mRNA_P-canaliculata_contig102618.404.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102618.404.1
Unique NamemRNA_P-canaliculata_contig102618.404.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102618.404.1 vs. uniprot
Match: UPI0011403260 (hypothetical protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI0011403260)

HSP 1 Score: 93.6 bits (231), Expect = 1.290e-19
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 1 
Query:    1 MALHDEILTEIIARNISLKFRAADLRTRE------DPKEKDRYFVGSESYSLNSLTTILPNRSITPDGSEMGDSVQKGQSASFYRLGNGTYQLIASVGHTVELEERFEMLEGSEGDNESIFSPRTQNPNPIQI-IVDTIAQRPYQYYFERQRRLHPDKSVVGWEARLDAYFWPS 501
            MALHD I  EI A  + L FRAADL+T E            RY VG + ++ ++++T L N          G   + GQ+A + R+ +G Y+L++       L+E  E+    E D E   SP  ++  P++      + Q P+Q Y  R+R+L+P ++VVG +ARL +YFWPS
Sbjct:    1 MALHDAIALEIHAGALPLHFRAADLKTTERRVYLSPTATSQRYRVGLDFFAASTISTQLANLC-----EHTGFWTRNGQTARYRRVADGVYELLS-------LDEMHELTTEVEPDCEIPVSPNCRSLKPLEARFACYLEQEPFQIYDRRRRKLYPAEAVVGLDARLSSYFWPS 162
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BLAST of mRNA_P-canaliculata_contig102618.404.1 vs. uniprot
Match: UPI0013CF1653 (hypothetical protein n=3 Tax=Pseudomonas TaxID=286 RepID=UPI0013CF1653)

HSP 1 Score: 86.3 bits (212), Expect = 6.310e-17
Identity = 60/174 (34.48%), Postives = 91/174 (52.30%), Query Frame = 1 
Query:    1 MALHDEILTEIIARNISLKFRAADLRTRE-----DPKEKD-RYFVGSESYSLNSLTTILPNRSITPDGSEMGDSVQKGQSASFYRLGNGTYQLIASVGHTVELEERFEMLEGSEGDNESIFSPRTQNPNPIQI-IVDTIAQRPYQYYFERQRRLHPDKSVVGWEARLDAYFWPS 501
            MALHD I  EI A  +   FRAADL+T E      P + + RY VG + ++ N++ T   N          G   + GQ+A + R+  G Y+L+        L+E  E+    E D E   SP  ++   ++      +  +P+Q Y  R+R+L+P ++VVG EARL++YFWPS
Sbjct:    1 MALHDAIALEIHAGALPRHFRAADLKTTERRVYLSPTDANHRYRVGLDFFAANTINTQPANLC-----EHTGFFTRNGQAARYRRVAKGVYELLG-------LDETQELTAEVEPDCEIPVSPSCRSLTSLEARFACYLEHKPFQIYDRRRRKLYPAEAVVGLEARLNSYFWPS 162
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BLAST of mRNA_P-canaliculata_contig102618.404.1 vs. uniprot
Match: UPI00140774CC (hypothetical protein n=1 Tax=Pseudomonas akapageensis TaxID=2609961 RepID=UPI00140774CC)

HSP 1 Score: 81.6 bits (200), Expect = 3.020e-15
Identity = 54/174 (31.03%), Postives = 92/174 (52.87%), Query Frame = 1 
Query:    1 MALHDEILTEIIARNISLKFRAADLRTRE-------DPKEKDRYFVGSESYSLNSLTTILPNRSITPDGSEMGDSVQKGQSASFYRLGNGTYQLIASVGHTVELEERFEMLEGSEGDNESIFSPRTQNPNPIQIIVDTIAQRPYQYYFERQRRLHPDKSVVGWEARLDAYFWPS 501
            M LHD I+ EI    ++ + R++DL   E       D  +++RY VG + Y+ + + T LPN     +  + G  V+ GQ A + R+  G Y++IA       +EE  E+L+ SE     + +  +Q     + +   + Q P+Q + + +R  HP + VVG++ARL +YFWP+
Sbjct:    1 MTLHDSIILEIQNGKLASELRSSDLLGEERKVLRRIDGADEERYRVGFDFYAESHIATELPN-----NAEDTGYWVKAGQPAKYRRVARGLYRVIA-------IEELEELLDESEDAAAPVLA-WSQVTTLEERLACFLEQEPFQIFDKMRRSHHPQQPVVGFDARLSSYFWPT 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102618.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00114032601.290e-1935.06hypothetical protein n=2 Tax=unclassified Pseudomo... [more]
UPI0013CF16536.310e-1734.48hypothetical protein n=3 Tax=Pseudomonas TaxID=286... [more]
UPI00140774CC3.020e-1531.03hypothetical protein n=1 Tax=Pseudomonas akapageen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102618contigP-canaliculata_contig102618:403..981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.735221-CDS-P-canaliculata_contig102618:402..7601622815599.735221-CDS-P-canaliculata_contig102618:402..760Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102618 403..760 +
1693494158.989696-CDS-P-canaliculata_contig102618:402..7601693494158.989696-CDS-P-canaliculata_contig102618:402..760Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102618 403..760 +
1622815599.7460089-CDS-P-canaliculata_contig102618:838..9811622815599.7460089-CDS-P-canaliculata_contig102618:838..981Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102618 839..981 +
1693494159.0033784-CDS-P-canaliculata_contig102618:838..9811693494159.0033784-CDS-P-canaliculata_contig102618:838..981Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102618 839..981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102618.404.1prot_P-canaliculata_contig102618.404.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102618 403..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102618.404.1

