mRNA_P-canaliculata_contig10267.409.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10267.409.1
Unique NamemRNA_P-canaliculata_contig10267.409.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: D8LDV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDV9_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 3.640e-98
Identity = 148/215 (68.84%), Postives = 177/215 (82.33%), Query Frame = 3 
Query:   36 DDRLSRLRGGRSSDGVIFAEALAETALETGCILAFVAATSYLSDRYASPD-FADVAKLVLWTGTVFLSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQ 677
            +DRL+R+RGGR+SD V+  EAL ETALE+G I+ FV A  YL+ RY S   F++VA+L LWT  VF+SGA TAGP++WLE SQLF ID PI ++WY  L+KPRWNPPNW+FP+MW+PLKILQVFACYEMWDK   L+ RS ++ PVVVY +YKSLGDVWNKVFFERR L MGT VISLY+ +LLAGIK+FFDVSD+AGYLFAPT  WV +ATCLQ
Sbjct:   79 EDRLTRMRGGRTSDTVVLVEALVETALESGLIVGFVGAAEYLAARYLSDTKFSEVARLALWTAAVFVSGAATAGPKKWLEKSQLFNIDVPIGKDWYTNLRKPRWNPPNWVFPIMWIPLKILQVFACYEMWDK---LETRSCVALPVVVYTVYKSLGDVWNKVFFERRRLKMGTVVISLYYLTLLAGIKVFFDVSDRAGYLFAPTAAWVTIATCLQ 290
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A7S0IPT2_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPT2_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 4.150e-30
Identity = 74/204 (36.27%), Postives = 104/204 (50.98%), Query Frame = 3 
Query:  102 AETALETGCILAFV----AATSYLSDRYASPDFADVAKLVLWTGTVFLSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNR 701
            A  A ET  +L F+    A  + +SD  A   F  +A  ++  G+  L G +              K D  +S EWY ++ KP WNPP WLFPVMW+PLK+ Q       W   + L  + F SP ++ + ++ +LGDVWN  FF ++ +  G  VI  ++  L+A   L  +VS  AG L APT  WV VA  L    W+LNR
Sbjct:   49 AAAATETLVLLCFLRTAAALVASVSDARAKFVFGQLAWFLVVQGSSRLQGIVQ-------------KPDETLSPEWYGKVVKPSWNPPAWLFPVMWIPLKLAQTVGAGIAW---RALDHKVFRSPAIIAFVMHLTLGDVWNSQFFVKQRILTGLLVIYSFWGVLVAATALLTNVSPVAGALVAPTVAWVFVAAALNLDIWYLNR 236
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: R1FSF7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FSF7_EMIHU)

HSP 1 Score: 120 bits (302), Expect = 3.980e-27
Identity = 72/201 (35.82%), Postives = 104/201 (51.74%), Query Frame = 3 
Query:  111 ALETGCILAFVAATSYLSDRYASPD----FADVAKLVLWTGTVFLSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNR 701
            A+ET  +LAF+ A + +  R +          +A +V+  G+  L G + +  +              +S EWY +L KP WNPP WLFPVMW+P+K+ Q  A    W   + L  R+F + PVV++ L+ SLGD+WN  FF ++    G  VI  ++ +L+A   L    S  AG L AP   WV VA  L    W+LNR
Sbjct:   55 AMETILLLAFLRAAAEVVSRASGERSKFWIGQLAWVVVVQGSSRLQGYMQSNTQT-------------LSPEWYDKLVKPNWNPPAWLFPVMWIPIKLAQTAAAGITW---RALGHRTFSAAPVVMFLLHLSLGDIWNVQFFLKQRKLTGLLVIYTFWAALIASAVLIGRTSLLAGALVAPGVAWVAVAAALNLDIWYLNR 239
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A7S3PBU0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.330e-27
Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 3 
Query:  237 GAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKVKVLKGRSFLSP--PVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNR 701
