mRNA_P-canaliculata_contig102554.395.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102554.395.1
Unique NamemRNA_P-canaliculata_contig102554.395.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102554.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102554contigP-canaliculata_contig102554:514..949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size436
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.1265016-CDS-P-canaliculata_contig102554:513..8221622815599.1265016-CDS-P-canaliculata_contig102554:513..822Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102554 514..822 +
1693494158.7310538-CDS-P-canaliculata_contig102554:513..8221693494158.7310538-CDS-P-canaliculata_contig102554:513..822Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102554 514..822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.1398997-UTR-P-canaliculata_contig102554:822..9491622815599.1398997-UTR-P-canaliculata_contig102554:822..949Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102554 823..949 +
1693494158.7412562-UTR-P-canaliculata_contig102554:822..9491693494158.7412562-UTR-P-canaliculata_contig102554:822..949Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102554 823..949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102554.395.1prot_P-canaliculata_contig102554.395.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102554 514..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102554.395.1

>prot_P-canaliculata_contig102554.395.1 ID=prot_P-canaliculata_contig102554.395.1|Name=mRNA_P-canaliculata_contig102554.395.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
MLVRTRFRFPRCCSRNHCHFCRHLRLWSAKTSCPPRPWTARWKPYRSWSD
TNAGFPSSSGVCGLGRPDHHQRSRRRTRKCCRCCHPRSGPPRWTRRPRSS
WT*
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mRNA from alignment at P-canaliculata_contig102554:514..949+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102554.395.1 ID=mRNA_P-canaliculata_contig102554.395.1|Name=mRNA_P-canaliculata_contig102554.395.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=436bp|location=Sequence derived from alignment at P-canaliculata_contig102554:514..949+ (Pelvetia canaliculata dioecious)
ATGTTGGTGCGGACTCGTTTCCGCTTCCCACGGTGTTGTTCGCGGAATCA
CTGCCACTTCTGCCGTCACCTCCGGCTCTGGAGCGCAAAAACGAGTTGCC
CTCCCCGCCCCTGGACGGCGCGTTGGAAACCTTACCGGAGTTGGTCTGAC
ACCAATGCCGGCTTTCCTTCGTCTTCTGGGGTGTGCGGTCTAGGTCGTCC
CGACCATCACCAACGCTCACGCCGTCGTACACGAAAATGCTGTCGGTGCT
GTCACCCACGGAGTGGCCCTCCCCGCTGGACCCGTCGTCCTCGGAGCTCG
TGGACGTGATCTTTACAGCAGGACTTGGAATGTGAGTGGGTACATGGGCC
CAAGTTACATGCCGCGTTGCTACAACTCGACCAGATTTGCACAGAATGCG
CATTGCGTCACGGGGGTAATTTGGGGCTGGACCAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102554:514..949+

>mRNA_P-canaliculata_contig102554.395.1 ID=mRNA_P-canaliculata_contig102554.395.1|Name=mRNA_P-canaliculata_contig102554.395.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig102554:514..949+ (Pelvetia canaliculata dioecious)
ATGTTGGTGCGGACTCGTTTCCGCTTCCCACGGTGTTGTTCGCGGAATCA
CTGCCACTTCTGCCGTCACCTCCGGCTCTGGAGCGCAAAAACGAGTTGCC
CTCCCCGCCCCTGGACGGCGCGTTGGAAACCTTACCGGAGTTGGTCTGAC
ACCAATGCCGGCTTTCCTTCGTCTTCTGGGGTGTGCGGTCTAGGTCGTCC
CGACCATCACCAACGCTCACGCCGTCGTACACGAAAATGCTGTCGGTGCT
GTCACCCACGGAGTGGCCCTCCCCGCTGGACCCGTCGTCCTCGGAGCTCG
TGGACGTGAATGTTGGTGCGGACTCGTTTCCGCTTCCCACGGTGTTGTTC
GCGGAATCACTGCCACTTCTGCCGTCACCTCCGGCTCTGGAGCGCAAAAA
CGAGTTGCCCTCCCCGCCCCTGGACGGCGCGTTGGAAACCTTACCGGAGT
TGGTCTGACACCAATGCCGGCTTTCCTTCGTCTTCTGGGGTGTGCGGTCT
AGGTCGTCCCGACCATCACCAACGCTCACGCCGTCGTACACGAAAATGCT
GTCGGTGCTGTCACCCACGGAGTGGCCCTCCCCGCTGGACCCGTCGTCCT
CGGAGCTCGTGGACGTGA
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