mRNA_P-canaliculata_contig10264.407.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10264.407.1
Unique NamemRNA_P-canaliculata_contig10264.407.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10264.407.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 7.820e-62
Identity = 125/227 (55.07%), Postives = 159/227 (70.04%), Query Frame = 1 
Query:    7 VTSWSQRSKQRQANLHALVDALEEQKHFLPLAELEPQLWYARFPGTAYHGMIDAQEELVRALSLMSRVAIAVSEDHSKRWREELIELGSHLASLVQLLKVGLEDARNVFSGRGRSEAF--RGGDGSSRA--------------GRQGIHLLDVQAEAIRLDSSVNADFVRYLQAFLDRGTFPALEMESILQVSTATMSVMGLQKALLMLGHAVATVLDRESFPHFYR 639
             TSW  R K+    +  +V AL  QK +LPLAELEPQLWY  FP +AY  M+ AQEEL+RAL+L+++ AIAVSED S  WR EL ELGSHLASLVQLLK+ LEDAR+VF G    +AF  RGG                    G   + +LDVQA+A+RL++ V +DFV ++QAF+DRG FP  E+ESIL++STA ++VMG+Q+ALL LGHAVATV+DRES+  +YR
Sbjct: 1001 TTSWGGREKE-PGGIRKMVCALALQKRYLPLAELEPQLWYEAFPASAYQDMVAAQEELLRALTLLTKSAIAVSEDRSTEWRRELSELGSHLASLVQLLKIALEDARDVFGGGDLPKAFSHRGGXXXXXXXXXXXXXXXXXXXEGEGMLRMLDVQADAMRLNADVQSDFVMFIQAFMDRGAFPVWELESILRISTAVLAVMGVQRALLTLGHAVATVVDRESYGSYYR 1226
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BLAST of mRNA_P-canaliculata_contig10264.407.1 vs. uniprot
Match: A0A6H5K0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.370e-28
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 1 
Query:  250 EELIELGSHLASLVQLLKVGLEDARNVFSGRGRSEAF--RGGDGSSRA----------------GRQG---IHLLDVQAEAIRLDSSVNADFVRYLQAFLDRGTFPALEMESILQVSTATMSVMGLQKALLMLGHAVATVLDRESFPHFYR 639
            EEL ELGS LASL+QLLK+ LEDAR+VF G    +AF  RGG                      G +G   + +LDVQA+A+RL++ V +DFV ++QAF+DRG FP  E+ESIL+++TA ++VMG+Q+ALL LGHAVATV+D E +  + R
Sbjct:  406 EELSELGSRLASLLQLLKIVLEDARDVFGGGDLPKAFSHRGGGXXXXXXXXXXXXXXXXXXXXXGEEGEGVLRMLDVQADAMRLNADVQSDFVMFIQAFMDRGAFPVWELESILRINTAVLAVMGVQRALLTLGHAVATVVDHEFYGSYSR 556
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BLAST of mRNA_P-canaliculata_contig10264.407.1 vs. uniprot
Match: A0A836CDY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.850e-16
Identity = 67/214 (31.31%), Postives = 110/214 (51.40%), Query Frame = 1 
Query:   49 LHALVDALEEQKHFLPLAELEPQLWYARFPGTAYHGMIDAQEELVRALSLMSRVAIAVSEDHSK-RWREELIELGS---HLASLVQLLKVGLEDARNVFSG---------RGRSEAFRGGDGSSRAG-----RQGIHLLDVQAEAIRLDSSVNADFVRYLQAFLDRGTFPALEMESILQVSTATMSVMGLQKALLMLGHAVATVLDRESFPHFY 636
            L  +  ALE+Q  ++  A  EP LW+  F   +Y  +  AQ E++ AL L+ R   + ++  ++  W  E+ +L     H+ASL++L+ + LEDA  +F           RG   +      ++ A      +Q   LL +QAE  RL+ ++++D V Y+         P+L     L+ +T T SVM LQ+ LL LGHAV  +L+RE++  +Y
Sbjct: 1012 LAQVTAALEKQSKYMVQASQEPNLWHRPFHLPSYMAVYQAQREVLAALVLVKRAEQSFAKVCAQDAWSHEIKQLSGITGHMASLLRLVALALEDAEGIFRAPPEPSVSMWRGWKRSHEATAAAAAAAHESRVQQAQRLLQLQAETRRLNQAIDSDMVAYMLRHRVTAARPSLFFA--LRFTTTTFSVMRLQRGLLALGHAVTDLLERENYIFYY 1223
