mRNA_P-canaliculata_contig10257.397.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10257.397.1 vs. uniprot
Match: A0A6H5KCM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM1_9PHAE) HSP 1 Score: 296 bits (759), Expect = 1.340e-83 Identity = 266/660 (40.30%), Postives = 334/660 (50.61%), Query Frame = 1
Query: 871 GTARDIYKIRSLLLQGQIAGLRERLKERETDVRELKMLTGGRGQSRLRELSTMLMEARAECDALQLRERALNEELTLSHKEGDTLRGELLSNQKALADLNAYADSLRSRYTAEMVKLEASLAEMEQELTRVXAAHMRERXXXXRREASALTDGQRFRNRTVLLEGEVVKIRARESDLRRENARLLRTYT------------------------ISRDNRRFERDDEADEVEAEEKAAEVISLRQDNAEIKLELKNLQKTG-TASGVSPSEPGIAEELESTKSLGTNTTYVSRKKSWAKSNGDIVKAGEGPFPTTSSARRASEIISVDALVTAVGTFAETVPTLDKGKVIDAVVTANVNSAGGSTVA----------------------------------------------------------SAGLAGTQAAGRAFREVGVARVVEGLRAENARVRKTLRAAERAAEAGDIRACEEATRADRLEAELGRVRMAVRRRVSALKVALVEVEQDAQRATMKNEEFVAQWEEDVNALRQQVVAERKRRESEGEELEGVILDLEDELDDLKARYRHLK-----------SKSGRNI--SIKQKTLPKGTGNTRDGNKSDTPAAR--------EWSSDRAVELSSDD----HWNKAMSMLQHLD 2526
G RD+YKIRSLLLQGQIAGLRERLKERE +V+EL++LTGGRGQS+LREL ML EAR ECDAL+ RE+ L EEL ++ KEGD+LRG+LL+NQKAL+DLN YADSLRSRYT EMVKLEASLAEME+ELT X XXXX +R+R+RT+LL+GEVVK RARE+DLRR NA L+ T + D + +RD+E D + V SLR+DNA ++ EL+ L G A+ VSP G+ T+ G W GD RR + + A G A V+DAVV + S A + + RAFRE GV RVVEGLRAEN RVR+ LR+AERAAE+G+ RA EA RAD LE ELGR RA + E F+ QWE+DV+ALR Q+ AERK R+ + +LE VI DLEDE+DDLK RYR K + SG N S ++T P GTG D + ++ + R E S +R+ ++S + W KAM++LQ+LD
Sbjct: 78 GRKRDMYKIRSLLLQGQIAGLRERLKERELEVKELRVLTGGRGQSKLRELGAMLKEARGECDALRAREKNLAEELAMAQKEGDSLRGDLLANQKALSDLNVYADSLRSRYTDEMVKLEASLAEMERELTXXXXXXXXXXXXXXXXXXXXXXXRERYRSRTILLQGEVVKTRARETDLRRANAALVEKATSALEAVEANVAKNAGKPIAPLYSVTTTDFSQQQRDEEKDGSDV----GVVESLRRDNAALRSELEALSTGGGVAAPVSPPFDGV-----DTRGFG-----------WGVPGGDXXXXXXXXXXXXX--RRGFFLPWLLASAWEGGVVAPRPGVAADAVVVDAVVNGGIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKADVKNDEE--RAFREAGVHRVVEGLRAENTRVRERLRSAERAAESGEDRAKVEAERADALEEELGRXXXXXXXXXXXXXXXXXXXXXXXDRAVAEKEGFMIQWEQDVDALRNQLGAERKARQEDRRDLESVIFDLEDEVDDLKERYRQRKKPVAKKKKRGETSSGDNEQHSRGRETGPSGTG-LMDRSDAENGSRRRRTERETAERSEERSKKISDEKDAAGQWRKAMTLLQYLD 712
BLAST of mRNA_P-canaliculata_contig10257.397.1 vs. uniprot
Match: D8LHE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE2_ECTSI) HSP 1 Score: 211 bits (538), Expect = 1.350e-58 Identity = 122/177 (68.93%), Postives = 145/177 (81.92%), Query Frame = 1
Query: 862 RGNGTARDIYKIRSLLLQGQIAGLRERLKERETDVRELKMLTGGRGQSRLRELSTMLMEARAECDALQLRERALNEELTLSHKEGDTLRGELLSNQKALADLNAYADSLRSRYTAEMVKLEASLAEMEQELTRVXAAHMRERXXXXRREASALTDGQRFRNRTVLLEGEVVKIRARE 1392
+ G RD+YKIRSLLLQGQIAGLRERLKERE +V+EL++LTGGRGQS+LREL ML EAR ECDAL+ RE+ L EEL ++ KEGD+LRG+LL+NQKAL+DLN YADSLRSRYT EMVKLEASLAEME+ELTR X XXXX A+ D +R+R+RT+LL+GEVVK RAR+
Sbjct: 65 QARGRKRDMYKIRSLLLQGQIAGLRERLKERELEVKELRVLTGGRGQSKLRELGAMLKEARGECDALRTREKVLAEELAMAQKEGDSLRGDLLANQKALSDLNVYADSLRSRYTDEMVKLEASLAEMERELTRXXXXXXXXXXXXXXXXXXAVADQERYRSRTILLQGEVVKTRARD 241