            G ++   R+ LE +      +P    WY+ LKKP WNPP WLFP+MW     L +    + W   +VLK      P  P+  +  + +LGD WNKVFF  +    G A+IS+++ +LLA ++LFF V   AG L  P+ GW+ VAT L WS +FLN+
Sbjct:  137 GGLSVATRQLLEPNM-----TPGDPIWYSNLKKPWWNPPGWLFPIMW-----LLIVKPTQAWGIARVLKVSDEKFPWLPLGAFTGHLALGDAWNKVFFGMQCTGRGAALISVFYGALLASMRLFFKVDSLAGKLLLPSFGWISVATSLNWSIFFLNK 283
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A835YIB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.160e-26
Identity = 89/292 (30.48%), Postives = 120/292 (41.10%), Query Frame = 3 
Query:   96 ALAETALETGCILAFVAATSYLSDRY----------ASPD-FADVAKLVLWTGTVFLSGAITAGPRRWLEAS-----------------------QLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKV---KVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYF--------------------------------------------------TSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNRDNP 710
            A  ETALE   ++AFV A S  S R           AS D  A    L+ W   VF SG ++  P R+ E                         Q   +D P+ + WY  L+KPRW PP+++FP+ W+PLK +Q+FA   +WDK+   K L G S L  PV ++ + K++GD WNKV+F R  L +G  V+  Y+                                                    L A +  FF     A YL APT  WV +AT L    W LN+  P
Sbjct:  190 ATVETALEASLLVAFVWAWSAASARVVAAVSPKMDAASADALATGLGLMAWGAVVFGSGFLSVLPGRYREKCSAAASLXXXXXXXXXXXXXXXXVQALSVDYPLQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAYWMLNALSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMLCATLASFFATDRTAFYLLAPTLVWVSLATALTVRVWQLNKGRP 481
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: B8BVL6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVL6_THAPS)

HSP 1 Score: 119 bits (297), Expect = 7.680e-26
Identity = 74/224 (33.04%), Postives = 112/224 (50.00%), Query Frame = 3 
Query:   48 SRLRGGRSSDGV--IFAEALAETALETGCILAFVAATSYLSDRYASPDFADVAKLVLWTGTVF---LSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNRD 704
            S +RGG  SD    +FA+ LA  A+ET  +   +         Y++     V   V++    F   +   +++  ++ L  +++     P   +WY+ L KPRWNPP WLFP+MW+ +     F    +W K+        L+ P +VY  + SLGD WNKVFF  + +  G AVI  +++ L +   LF +V   AG    PT  WV VA  L WS + LNR+
Sbjct:   85 SSIRGGACSDTTPTLFAKVLASAAVETFLMHQLLMFGVKTKSTYSTAIRIAVCFSVIFGSAYFGSLIDNGLSSATKQVLAPNEI-----PGDSDWYSNLAKPRWNPPGWLFPIMWLIISKPTQFVA--VW-KLMATSSEKRLALPFLVYCAHLSLGDAWNKVFFGLQCIGRGMAVIFTFWSVLWSSAYLFREVDSSAGLFLLPTCLWVTVAAALNWSIFLLNRE 300
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A7S3UZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZZ5_HETAK)

HSP 1 Score: 119 bits (297), Expect = 1.010e-25
Identity = 56/128 (43.75%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  315 WYARLKKPRWNPPNWLFPVMWVPLKILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLN 698
            WY  L KP WNPP+WLFPVMW+PLK LQV     +W  V    GR +  P V+ +  Y++LGD+WN +FF++R +  G   I   + SL A    F  V   AG L  PT  W+ VA+ L +S W  N
Sbjct:  181 WYRGLAKPAWNPPDWLFPVMWIPLKTLQVAGAALVWRAV----GRRWAHPAVLAFLGYQALGDLWNALFFDQRRIGFGLVAIYALYASLAASTAAFAQVRPLAGALVLPTNIWLFVASSLNFSIWLRN 304
[Close]
BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A1E7ETG3_9STRA (TspO/MBR-related protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETG3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.790e-25
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 3 
Query:  231 LSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWV----PLKILQVFACYEMWDKVKVLKGRSFLSP--PVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNR 701
            + G+++A  ++ L  S++  +  P    WYA LKKP WNPP W+FP+MW+    P ++  V    +  +        S  S    + VY  + +LGD WNKVFF    +  GT VIS++ + LLA   LF+ +   AGY   PT GWV VAT LQ+S +F N+
Sbjct:   13 VDGSLSAATKQALNPSKV--LGDP---NWYANLKKPTWNPPGWIFPIMWLLISKPTQLCAVSRILKYGNGTGGAVTSSTTSHLLALFVYTTHLALGDAWNKVFFGLECIGRGTVVISIFLSFLLASTYLFYTIDPAAGYYMLPTCGWVSVATALQYSIYFKNK 170
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BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A7S4AEH1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AEH1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.340e-25
Identity = 66/177 (37.29%), Postives = 96/177 (54.24%), Query Frame = 3 
Query:  195 VAKLVLWTGTVFLSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWV----PLKIL---QVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLNRD 704
            +A +++  G+ F+ GAI  G         L          WYA LKKP WNPP WLFP+MW+    P ++    ++F     +D+  V+     +  P+ VY    +LG+ WN VFF    +  GT VI+ ++ +LLA   LF+ + D AGY   PT GWV VAT LQ+S +FLN++
Sbjct:  147 LASMLVVFGSSFV-GAIVGGGLSAATNQALNPNKVQGDPNWYANLKKPTWNPPGWLFPIMWLVVSKPTQLCATSRIFKYGLTFDEGGVVTAVPLV--PLAVYTTMLALGNAWNNVFFGLECIGRGTVVITFFYAALLASAYLFYQIDDLAGYYMLPTCGWVTVATALQYSIYFLNKN 320
[Close]
BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Match: A0A7S4JTL6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JTL6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.970e-25
Identity = 76/238 (31.93%), Postives = 113/238 (47.48%), Query Frame = 3 
Query:   30 VVDDRLSRLRGGR-SSDGVIFAEALAETALETGCILAFVAATSYLSDRYASPDFADVAKL--VLWTGTV-----------FLSGAITAGPRRWLEASQLFKIDSPISEEWYARLKKPRWNPPNWLFPVMWVPL-KILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVFFERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATCLQWSTWFLN 698
            +V   L+  RGG   SD V+F++      LE   +   V     LS       F  +  L  V W   V           F+ G ++A   + L+ +      +P    WY  LK+P W PP W+FP+MW+ + K  Q++A   ++  V +    +FL   ++VY  + SLGD WNKVFF  +    G  VIS ++  L     LF+ + +KAG+L  PT  WV +AT L WS +  N
Sbjct:   65 MVSPPLAHSRGGACDSDAVLFSKIAVGVVLEAAALFGVVLGGKALSSLPELAKFPQIDGLHVVQWASLVIVIFASSLIGSFIDGGLSAASNQVLDPNA-----TPGDPNWYRGLKRPSWEPPGWVFPIMWLIVSKPTQLWAVSRLFKVVDI--DAAFLFRALLVYCTHLSLGDSWNKVFFGFQCPGKGAIVISTFWALLATSAFLFWSIDEKAGHLMLPTCAWVSIATALNWSIYINN 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10267.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDV9_ECTSI3.640e-9868.