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10264.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD61_ECTSI7.820e-6255.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0H2_9PHAE1.370e-2849.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDY4_9STRA1.850e-1631.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10264contigP-canaliculata_contig10264:1498..4874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1620
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.8830318-UTR-P-canaliculata_contig10264:1497..15371622815599.8830318-UTR-P-canaliculata_contig10264:1497..1537Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10264 1498..1537 +
1693494159.0429702-UTR-P-canaliculata_contig10264:1497..15371693494159.0429702-UTR-P-canaliculata_contig10264:1497..1537Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10264 1498..1537 +
1622815599.8944137-UTR-P-canaliculata_contig10264:2032..21481622815599.8944137-UTR-P-canaliculata_contig10264:2032..2148Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10264 2033..2148 +
1693494159.0529099-UTR-P-canaliculata_contig10264:2032..21481693494159.0529099-UTR-P-canaliculata_contig10264:2032..2148Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10264 2033..2148 +
1622815599.947962-UTR-P-canaliculata_contig10264:3896..48741622815599.947962-UTR-P-canaliculata_contig10264:3896..4874Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10264 3897..4874 +
1693494159.1222093-UTR-P-canaliculata_contig10264:3896..48741693494159.1222093-UTR-P-canaliculata_contig10264:3896..4874Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10264 3897..4874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.9044228-CDS-P-canaliculata_contig10264:2148..21691622815599.9044228-CDS-P-canaliculata_contig10264:2148..2169Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 2149..2169 +
1693494159.071705-CDS-P-canaliculata_contig10264:2148..21691693494159.071705-CDS-P-canaliculata_contig10264:2148..2169Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 2149..2169 +
1622815599.9140515-CDS-P-canaliculata_contig10264:2493..25711622815599.9140515-CDS-P-canaliculata_contig10264:2493..2571Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 2494..2571 +
1693494159.082988-CDS-P-canaliculata_contig10264:2493..25711693494159.082988-CDS-P-canaliculata_contig10264:2493..2571Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 2494..2571 +
1622815599.9276755-CDS-P-canaliculata_contig10264:2878..31141622815599.9276755-CDS-P-canaliculata_contig10264:2878..3114Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 2879..3114 +
1693494159.0926971-CDS-P-canaliculata_contig10264:2878..31141693494159.0926971-CDS-P-canaliculata_contig10264:2878..3114Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 2879..3114 +
1622815599.9383268-CDS-P-canaliculata_contig10264:3745..38961622815599.9383268-CDS-P-canaliculata_contig10264:3745..3896Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 3746..3896 +
