mRNA_P-canaliculata_contig10252.390.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10252.390.1
Unique NamemRNA_P-canaliculata_contig10252.390.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10252.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10252contigP-canaliculata_contig10252:877..2933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size963
Cds size960
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10252.390.1prot_P-canaliculata_contig10252.390.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10252 877..2931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.7725656-CDS-P-canaliculata_contig10252:876..9591622815598.7725656-CDS-P-canaliculata_contig10252:876..959Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10252 877..959 +
1693494158.533763-CDS-P-canaliculata_contig10252:876..9591693494158.533763-CDS-P-canaliculata_contig10252:876..959Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10252 877..959 +
1622815598.784694-CDS-P-canaliculata_contig10252:1578..23351622815598.784694-CDS-P-canaliculata_contig10252:1578..2335Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10252 1579..2335 +
1693494158.541864-CDS-P-canaliculata_contig10252:1578..23351693494158.541864-CDS-P-canaliculata_contig10252:1578..2335Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10252 1579..2335 +
1622815598.7990725-CDS-P-canaliculata_contig10252:2811..29311622815598.7990725-CDS-P-canaliculata_contig10252:2811..2931Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10252 2812..2931 +
1693494158.550235-CDS-P-canaliculata_contig10252:2811..29311693494158.550235-CDS-P-canaliculata_contig10252:2811..2931Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10252 2812..2931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10252.390.1

>prot_P-canaliculata_contig10252.390.1 ID=prot_P-canaliculata_contig10252.390.1|Name=mRNA_P-canaliculata_contig10252.390.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp
FATRGATTPAVRGRGSRARGRPRGRAGRASSREPVGARSQQESEAVVKTE
AGGSGQGADIRETAGGEAAVPENASSEKNSSSSSLEDSGTKAGRISSLEA
SPAGREVVGRISEGLKGREGAAAAAAGSDEDSSSGDDGMDVDDDDDDDDD
EEGDDGDSEEDNDDEEDNDDEGDNDDGDNDDEGDNDDEGDNDDEGDNDDE
GDKESEEKEEEERSGVTIGWASAQDDDSDESKETDEARGKAAGARDEAVE
EGLDQAVLNAIVNKIRQGREGDNLYKGLGKGWRKYCTAAKAAVRKKAEDS
PRRPRRGRPPGSVGKKRKLL