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0IPT2_9EUKA4.150e-3036.27Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R1FSF7_EMIHU3.980e-2735.82Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3PBU0_9STRA8.330e-2740.13Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A835YIB6_9STRA1.160e-2630.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8BVL6_THAPS7.680e-2633.04Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3UZZ5_HETAK1.010e-2543.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7ETG3_9STRA1.790e-2538.04TspO/MBR-related protein n=1 Tax=Fragilariopsis cy... [more]
A0A7S4AEH1_9STRA2.340e-2537.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4JTL6_9STRA2.970e-2531.93Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10267contigP-canaliculata_contig10267:1896..6999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue4.7e-39
Seed eggNOG ortholog2880.D8LDV9
KEGG koko:K05770
KEGG TC9.A.24
KEGG Pathwayko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166
EggNOG free text desc.benzodiazepine receptor activity
EggNOG OGsCOG3476@1,KOG3797@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTspO/MBR-related protein
Ec32 orthologEc-08_003550.1
Exons7
Model size2258
Cds size348
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.0251338-UTR-P-canaliculata_contig10267:1895..34341622815600.0251338-UTR-P-canaliculata_contig10267:1895..3434Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 1896..3434 -
1693494159.1528804-UTR-P-canaliculata_contig10267:1895..34341693494159.1528804-UTR-P-canaliculata_contig10267:1895..3434Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 1896..3434 -
1622815600.0980158-UTR-P-canaliculata_contig10267:5854..59091622815600.0980158-UTR-P-canaliculata_contig10267:5854..5909Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 5855..5909 -
1693494159.2202156-UTR-P-canaliculata_contig10267:5854..59091693494159.2202156-UTR-P-canaliculata_contig10267:5854..5909Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 5855..5909 -
1622815600.1123998-UTR-P-canaliculata_contig10267:6393..66281622815600.1123998-UTR-P-canaliculata_contig10267:6393..6628Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 6394..6628 -
1693494159.230384-UTR-P-canaliculata_contig10267:6393..66281693494159.230384-UTR-P-canaliculata_contig10267:6393..6628Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 6394..6628 -
1622815600.1270244-UTR-P-canaliculata_contig10267:6918..69991622815600.1270244-UTR-P-canaliculata_contig10267:6918..6999Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 6919..6999 -
1693494159.2410872-UTR-P-canaliculata_contig10267:6918..69991693494159.2410872-UTR-P-canaliculata_contig10267:6918..6999Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10267 6919..6999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.0380762-CDS-P-canaliculata_contig10267:3434..34761622815600.0380762-CDS-P-canaliculata_contig10267:3434..3476Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 3435..3476 -