1693494159.1025093-CDS-P-canaliculata_contig10264:3745..38961693494159.1025093-CDS-P-canaliculata_contig10264:3745..3896Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10264 3746..3896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10264.407.1prot_P-canaliculata_contig10264.407.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10264 2149..3896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10264.407.1

>prot_P-canaliculata_contig10264.407.1 ID=prot_P-canaliculata_contig10264.407.1|Name=mRNA_P-canaliculata_contig10264.407.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=162bp
MIDAQEELVRALSLMSRVAIAVSEDHSKRWREELIELGSHLASLVQLLKV
GLEDARNVFSGRGRSEAFRGGDGSSRAGRQGIHLLDVQAEAIRLDSSVNA
DFVRYLQAFLDRGTFPALEMESILQVSTATMSVMGLQKALLMLGHAVATV
LDRESFPHFYR*
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mRNA from alignment at P-canaliculata_contig10264:1498..4874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10264.407.1 ID=mRNA_P-canaliculata_contig10264.407.1|Name=mRNA_P-canaliculata_contig10264.407.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3377bp|location=Sequence derived from alignment at P-canaliculata_contig10264:1498..4874+ (Pelvetia canaliculata dioecious)
TCGCGGGTAACGTCGTGGAGCCAGCGCTCGAAGCAACGTCGTGAGTTCTG
AGAATGTGTCGTAGCTGCTGTAGCTGTAGCTGTTGCTGCTGTTGCTGCCG
TGCGCGTTTCAAGCTGAAGCCGCGCGAAGAGGGCTAGGGGTGGAATACGT
TGAGAGCGCTCTCGCGACGATCGCTCGGCATTGCATTACGAGCGATTGCT
TCGAGGGATTTCAACCGGCGGTGAAGGTTTTAAGCTGTCTTTTTTTTTCT
TCTTTTCTGTTCTTTTTCCCGGAAGGTGGTCGCGCCCGATCCATCCCATT
CCGTCCCGGCCCATCCCGTTCCATCCCATGACAGTCCGGTCCAGTCGTTC
AAATCGCTGACGCGCGGTCTGAAGCATCCCGCCGTCATAATCTGCAAGCA
GAATCGTAAGCAAAAACAATTTTGCCATTCCTTCGCTTCCCCGGCGATCG
AGCCCAACAATCCACTTTGACGCCCTCGGGTAAAAACGGATGTTCAACCC
CTCCCCCCGTTGGTTTCGGCCCTCGTACCGCGCAGAAGCCAACTTGCACG
CGTTAGTGGACGCCCTGGAGGAGCAGAAGCACTTCCTGCCCCTGGCGGAG
CTGGAGCCGCAGCTCTGGTACGCCCGGTTCCCCGGCACCGCGTACCACGG
GATGATCGATGCCCAAGAGGAGGTGCACCCAATTATGGCTTACTCTTGAA
AACACCTATTATAGACGAAGGTTGCACCCGAGTATTATTTCAAGAGGGTT
GACGGGAGGCAGCGAAGGAATCGTCAGTTTTACGCGGAAAGCACAGCGGC
TTCTGCCGTGTAGTGTGCTCCACGAGCGCCCCTCAAGAGAGCCTCGCACA
GGTTAAAACAAAAACGAGGGAGGAAAATGTGTCGAACAGGGCCATCTGTT
GTTTCAGAACTCTTTTAGGAGTAGAAGACGAAGCGATATATATATATTTT
CTCAGCTTCCCTCGTGTGCTTCTCGTTTCCCGTGGCCATCACACAGCTGG
TTCGCGCCCTGAGCTTGATGTCACGGGTGGCCATTGCCGTTTCCGAGGAC
CATTCCAAGCGCTGGCGCGAAGAGGTACGACTATATAGCGTACGCAGCTC
GAAGTACCTTTTTGTTGGAGCGCTTTTTCTGAGGTAGATCTATAGTGCTA
ACTCACGCTGTAACGGAAGCGAAAGGCTCCAATCAGCGAGGAAGCGCGTT
ACATATAACAGCACCATTGCAGCTGAACCCATGCCGTAGCGTTGTCGCAT
CGTCGAATACACTATCTTCAGGTTTCCTCTCTTGTATCTCCTTTATCTTC
ACCACCCTCCGCTACCCCCGTCTGCCCTCTCTCCTCCCGGCCTGCGTGGT
GATCGCCCCCCTCTACGCACCCTTCCTGAAGCTGATCGAGCTCGGAAGTC
ATCTTGCGTCCCTCGTGCAATTGCTCAAGGTGGGACTGGAGGACGCGAGG
AATGTGTTCTCTGGCCGCGGCCGCTCGGAGGCGTTTCGCGGTGGGGACGG
CTCGAGCAGGGCTGGCAGGCAAGGCATTCACCTGCTCGATGTTCAGGCGG
AGGCCATCCGGCTCGACTCCAGCGTCAACGCCGACTTCGTCAGGTACCTC
CAGGCGTTTCTGGATAGGTGAGATGGCGGAGGCGTGTCGTCGTTGGGTGC
GTTAATATATATATATATAATTTGCCCCCCGGCGAACCGGGCGTTGGGCC
TAGATATAGATAGACCTGAATGCTCCGGTCAGATGCTGTCGAATGTCGGT
TTCGTCGCATCGAAGCATGATTGTTTTTTAAGAGCACTGACAAAACATGA
GCCTTGTGTCTTGTCGTGGATGCAAGTCATGAACATTATTGATGGAAGAC