BLAST of mRNA_P-canaliculata_contig10257.397.1 vs. uniprot
Match: D8LHE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE1_ECTSI) HSP 1 Score: 158 bits (399), Expect = 9.200e-40 Identity = 110/222 (49.55%), Postives = 140/222 (63.06%), Query Frame = 1
Query: 1927 RAFREVGVARVVEGLRAENARVRKTLRAAERAAEAGDIRACEEATRADRLEAELGRVRMAVRRRVSALKVALVEVEQDAQRATMKNEEFVAQWEEDVNALRQQVVAERKRRESEGEELEGVILDLEDELDDLKARYRHLK-----------SKSGRNISIKQKTLPKGTGNTRDGNKSDTPAAR-------EWSSDRAVELSSDD----HWNKAMSMLQHLD 2526
RAFRE GV RVV+GLRAEN R+R+ LR+AERA+E+G+ RA EA RAD LEAELGRVR V+ RV ALK AL E E+DA RA + E F+ QWEEDV+ALR Q+ AERK RE + +LE VI DLEDE+D LK R+R K + SG N ++ P GTG R + + R E S +R+ ++S + W KAM++LQ+LD
Sbjct: 29 RAFREAGVNRVVQGLRAENTRLRQRLRSAERASESGEDRANVEAERADALEAELGRVRATVKGRVRALKAALEEAEEDADRAVAEKEGFMVQWEEDVDALRNQLGAERKAREEDRRDLESVIFDLEDEVDGLKERFRQRKKPVAKKKKRGEASSGDNEQRSREAGPSGTGLMRRSDAENGSRRRRSERETEERSXERSKKMSDEKDAAGQWRKAMTLLQYLD 250
BLAST of mRNA_P-canaliculata_contig10257.397.1 vs. uniprot
Match: A0A835YWQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ2_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.530e-7 Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 886 IYKIRSLLLQGQIAGLRERLKERETDVRELKMLTGGRGQSRLRELSTMLMEARAECDALQLRER-ALNEELTLSHKEGDTLRGELLSNQKALADLNAYADSLRSRYTAEMVKLEASLAEMEQELTRVXAAHMRERXXXXRREASALTDGQRFRNRTVLLEGEVVKIRARESDLRRENARL 1422
+Y R LLLQ ++ LRE E ++ R+++ L+ D LQ R A EE+ ++ L+ L +++ + DL+ Y ++LR RYT +MV+LEA++A++E EL + A H R R E S + +++R R+ LLE EVVK R + D N RL
Sbjct: 112 LYINRCLLLQAKLVELRE---ENQSVRRKVEQLS----------------------DELQRRPSPAEEEEVGALRQQCSELKSALSASRAEVEDLSRYNEALRKRYTDQMVRLEANVADLEIELRALEADHARGRRTWAATEQSLKAEREKYRVRSTLLEAEVVKARQQLDDATELNERL 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10257.397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10257.397.1 >prot_P-canaliculata_contig10257.397.1 ID=prot_P-canaliculata_contig10257.397.1|Name=mRNA_P-canaliculata_contig10257.397.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=806bp MRRRAQRQQSTCQRYHSYHTALAVAVAAALYSANTSRSHAAAFVWPSLCSback to top mRNA from alignment at P-canaliculata_contig10257:118..9515- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10257.397.1 ID=mRNA_P-canaliculata_contig10257.397.1|Name=mRNA_P-canaliculata_contig10257.397.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9398bp|location=Sequence derived from alignment at P-canaliculata_contig10257:118..9515- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10257:118..9515- >mRNA_P-canaliculata_contig10257.397.1 ID=mRNA_P-canaliculata_contig10257.397.1|Name=mRNA_P-canaliculata_contig10257.397.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4836bp|location=Sequence derived from alignment at P-canaliculata_contig10257:118..9515- (Pelvetia canaliculata dioecious)back to top |