1693494159.1684523-CDS-P-canaliculata_contig10267:3434..34761693494159.1684523-CDS-P-canaliculata_contig10267:3434..3476Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 3435..3476 -
1622815600.0498433-CDS-P-canaliculata_contig10267:4115..42041622815600.0498433-CDS-P-canaliculata_contig10267:4115..4204Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 4116..4204 -
1693494159.1816523-CDS-P-canaliculata_contig10267:4115..42041693494159.1816523-CDS-P-canaliculata_contig10267:4115..4204Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 4116..4204 -
1622815600.0603383-CDS-P-canaliculata_contig10267:4833..49061622815600.0603383-CDS-P-canaliculata_contig10267:4833..4906Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 4834..4906 -
1693494159.1911235-CDS-P-canaliculata_contig10267:4833..49061693494159.1911235-CDS-P-canaliculata_contig10267:4833..4906Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 4834..4906 -
1622815600.072754-CDS-P-canaliculata_contig10267:5419..55361622815600.072754-CDS-P-canaliculata_contig10267:5419..5536Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 5420..5536 -
1693494159.200583-CDS-P-canaliculata_contig10267:5419..55361693494159.200583-CDS-P-canaliculata_contig10267:5419..5536Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 5420..5536 -
1622815600.086211-CDS-P-canaliculata_contig10267:5827..58541622815600.086211-CDS-P-canaliculata_contig10267:5827..5854Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 5828..5854 -
1693494159.2105107-CDS-P-canaliculata_contig10267:5827..58541693494159.2105107-CDS-P-canaliculata_contig10267:5827..5854Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10267 5828..5854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10267.409.1prot_P-canaliculata_contig10267.409.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10267 3435..5854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10267.409.1

>prot_P-canaliculata_contig10267.409.1 ID=prot_P-canaliculata_contig10267.409.1|Name=mRNA_P-canaliculata_contig10267.409.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=116bp
MWVPLKILQVFACYEMWDKVKVLKGRSFLSPPVVVYALYKSLGDVWNKVF
FERRNLNMGTAVISLYFTSLLAGIKLFFDVSDKAGYLFAPTGGWVLVATC
LQWSTWFLNRDNPPL*
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mRNA from alignment at P-canaliculata_contig10267:1896..6999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10267.409.1 ID=mRNA_P-canaliculata_contig10267.409.1|Name=mRNA_P-canaliculata_contig10267.409.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5104bp|location=Sequence derived from alignment at P-canaliculata_contig10267:1896..6999- (Pelvetia canaliculata dioecious)
AGCGGAGGAGGAGCGGGCTGTCTGAGCGCGTGGTGGACGATCGTCTCTCG
AGGCTACGAGGGGGGCGGTCCTCGGACGGCGGTAAGCGCTCCAAACTGTT
ACGACGGCTCCGTCCTGGAAGAGAGATTCGACGCACGGTACCTGCTCCTA
TCGTATGCGTTATCCGCCAGAATTATCACGGACCGTTCCACTGGCAAAGG
TGTACGTTGGAAATACCTTCACAACCCCCTTTACCATCTTGTACTTTTAG
TCCTAGAACCCCGCGGCTCCCGCCCGGTTGGATGGCACGCAAGACTAAAA
CCCACCCTCTTTTCTTCTTCCGCTTCAAACGTCTCTCCCCCGCGCGCTCC
ATTTACACACACACGGCACAGTAATCTTCGCAGAAGCCCTCGCCGAGACG