ATCGCTGTATTACTGCACGATTTTTTTTGTCTGTTTTCGTGCTGAAAGGG
GTTTGCCTTTCCCACCTGCATCTCAAACGAGCGTATCCTGCTAGGGTTCG
TGTGTGCAGCTGATACGCGGGAGTAAGAAAGGGTGGCGTTGCCGTGACCG
ATTTTCGATTTGTTAACATGACTCCCCCCCCTCCCCCCAACGTTATGTCT
CAGTTGTAGTTATGTACAGTTGCTTGGATGTTTCACGGCAGGAGTCATGC
GTCGGACGAAAGAGGTTGCCTTTCTCTTACCAAGCCGGCGAATGGGCACG
CCACTGCCCCGCCCGCTCCAGCAATGAGTTTCAACACATTGACTGAATCA
TGCAATAACATGGGTGATCGTCTCGGCTTCCCCTCTCCCACCAAACAGGG
GCACTTTCCCGGCTCTGGAGATGGAGTCAATCCTCCAGGTCAGCACGGCA
ACGATGTCCGTCATGGGCCTGCAGAAGGCTCTCTTGATGCTGGGACACGC
CGTCGCGACGGTTCTCGACCGCGAATCTTTCCCGCACTTCTACAGATGAC
GCTGCGGCGGCTGCCAGTTGGTGTGGCATTTGTCGCAAGACCTCGTCAAC
GAGCGGCCACAGCTACGGTAGGCTATCCACTTCGTCGCGAGCGTCAATAA
AAATACCCGTCATGAAGATTTGTCGCAATACCGCCTCGGATCGGCGTCAT
GTACGCGGTAACCAAGGTGCACATCTTCTGGAGGTGTTGAGAGATGCTGC
CAGCATGTCTCCAATGATGTACGCACGTGAGCAGCTAGAGCTCCCGTCGG
TTTTGCTGATATTGTCGGGGAACGTGTGAATAGGGGGATGGTGTGTGTTT
CATCCCCGGCAATTATAAAACGCCTTCACGCTGGAGGGAGTTCGACGTGT
AAAAACAAGGGACATTTGTGTAGTGGTTCTCATGGTTGCCTTTGGCAAAA
TTTTCTTGCCCCCCCCCCCCCTCCCCTACAGCCTCTAGAGACTGGTGATT
GCGGGGTCATCTTTTGTGGGCTATAGGTGATTATGCTTATGTGCTAATGT
GGCGACGCTCTTGAGTTTCGAAACCGAAAATATGTACTATAGTGTTGGAA
ATGTTGCGAACCTCTGAGATCTGGAAGTACAATTTCAACAAAAACTGATT
GATAGTAGAGTTAAAAAGGCAGTCCCAGTTGTCTTGAGAGTTTACTAAGT
GGCATTTCTCTTTCTCCTCCCCAGCGGATATTAGAACGGCGACGTGTCAA
AAGTAAGGTGGCAGTGTTTTCCCCCAACGCGTAAAAAAAGCAGGTGGCAG
ACGTCATGTCGATAACGTGTCCCAGAGAAGGAGCGTAGGTTAGCCCAAGA
TGTGGCTGCCCCAGGTAGAAACCCTCGGTATGGGGGACAGAATGGGTGCC
ACCAGTGACAGTGAGGAGCATGTTGCCCCCCACTCCCATTGGTATACCCC
TGCACATCGTTAAAGGGAGAAGCATGCCTTCATCATTAATATCTACCAGC
TAGGCCGTACGCATCGTCGGACACGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10264:1498..4874+

>mRNA_P-canaliculata_contig10264.407.1 ID=mRNA_P-canaliculata_contig10264.407.1|Name=mRNA_P-canaliculata_contig10264.407.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at P-canaliculata_contig10264:1498..4874+ (Pelvetia canaliculata dioecious)
ATGATCGATGCCCAAGAGGAGATGATCGATGCCCAAGAGGAGCTGGTTCG
CGCCCTGAGCTTGATGTCACGGGTGGCCATTGCCGTTTCCGAGGACCATT
CCAAGCGCTGGCGCGAAGAGCTGGTTCGCGCCCTGAGCTTGATGTCACGG
GTGGCCATTGCCGTTTCCGAGGACCATTCCAAGCGCTGGCGCGAAGAGCT
GATCGAGCTCGGAAGTCATCTTGCGTCCCTCGTGCAATTGCTCAAGGTGG
GACTGGAGGACGCGAGGAATGTGTTCTCTGGCCGCGGCCGCTCGGAGGCG
TTTCGCGGTGGGGACGGCTCGAGCAGGGCTGGCAGGCAAGGCATTCACCT
GCTCGATGTTCAGGCGGAGGCCATCCGGCTCGACTCCAGCGTCAACGCCG
ACTTCGTCAGGTACCTCCAGGCGTTTCTGGATAGCTGATCGAGCTCGGAA
GTCATCTTGCGTCCCTCGTGCAATTGCTCAAGGTGGGACTGGAGGACGCG
AGGAATGTGTTCTCTGGCCGCGGCCGCTCGGAGGCGTTTCGCGGTGGGGA
CGGCTCGAGCAGGGCTGGCAGGCAAGGCATTCACCTGCTCGATGTTCAGG
CGGAGGCCATCCGGCTCGACTCCAGCGTCAACGCCGACTTCGTCAGGTAC
CTCCAGGCGTTTCTGGATAGGGGCACTTTCCCGGCTCTGGAGATGGAGTC
AATCCTCCAGGTCAGCACGGCAACGATGTCCGTCATGGGCCTGCAGAAGG
CTCTCTTGATGCTGGGACACGCCGTCGCGACGGTTCTCGACCGCGAATCT
TTCCCGCACTTCTACAGATGAGGGCACTTTCCCGGCTCTGGAGATGGAGT
CAATCCTCCAGGTCAGCACGGCAACGATGTCCGTCATGGGCCTGCAGAAG
GCTCTCTTGATGCTGGGACACGCCGTCGCGACGGTTCTCGACCGCGAATC
TTTCCCGCACTTCTACAGATGA
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