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mRNA from alignment at P-canaliculata_contig10252:877..2933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10252.390.1 ID=mRNA_P-canaliculata_contig10252.390.1|Name=mRNA_P-canaliculata_contig10252.390.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2057bp|location=Sequence derived from alignment at P-canaliculata_contig10252:877..2933+ (Pelvetia canaliculata dioecious)
TTTGCCACGAGGGGTGCAACGACTCCGGCAGTGAGGGGCAGGGGTTCCAG
AGCACGTGGAAGGCCGAGAGGTCGGGCGGGCAGGTGTGCGATGGTGGAGC
TGACGGAGGAGGGGGGTGGAGTGTTAAGATTGACAGATGAGACCAGGAGG
CAGTTGACTGTTTGGAGCATGTCGAGCGATGTGTCCGTCGACCGTGTTTA
GAATTACTGCGCCTTTTGATAGGGGATTGAGATTGCGACCATGCGGGAAG
TGCAGGCGTTGACGCCATGAGCCGAGCCGTACGATTGTTCTTGTTTTCCA
TGTATTTGATGCCTCTGCGTCGTAGATGACTTGAGGTATACTATCGTTGA
AGCTACAGGGAGGATTTTGTCCTAACTGGGTTATCAACGGTCATTACTGT
TGTTCCTCGTATCTTGATCTTTTGAAGTCATTTCTCGATTTTGGGATCGC
CCCGGGCGATTCATCATGCTGCCGGACGGGAGATCGCCAAAGCGTCCCTT
CCTACACCCGGCGATGTATCGCTGCACGCTGGTTTCTAATAGGCGATGGC
TGAGCACCGTGTTGTGAACCAACGGACGTGGGTTGTCAGGGTCCTAACAA
AAACAAATTGCTGATACCGAAGACGTGTCGGTGTTTTTTGCTATTCATTT
GTTTTCTTGATTTGCGCGATGCTGCTGTTGTAAAATGACTTTCTGCGCCA
AGGGCATCCTCACGAGAACCGGTTGGCGCCAGGTCGCAGCAGGAATCGGA
GGCTGTCGTAAAAACGGAGGCGGGCGGTAGCGGTCAAGGCGCCGACATTC
GGGAAACAGCAGGCGGTGAAGCCGCCGTACCCGAGAACGCCTCCTCGGAG
AAAAACTCCTCAAGCTCTTCGCTCGAGGATTCCGGAACGAAAGCTGGGAG
GATTTCTTCGCTCGAGGCATCGCCGGCGGGCAGGGAAGTCGTTGGGAGGA
TTTCGGAGGGATTGAAAGGGAGAGAAGGGGCCGCGGCGGCAGCGGCGGGG
TCTGACGAGGACAGCTCTTCGGGGGACGACGGTATGGACGTTGACGATGA
TGATGATGATGATGATGACGAGGAGGGGGATGATGGTGATAGTGAAGAGG
ATAATGACGATGAAGAAGATAATGACGATGAAGGAGATAATGACGATGGA
GATAATGACGATGAAGGAGATAATGACGATGAAGGAGATAATGACGATGA
AGGAGATAATGACGATGAAGGAGATAAGGAAAGTGAGGAAAAGGAAGAAG
AGGAGAGGAGCGGGGTCACGATAGGGTGGGCGTCGGCTCAAGACGACGAC
AGCGACGAAAGCAAGGAGACCGACGAGGCGCGGGGAAAGGCGGCAGGCGC
GCGAGACGAGGCGGTCGAGGAGGGGCTTGACCAGGCGGTGCTTAATGCCA
TCGTCAACAAGATAAGGCAGGGTCGCGAAGGAGATAATCTCTACAAAGGC
CTCGGAAAGGTGACACGTCGAGTTGGGGTGGCGTGCCGAGGCGAGGCGTG
TAGCCATTTTGTGTGTTGATCAAATTACACATAACCGCGCAACCCGGCCC
TGTCATGCTAATCATCCTGAGCTACTATCATATTATTCGTTTTTATCCTC
CCCCAGTGGATTGTTTTCGTGTGTTCTCGCGGTACTTCACTCGCTGTACC
GTATGGACCAATCATAGCTTCGGAGAAACGGTGTTTTCCAGTTCGCACCC
CTCCTTTGTAAGTAAAACCTTTATTTTATTCCTAGACCACGAAAAGTACA
AAAGCGACCGTCACATATCGGTGGCGATATTCGACGCTCCCAGAGCTCGA
GAAGTCCGCTTAGCTTTGCTGCCACGGCGTTCGAACGGCTGTGTACTCTA
CAATACCTGGTAGTGCTATGGTTTGAGAGAGGGGAACGTACCCAGACGGT
CAAACTTTTCCATAACGCCTCCTTCGATTTTCCAGGGGTGGCGAAAGTAC
TGCACTGCCGCGAAGGCAGCCGTTCGAAAGAAGGCGGAAGATTCCCCGCG
CCGTCCCAGGCGAGGCAGACCGCCGGGTAGCGTCGGCAAGAAGCGCAAAC