GCCCTGGAAACCGGCTGCATCTTGGCCTTCGTGGCAGCGACTTCCTACCT
CTCAGACCGGTATGCCTCCCCTGATTTCGCGGACGTGGCCAAGCTGGTGC
TGTGGACGGGGACGGTGTTCCTGTCGGGGGCGATCACGGCGGGGCCCAGG
CGATGGCTGGAGGCTTCGCAGCTCTTCAAGATCGATAGTCCCATTTCCGA
AGAATGGTGAGCGTCGGTGCATCGTAACGGAAATCGTCTTTCTGTAGCAG
TTTGCGGCCAGGCCAGCCTCGCGAGGTCATATATGAGTCCTGCGCATGCA
TTTTGTTCCATTTCCACGGCCAAGCTGAAACGCCCCCGGGGTGTGTTGAA
CTCCACGGAAGTCTTTGTTTGTGTTGCTGGTTGTGAGGCTTCGACGCCAC
CACCACCTCGCGTATATCCCACGTCTTGCACTTTCCCTGTCATGCGTTCG
ACAAGGACGATCTTCCTTGGAGTGTGCTGTTGTAGCAGCTGTACGCGTAT
AGACGCGTATCCGCCCGCGCCCGTTTTGAGAGGTGGCCAAGGAAGTCGCT
TTTGTGACTCTTGACACAGTGCGGAGTCGTTCGCGTCCCGTGTGAGACTT
GAACAAATGAAAATCATTTCGACGACCTTTCAACTTTTCTTTTACCTCCC
ACCGTTGCCGTTTGTCCTTCGTCGTTCGTTGATACGACAGGTACGCGAGA
CTCAAGAAGCCTAGGTGGAACCCCCCGAACTGGCTGTTCCCCGTCATGTG
GGTACCGCTCAAGATATTGCAGGTGGGGAATATGGGCCGCCACAGTGGGC
GGGAAGTTTGTGCCCGCGTTCTGTTTTTATTTTATTTTGTTTTCATTTTC
CTCGCTCTGTTGTCGTTTCCGATTTTCGTCTAATCGCCAAGTGGAAATAT
TGTAGTGAAGAGGATCCGATTCCATTGCGTAACTAAAACAACTCGCGACC
CGGCCGGGTGCGGATTCCGACATGATGTGAAAGCGGTTACTGTACAGTTC
ACGTCTGCGATGTTTGTGCTTTATTGTGTGGGCGGGTGTGGGTGCTGGGG
GGTGTCGCGTCAGGTGTTCGCCTGCTACGAGATGTGGGATAAGGTGAAGG
TGCTGAAGGGACGAAGTTTCTTGTCGCCCCCCGTGGTGGTGTACGCCCTG
TACAAGTCCCTCGGGGACGTCTGGAACAAGGTCAGCCAAACCGGCGATCG
ATCGGATCCGATCTTATCTGAATTGGCACAGGAACCGTTACCGCCCCTCG
GAATATGTGCGGAAGTGCGTAATGTCTTGTTTCAAGTATCTTATGTTAAT
GAGGTCGACCCGAGCACCCTCTGGAACGGAAGCTGCGGTGAAAACGCTCG
AAAGTATCTCGTTTTGTCTCCAGGTTCGTGTCGATTCGGGTCAGTTTGCA
TCGAGAGAGCTCGGGACTTCACTGTAGAAGAGTTACGGCCTCAAACCTGT
ATACTGGTAGAGTGAAAACGGCCGTATCATGAGGCAAGAGGGAAGAGTCC
AGCGCTCGCCCTAAGCGCCACCTGTGCCCTCCTATCGCCCCCGAGCTAGA
GAGCGTTACACAGCATCCATCGTTGACTCGGTCCAAAAAGCGGCGGGGGA
AATGAATTGTGCGACAACTGGCGCTTGGGGCCGTTGAAATGGGTGGCGTC
TTTTATAGTCTCATCATCCTCATTCATCCTCCTCCTCATTCAGGTGTTTT
TTGAGAGGCGCAATCTGAACATGGGAACCGCGGTCATTTCCCTCTACTTC
ACCTCGCTCTTAGCAGGTGCGTTCATTGCTGCATCCCCGTTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCCCCCCCCCCCCTCG
CCGGGGGAGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNN
NNCCGTGAACGGGGGAGCCGGGGTGCTTGCCCTTCCCTTCCCCTTCCTCT
CAGCGGGTGCGCTCTTTGCCGCACCCCCGTTCCCCCCCCCCCCCCCCCCT
CCTTGCCCCCATGCACCCGGCGGACAGTCACGCGCTTAGAGAGAGGAACG
TCGGGGTGTTTGTGGTGGAGGCAGAGGCGTGCTTGCGAATGAGCTCTAGT
CTCTATTTTGTTACTTTTTGGCGTTGCTTGGGAACCAATCGGAATTTACG
CCGGATGAGCGATCAAATTGCATCGCAACCCTACGCGTTGGACGTATTTC
GTAGGCAGGACGTGAATACCCCCTCACCCCCCCCCCCAGCTTTTTCATTC
GCGCCGACACAAACATTCCAGCTCATGGAACAGCTGGCAGGGTGGTGGTG
ATGTTGGCAATTCCAAGTCTGAAATAGAAGAAAACAAAAAAAAAGCAAAA
AAAACGCTTCTCACTTCATTCCCGCCGGGTGAAACCTTCTGGCAGGCATC
AAGCTATTCTTCGACGTAAGCGACAAAGCGGGTTACTTGTTCGCCCCCAC
AGGGGGTTGGGTCCTGGTCGCTACCTGCCTCCAGGTGAGACTTTCACTCG
TGACCGCTGTCAGCCGGGTACTGCCCTACCGCATCGTATGGCGAACCCCT
CGACAACACTGTTAATAATTATCCACGGTACAAATATTTTGCGGCATCTC
TCGGCCGCCACGTCTCTTTTCTCTTTTCATTATTCGTTTTCGGTTTGGTT
TGTATGGTTGGGGGACTGGCGCGGGGAGCGGGGGTTGTTTCCGGCCTTCA
GTTGCCTGCTCTAGCCACTTTTTATTATTCGTTTCGGTTTTGATTTGGTT
TTTATGAGTGGGGGTGTTTCCTTCTTTAGTGGCCCGTTTTCGGTGTAAAC
GTCGGCACCACGACGTTTTCCGCCTCGCGAGCAATTACGCTTGCCGGGCG
