mRNA_P-canaliculata_contig102414.383.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102414.383.1
Unique NamemRNA_P-canaliculata_contig102414.383.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102414.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102414contigP-canaliculata_contig102414:356..967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.1420798-CDS-P-canaliculata_contig102414:355..6821622815598.1420798-CDS-P-canaliculata_contig102414:355..682Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102414 356..682 +
1693494158.0765188-CDS-P-canaliculata_contig102414:355..6821693494158.0765188-CDS-P-canaliculata_contig102414:355..682Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102414 356..682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.152689-UTR-P-canaliculata_contig102414:682..9671622815598.152689-UTR-P-canaliculata_contig102414:682..967Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102414 683..967 +
1693494158.0871363-UTR-P-canaliculata_contig102414:682..9671693494158.0871363-UTR-P-canaliculata_contig102414:682..967Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102414 683..967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102414.383.1prot_P-canaliculata_contig102414.383.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102414 356..682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102414.383.1

>prot_P-canaliculata_contig102414.383.1 ID=prot_P-canaliculata_contig102414.383.1|Name=mRNA_P-canaliculata_contig102414.383.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
EEDVLRFTSVSDSSLLEEDLFTPNCDLSSAELEGQVQRLRQEVRRLSKIN
AAHSPSPSSTPASPGVAVDQRDAGTREPEPASPSINQEPENEDEHGPPLP
AAPVTGPL*
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mRNA from alignment at P-canaliculata_contig102414:356..967+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102414.383.1 ID=mRNA_P-canaliculata_contig102414.383.1|Name=mRNA_P-canaliculata_contig102414.383.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig102414:356..967+ (Pelvetia canaliculata dioecious)
GAGGAAGACGTTCTTCGGTTCACGTCGGTGTCAGACTCATCTCTCCTGGA
GGAGGACCTCTTCACCCCGAACTGCGACCTCTCATCAGCGGAGCTCGAAG
GACAAGTCCAACGCCTACGACAAGAGGTGCGCAGACTCAGCAAGATTAAC
GCCGCCCATTCACCGTCACCATCGTCTACTCCTGCTTCTCCTGGAGTCGC
AGTGGACCAACGTGATGCAGGAACAAGGGAACCTGAACCCGCCTCGCCAA
GCATCAACCAAGAGCCTGAAAATGAGGATGAGCACGGACCGCCATTACCA
GCGGCCCCGGTAACAGGCCCCCTCTGAGGATCAGAAGCGACGGACGACCG
TTTGAAATCACTCGAGCCAGCACAAGACGCAGTCCGAGCAGCAAGGATAC
TGAATATCCTGGCGCACTGCACACACTGTTCCCCACCTACGACCACGACC
CGAGAGCCCTCACCTCCAGCCAACTTCTCCACATTGCCACACAGACAACG
CCATCAATGTTGACAACAGCAGATTCTGCCCACTTGGATGGACAACCCTT
TGACACTCCCCGGGCTTTCGTCTACGCCACCGGAGTCCCAGTGCACAAAG
GGTTCTCGGAGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102414:356..967+

>mRNA_P-canaliculata_contig102414.383.1 ID=mRNA_P-canaliculata_contig102414.383.1|Name=mRNA_P-canaliculata_contig102414.383.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig102414:356..967+ (Pelvetia canaliculata dioecious)
GAGGAAGACGTTCTTCGGTTCACGTCGGTGTCAGACTCATCTCTCCTGGA
GGAGGACCTCTTCACCCCGAACTGCGACCTCTCATCAGCGGAGCTCGAAG
GACAAGTCCAACGCCTACGACAAGAGGTGCGCAGACTCAGCAAGATTAAC
GCCGCCCATTCACCGTCACCATCGTCTACTCCTGCTTCTCCTGGAGTCGC
AGTGGACCAACGTGATGCAGGAACAAGGGAACCTGAACCCGCCTCGCCAA
GCATCAACCAAGAGCCTGAAAATGAGGATGAGCACGGACCGCCATTACCA
GCGGCCCCGGTAACAGGCCCCCTCTGAGAGGAAGACGTTCTTCGGTTCAC
GTCGGTGTCAGACTCATCTCTCCTGGAGGAGGACCTCTTCACCCCGAACT
GCGACCTCTCATCAGCGGAGCTCGAAGGACAAGTCCAACGCCTACGACAA
GAGGTGCGCAGACTCAGCAAGATTAACGCCGCCCATTCACCGTCACCATC
GTCTACTCCTGCTTCTCCTGGAGTCGCAGTGGACCAACGTGATGCAGGAA
CAAGGGAACCTGAACCCGCCTCGCCAAGCATCAACCAAGAGCCTGAAAAT
GAGGATGAGCACGGACCGCCATTACCAGCGGCCCCGGTAACAGGCCCCCT
CTGA
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