mRNA_P-canaliculata_contig102571.398.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102571.398.1
Unique NamemRNA_P-canaliculata_contig102571.398.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102571.398.1 vs. uniprot
Match: A0A518F164_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518F164_9BACT)

HSP 1 Score: 143 bits (360), Expect = 5.100e-40
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:    7 TFEPAEIQPTPQRPRISKNTKTTAKSSIELEAGLHFDPNDFLDSPVTLKYGLTENIEYFIETAPIRVVDLPDDNESGFGDFAFGIRHRFDDGEGGGPKFAYEAVGKIPTSDNPD 348
            T E A++ PTPQRPRISKNTKTT K S+ELEAGL +DPNDF+D+P T KYG +E  E  +ETAP+R  ++ ++ E+G GD AFG RHRF+  E G P F  E VGK+PT+D+ D
Sbjct:   22 TLEQADLTPTPQRPRISKNTKTTTKDSVELEAGLTWDPNDFVDTPATFKYGFSETTEVIVETAPLRRYEVGNETETGIGDLAFGFRHRFEPTEDGAPTFGMEFVGKLPTNDSSD 135
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BLAST of mRNA_P-canaliculata_contig102571.398.1 vs. uniprot
Match: A0A518EMU7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EMU7_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.030e-18
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:    4 TTFEPAEIQPTPQRPRISKNTKTTAKSSIELEAGLHFDPNDFLDSPVTLKYGLTENIEYFIETAPIRVVDLPDDNESGFGDFAFGIRHRFDDGEGGGPKFAYEAVGKIPTSDNP 345
            TT   +    TPQRP +S +T TT +   ELEAG+  D     DSP+TLKYG+T   E     AP R VDL   +E+G GD  F +RHRF +        A +A+ KIPT+D+P
Sbjct:   21 TTVPGSHAPATPQRPTLSSDTSTTPEGRFELEAGVVRDSTISFDSPLTLKYGVTNQTEISAGVAPYRRVDLGATDENGPGDVVFALRHRFREATEDRASLAVQALVKIPTADDP 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102571.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A518F164_9BACT5.100e-4058.77Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518EMU7_9BACT1.030e-1843.86Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102571contigP-canaliculata_contig102571:210..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.4109309-CDS-P-canaliculata_contig102571:209..5601622815599.4109309-CDS-P-canaliculata_contig102571:209..560Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102571 210..560 +
1693494158.890434-CDS-P-canaliculata_contig102571:209..5601693494158.890434-CDS-P-canaliculata_contig102571:209..560Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102571 210..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102571.398.1prot_P-canaliculata_contig102571.398.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102571 210..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102571.398.1

>prot_P-canaliculata_contig102571.398.1 ID=prot_P-canaliculata_contig102571.398.1|Name=mRNA_P-canaliculata_contig102571.398.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
MTTFEPAEIQPTPQRPRISKNTKTTAKSSIELEAGLHFDPNDFLDSPVTL
KYGLTENIEYFIETAPIRVVDLPDDNESGFGDFAFGIRHRFDDGEGGGPK
FAYEAVGKIPTSDNPDG
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mRNA from alignment at P-canaliculata_contig102571:210..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102571.398.1 ID=mRNA_P-canaliculata_contig102571.398.1|Name=mRNA_P-canaliculata_contig102571.398.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at P-canaliculata_contig102571:210..560+ (Pelvetia canaliculata dioecious)
ATGACGACATTTGAACCCGCCGAGATCCAGCCAACGCCGCAGCGCCCGCG
CATCTCGAAGAATACGAAGACCACCGCCAAGTCATCCATTGAGCTGGAAG
CGGGTCTCCATTTTGACCCGAACGACTTCCTCGATTCCCCGGTGACGCTC
AAGTACGGCCTGACCGAGAACATCGAGTACTTCATCGAGACCGCGCCGAT
CCGCGTGGTCGACCTGCCGGACGACAACGAGTCGGGCTTCGGCGACTTCG
CTTTCGGGATCCGTCACCGATTCGACGACGGCGAAGGCGGCGGACCGAAG
TTCGCCTATGAGGCGGTTGGGAAAATCCCCACGAGCGACAATCCCGACGG
C
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Coding sequence (CDS) from alignment at P-canaliculata_contig102571:210..560+

>mRNA_P-canaliculata_contig102571.398.1 ID=mRNA_P-canaliculata_contig102571.398.1|Name=mRNA_P-canaliculata_contig102571.398.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig102571:210..560+ (Pelvetia canaliculata dioecious)
ATGACGACATTTGAACCCGCCGAGATCCAGCCAACGCCGCAGCGCCCGCG
CATCTCGAAGAATACGAAGACCACCGCCAAGTCATCCATTGAGCTGGAAG
CGGGTCTCCATTTTGACCCGAACGACTTCCTCGATTCCCCGGTGACGCTC
AAGTACGGCCTGACCGAGAACATCGAGTACTTCATCGAGACCGCGCCGAT
CCGCGTGGTCGACCTGCCGGACGACAACGAGTCGGGCTTCGGCGACTTCG
CTTTCGGGATCCGTCACCGATTCGACGACGGCGAAGGCGGCGGACCGAAG
TTCGCCTATGAGGCGGTTGGGAAAATCCCCACGAGCGACAATCCCGACGG
CATGACGACATTTGAACCCGCCGAGATCCAGCCAACGCCGCAGCGCCCGC
GCATCTCGAAGAATACGAAGACCACCGCCAAGTCATCCATTGAGCTGGAA
GCGGGTCTCCATTTTGACCCGAACGACTTCCTCGATTCCCCGGTGACGCT
CAAGTACGGCCTGACCGAGAACATCGAGTACTTCATCGAGACCGCGCCGA
TCCGCGTGGTCGACCTGCCGGACGACAACGAGTCGGGCTTCGGCGACTTC
GCTTTCGGGATCCGTCACCGATTCGACGACGGCGAAGGCGGCGGACCGAA
GTTCGCCTATGAGGCGGTTGGGAAAATCCCCACGAGCGACAATCCCGACG
GC
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