAQLGIDTPHLIAYEDLLRGAPLAESIPRDALLRIESWGDDPGVERLLIASG 231
            ++++ NP  RR    ++A A  G+  P + A+ D+LRG PL        ++RI+S G+DP V+RLL  +G
Sbjct:    4 LSVIGNPANRRVTMFLRAAAGAGLPPPRVYAWRDVLRGGPLPGP---GEIVRIDSPGEDPEVDRLLRGAG 70
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BLAST of mRNA_P-canaliculata_contig102688.410.1 vs. uniprot
Match: A0A366LRN0_9ACTN (Uncharacterized protein n=1 Tax=Spongiactinospora rosea TaxID=2248750 RepID=A0A366LRN0_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 7.560e-5
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:   25 AILCNPNTRRTHEHVKALAQLGIDTPHLIAYEDLLRGAPLAESIPRDALLRIESWGDDPGVERLLIASG 231
            A++  P  RR      AL   G+  P +IA+ D+L GAP+   IP  A +RI+S G+DP  + LL   G
Sbjct:    5 AVVGTPGDRRVRLFADALRAFGLAEPTVIAWRDVLTGAPI--HIPEGAWVRIDSPGEDPATDALLRGPG 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102688.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E0X9K4_9PLAN3.010e-841.10Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517P4C4_9PLAN9.410e-739.08Uncharacterized protein n=1 Tax=Alienimonas califo... [more]
UPI00052528945.350e-537.14STM4014 family protein n=1 Tax=Catenuloplanes japo... [more]
A0A366LRN0_9ACTN7.560e-539.13Uncharacterized protein n=1 Tax=Spongiactinospora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102688contigP-canaliculata_contig102688:637..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.1646-CDS-P-canaliculata_contig102688:636..9151622815600.1646-CDS-P-canaliculata_contig102688:636..915Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102688 637..915 +
1693494159.25584-CDS-P-canaliculata_contig102688:636..9151693494159.25584-CDS-P-canaliculata_contig102688:636..915Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102688 637..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102688.410.1prot_P-canaliculata_contig102688.410.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102688 637..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102688.410.1

>prot_P-canaliculata_contig102688.410.1 ID=prot_P-canaliculata_contig102688.410.1|Name=mRNA_P-canaliculata_contig102688.410.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=93bp
PDSPQRPVAILCNPNTRRTHEHVKALAQLGIDTPHLIAYEDLLRGAPLAE
SIPRDALLRIESWGDDPGVERLLIASGGGPNLDLAEDYGRYRH
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mRNA from alignment at P-canaliculata_contig102688:637..915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102688.410.1 ID=mRNA_P-canaliculata_contig102688.410.1|Name=mRNA_P-canaliculata_contig102688.410.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at P-canaliculata_contig102688:637..915+ (Pelvetia canaliculata dioecious)
CCGGATTCGCCCCAGCGCCCCGTCGCGATCCTGTGCAACCCGAATACGCG
CCGGACGCACGAGCACGTCAAGGCGCTGGCGCAGCTGGGGATCGACACGC
CCCATCTCATCGCCTACGAGGACCTGCTCCGGGGCGCGCCCCTAGCGGAG
TCGATTCCGAGAGACGCGCTCCTTCGAATAGAGTCATGGGGTGACGATCC
GGGGGTCGAGCGGCTACTGATCGCCTCCGGCGGCGGCCCAAACTTGGACC
TCGCGGAAGACTACGGGAGGTATCGTCAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig102688:637..915+

>mRNA_P-canaliculata_contig102688.410.1 ID=mRNA_P-canaliculata_contig102688.410.1|Name=mRNA_P-canaliculata_contig102688.410.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at P-canaliculata_contig102688:637..915+ (Pelvetia canaliculata dioecious)
CCGGATTCGCCCCAGCGCCCCGTCGCGATCCTGTGCAACCCGAATACGCG
CCGGACGCACGAGCACGTCAAGGCGCTGGCGCAGCTGGGGATCGACACGC
CCCATCTCATCGCCTACGAGGACCTGCTCCGGGGCGCGCCCCTAGCGGAG
TCGATTCCGAGAGACGCGCTCCTTCGAATAGAGTCATGGGGTGACGATCC
GGGGGTCGAGCGGCTACTGATCGCCTCCGGCGGCGGCCCAAACTTGGACC
TCGCGGAAGACTACGGGAGGTATCGTCACCCGGATTCGCCCCAGCGCCCC
GTCGCGATCCTGTGCAACCCGAATACGCGCCGGACGCACGAGCACGTCAA
GGCGCTGGCGCAGCTGGGGATCGACACGCCCCATCTCATCGCCTACGAGG
ACCTGCTCCGGGGCGCGCCCCTAGCGGAGTCGATTCCGAGAGACGCGCTC
CTTCGAATAGAGTCATGGGGTGACGATCCGGGGGTCGAGCGGCTACTGAT
CGCCTCCGGCGGCGGCCCAAACTTGGACCTCGCGGAAGACTACGGGAGGT
ATCGTCAC
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