>prot_P-canaliculata_contig102618.404.1 ID=prot_P-canaliculata_contig102618.404.1|Name=mRNA_P-canaliculata_contig102618.404.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=167bp
MALHDEILTEIIARNISLKFRAADLRTREDPKEKDRYFVGSESYSLNSLT
TILPNRSITPDGSEMGDSVQKGQSASFYRLGNGTYQLIASVGHTVELEER
FEMLEGSEGDNESIFSPRTQNPNPIQIIVDTIAQRPYQYYFERQRRLHPD
KSVVGWEARLDAYFWPS
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mRNA from alignment at P-canaliculata_contig102618:403..981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102618.404.1 ID=mRNA_P-canaliculata_contig102618.404.1|Name=mRNA_P-canaliculata_contig102618.404.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at P-canaliculata_contig102618:403..981+ (Pelvetia canaliculata dioecious)
ATGGCGCTGCATGACGAAATATTGACCGAAATCATCGCCAGGAACATCTC
ACTTAAATTTCGAGCTGCAGATTTAAGAACGCGTGAGGATCCAAAAGAGA
AGGACCGATACTTTGTTGGCTCTGAAAGCTACTCTTTGAATTCGTTGACA
ACGATCTTGCCTAACCGAAGCATCACTCCAGACGGAAGTGAGATGGGAGA
TTCGGTTCAAAAAGGTCAATCAGCTTCGTTTTATCGATTAGGCAATGGCA
CATATCAGCTCATTGCCTCTGTGGGCCATACTGTTGAGCTTGAAGAACGG
TTTGAAATGCTCGAGGGTAGTGAAGGGGATAATGAGTCGATATTTAGTCC
ACGTACTCGTGACGAATCAGACGAGATTGTTCAGAGTTCTGTATATGAAG
CTTCAGCTTTTCCGCCTTTAGTGCGATCTGATGAAGAAAATCCAAATCCG
ATTCAAATTATTGTGGACACTATCGCTCAACGCCCTTACCAATATTATTT
CGAAAGACAGAGAAGACTACACCCTGATAAAAGCGTTGTCGGTTGGGAGG
CGCGCCTTGATGCATACTTCTGGCCTTCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102618:403..981+

>mRNA_P-canaliculata_contig102618.404.1 ID=mRNA_P-canaliculata_contig102618.404.1|Name=mRNA_P-canaliculata_contig102618.404.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at P-canaliculata_contig102618:403..981+ (Pelvetia canaliculata dioecious)
ATGGCGCTGCATGACGAAATATTGACCGAAATCATCGCCAGGAACATCTC
ACTTAAATTTCGAGCTGCAGATTTAAGAACGCGTGAGGATCCAAAAGAGA
AGGACCGATACTTTGTTGGCTCTGAAAGCTACTCTTTGAATTCGTTGACA
ACGATCTTGCCTAACCGAAGCATCACTCCAGACGGAAGTGAGATGGGAGA
TTCGGTTCAAAAAGGTCAATCAGCTTCGTTTTATCGATTAGGCAATGGCA
CATATCAGCTCATTGCCTCTGTGGGCCATACTGTTGAGCTTGAAGAACGG
TTTGAAATGCTCGAGGGTAGTGAAGGGGATAATGAGTCGATATTTAGTCC
ACGTACTCATGGCGCTGCATGACGAAATATTGACCGAAATCATCGCCAGG
AACATCTCACTTAAATTTCGAGCTGCAGATTTAAGAACGCGTGAGGATCC
AAAAGAGAAGGACCGATACTTTGTTGGCTCTGAAAGCTACTCTTTGAATT
CGTTGACAACGATCTTGCCTAACCGAAGCATCACTCCAGACGGAAGTGAG
ATGGGAGATTCGGTTCAAAAAGGTCAATCAGCTTCGTTTTATCGATTAGG
CAATGGCACATATCAGCTCATTGCCTCTGTGGGCCATACTGTTGAGCTTG
AAGAACGGTTTGAAATGCTCGAGGGTAGTGAAGGGGATAATGAGTCGATA
TTTAGTCCACGTACTCAAAATCCAAATCCGATTCAAATTATTGTGGACAC
TATCGCTCAACGCCCTTACCAATATTATTTCGAAAGACAGAGAAGACTAC
ACCCTGATAAAAGCGTTGTCGGTTGGGAGGCGCGCCTTGATGCATACTTC
TGGCCTTCGAAAATCCAAATCCGATTCAAATTATTGTGGACACTATCGCT
CAACGCCCTTACCAATATTATTTCGAAAGACAGAGAAGACTACACCCTGA
TAAAAGCGTTGTCGGTTGGGAGGCGCGCCTTGATGCATACTTCTGGCCTT
CG
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