TCCTCGAGGGGTTTTCGCTTCTCAGCAAAGACTGGAAACATTGTGGCCCT
CTCATATTCTTCTTCCGAAGCAGTCCGAGAAATGTGTCTGCGCCCGATGT
TGGGACACCGGAGTGGCGAATTCCTTGGCAGTACTCCTGCTGGGTGGTCA
CATGCCCGTGATATCTCCGTCATTACATGACCTTAGTTGCAACACAATTT
GAAGTACCTTGTTTTCCACCGATTCACGCCCTTTCATGCCTTTTTGAATC
ATATGCCCGTTTTTATTTTCCAGTGGAGCACGTGGTTCCTGAATCGCGAC
AACCCCCCCCTGTAAAAGAACAAACGAAATAGAAGCGAAATGAGTCGCCA
GCGGCACCGGGAAAAACGTCGTCTACTGAACGCCTGCTGGCGAAGGATAG
GCCAAGGCGCTCGAGGGTACATTATTTGTAGAGCAAACATCCTAGAGCTA
CTCTGTCGTGTGGGCCGTTAGGGAAGAGACCCTGGCGACGTTCGAAGAGT
CGGCAGGAGGTTCGTTCCCCGGTGCGAGAGGTATAGCAGTATTGGAATCA
ACCGCTTGCATTGCTTGATTGAGATCGATGCTCTCGCCGGCCGATCGACC
TAGCGCTCGTCCGCGAGAGGATTCTGACTTGGTCAGGGACCGGCGCATTA
AAGTTTGGAGGATCGGGCGGTGCGGTGAAAGTTCGTGGAGGGCGGCGTGT
CTTCTCCGCGTCAGGCCGCGTTTGCTGAGCCACCGTGGCCCATGGGCGCA
CCCGTCTCCGAAGACACAGATTTCTATTGTTGATGGCAAAGACGGCGACT
CTGGATGGCCAGAAGGGTCCGTGTGAGCCACCCAACGGTGCGCGCGTTGC
GAGGCGCGACTCCGCATTGTGGGTTCTGCGCGATAAAGCGTCTCACGTCC
CTCGTAAGAGCGTAGCATGTCACGCGGTAGGGTTTGACTTTTAAAGCCTG
TCCCTGCATGGCTGTGGCTTCCTGCAGCACTCTAGACTATTCAAGAGAAC
TTCTTGTGACAAGCGAGAGAGAAGATACTGCACGTGTCTATTAAAAGAAT
ACATCAGTTATAGTACTGTATGTTACCGGTGTTCCCCCCCAAATCGCAGG
GGAGACGGCATAAGCATGCCCTGCTCGCGTTAACTGTTGCGCCGGGCGGA
AAACGCTCACCATCGAAAGTATGTTGTGGCTGCCCTACGAGGTTTACTGT
TGTGTTACAATTCTAACACATATTAAGAGCTTTCAAGTAACAACCTCCGC
GGGTGGATACGATGGTTCACTCACGGACTTTTCTTTATTTTTTGGAGACA
TCCAAGATCGCCGTACAGAGGCAGTCCGGTGACAGCCTTATAGTACAGTT
GCTTGTCATACCTACACAGCCGTGCTGCTATAATAGCTCAGAGGTCGGTG
TGCAGATCAAGCTACAGATGTAGTCCCATGATACGCCAAAAGTTGACCCT
CTCCCCTACCTCCGCCGGAAACACTAAAATCTTCACACCGTGCGCCCCAA
ACGTCTCACCATGCGTCCATCTACAGTATGAAGGAAATTGTCGAGGAGCA
CGCGTCCCTATCGCGCTTTTATTCTGTACAACAAAGTTATAATTAAATAG
AAAATGAGGTGGATCCACTGGGCTGTTCGTTGAGGTTGGTACACCTGAGC
CTCCTGTGTACGTGGTATTGACCGTAAATCCGGGGAGGACGACTTCTGAA
GTCATCTAGAGAAGGAGTCTACGGTCCACTCGTTGCGGTCAAAACCTGAA
CATTTCATGGTATTGCCACAAATAATCGATAATCCATCCGTTCGGAGTAC
TTGGGGCATGGTCTTCAAATGCCCCCAGGTTGATATGACGGTCGAATGGT
TGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10267:1896..6999-

>mRNA_P-canaliculata_contig10267.409.1 ID=mRNA_P-canaliculata_contig10267.409.1|Name=mRNA_P-canaliculata_contig10267.409.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at P-canaliculata_contig10267:1896..6999- (Pelvetia canaliculata dioecious)
ATGTGGGTACCGCTCAAGATATTGCAGATGTGGGTACCGCTCAAGATATT
GCAGGTGTTCGCCTGCTACGAGATGTGGGATAAGGTGAAGGTGCTGAAGG
GACGAAGTTTCTTGTCGCCCCCCGTGGTGGTGTACGCCCTGTACAAGTCC
CTCGGGGACGTCTGGAACAAGGTGTTCGCCTGCTACGAGATGTGGGATAA
GGTGAAGGTGCTGAAGGGACGAAGTTTCTTGTCGCCCCCCGTGGTGGTGT
ACGCCCTGTACAAGTCCCTCGGGGACGTCTGGAACAAGGTGTTTTTTGAG
AGGCGCAATCTGAACATGGGAACCGCGGTCATTTCCCTCTACTTCACCTC
GCTCTTAGCAGGTGTTTTTTGAGAGGCGCAATCTGAACATGGGAACCGCG
GTCATTTCCCTCTACTTCACCTCGCTCTTAGCAGGCATCAAGCTATTCTT
CGACGTAAGCGACAAAGCGGGTTACTTGTTCGCCCCCACAGGGGGTTGGG
TCCTGGTCGCTACCTGCCTCCAGGCATCAAGCTATTCTTCGACGTAAGCG
ACAAAGCGGGTTACTTGTTCGCCCCCACAGGGGGTTGGGTCCTGGTCGCT
ACCTGCCTCCAGTGGAGCACGTGGTTCCTGAATCGCGACAACCCCCCCCT
GTAATGGAGCACGTGGTTCCTGAATCGCGACAACCCCCCCCTGTAA
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