TACTACT
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Coding sequence (CDS) from alignment at P-canaliculata_contig10252:877..2933+

>mRNA_P-canaliculata_contig10252.390.1 ID=mRNA_P-canaliculata_contig10252.390.1|Name=mRNA_P-canaliculata_contig10252.390.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at P-canaliculata_contig10252:877..2933+ (Pelvetia canaliculata dioecious)
TTTGCCACGAGGGGTGCAACGACTCCGGCAGTGAGGGGCAGGGGTTCCAG
AGCACGTGGAAGGCCGAGAGGTCGGGCGGGCAGTTTGCCACGAGGGGTGC
AACGACTCCGGCAGTGAGGGGCAGGGGTTCCAGAGCACGTGGAAGGCCGA
GAGGTCGGGCGGGCAGGGCATCCTCACGAGAACCGGTTGGCGCCAGGTCG
CAGCAGGAATCGGAGGCTGTCGTAAAAACGGAGGCGGGCGGTAGCGGTCA
AGGCGCCGACATTCGGGAAACAGCAGGCGGTGAAGCCGCCGTACCCGAGA
ACGCCTCCTCGGAGAAAAACTCCTCAAGCTCTTCGCTCGAGGATTCCGGA
ACGAAAGCTGGGAGGATTTCTTCGCTCGAGGCATCGCCGGCGGGCAGGGA
AGTCGTTGGGAGGATTTCGGAGGGATTGAAAGGGAGAGAAGGGGCCGCGG
CGGCAGCGGCGGGGTCTGACGAGGACAGCTCTTCGGGGGACGACGGTATG
GACGTTGACGATGATGATGATGATGATGATGACGAGGAGGGGGATGATGG
TGATAGTGAAGAGGATAATGACGATGAAGAAGATAATGACGATGAAGGAG
ATAATGACGATGGAGATAATGACGATGAAGGAGATAATGACGATGAAGGA
GATAATGACGATGAAGGAGATAATGACGATGAAGGAGATAAGGAAAGTGA
GGAAAAGGAAGAAGAGGAGAGGAGCGGGGTCACGATAGGGTGGGCGTCGG
CTCAAGACGACGACAGCGACGAAAGCAAGGAGACCGACGAGGCGCGGGGA
AAGGCGGCAGGCGCGCGAGACGAGGCGGTCGAGGAGGGGCTTGACCAGGC
GGTGCTTAATGCCATCGTCAACAAGATAAGGCAGGGTCGCGAAGGAGATA
ATCTCTACAAAGGCCTCGGAAAGGGCATCCTCACGAGAACCGGTTGGCGC
CAGGTCGCAGCAGGAATCGGAGGCTGTCGTAAAAACGGAGGCGGGCGGTA
GCGGTCAAGGCGCCGACATTCGGGAAACAGCAGGCGGTGAAGCCGCCGTA
CCCGAGAACGCCTCCTCGGAGAAAAACTCCTCAAGCTCTTCGCTCGAGGA
TTCCGGAACGAAAGCTGGGAGGATTTCTTCGCTCGAGGCATCGCCGGCGG
GCAGGGAAGTCGTTGGGAGGATTTCGGAGGGATTGAAAGGGAGAGAAGGG
GCCGCGGCGGCAGCGGCGGGGTCTGACGAGGACAGCTCTTCGGGGGACGA
CGGTATGGACGTTGACGATGATGATGATGATGATGATGACGAGGAGGGGG
ATGATGGTGATAGTGAAGAGGATAATGACGATGAAGAAGATAATGACGAT
GAAGGAGATAATGACGATGGAGATAATGACGATGAAGGAGATAATGACGA
TGAAGGAGATAATGACGATGAAGGAGATAATGACGATGAAGGAGATAAGG
AAAGTGAGGAAAAGGAAGAAGAGGAGAGGAGCGGGGTCACGATAGGGTGG
GCGTCGGCTCAAGACGACGACAGCGACGAAAGCAAGGAGACCGACGAGGC
GCGGGGAAAGGCGGCAGGCGCGCGAGACGAGGCGGTCGAGGAGGGGCTTG
ACCAGGCGGTGCTTAATGCCATCGTCAACAAGATAAGGCAGGGTCGCGAA
GGAGATAATCTCTACAAAGGCCTCGGAAAGGGGTGGCGAAAGTACTGCAC
TGCCGCGAAGGCAGCCGTTCGAAAGAAGGCGGAAGATTCCCCGCGCCGTC
CCAGGCGAGGCAGACCGCCGGGTAGCGTCGGCAAGAAGCGCAAACTACTA
GGGTGGCGAAAGTACTGCACTGCCGCGAAGGCAGCCGTTCGAAAGAAGGC
GGAAGATTCCCCGCGCCGTCCCAGGCGAGGCAGACCGCCGGGTAGCGTCG
GCAAGAAGCGCAAACTACTA
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