mRNA_P-canaliculata_contig102401.382.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI00167B2CBA (hypothetical protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167B2CBA) HSP 1 Score: 382 bits (981), Expect = 5.720e-129 Identity = 185/270 (68.52%), Postives = 220/270 (81.48%), Query Frame = 1
Query: 1 YDDHRETVMSTAPPDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAEDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFKSRF 810
+D +R ++ + P ++A+LT+ N PTASRGDHL+RYR F+RHS+KRR SA K I+FSIFEM GSDIADLKIPFVKP RS KRVT E + LR LL+PGDVFVTRHDDAMSNVFLPGFWPHSALWLG D ++LEAKKDGVLFREL +TLQVDA VIRP+L ++I +AL RA+ H GKLYDF+FDFRT+DRLVCTEV+YRAYHGVGP++FNLI++AGRHCL E LLNQG+GQ WF+VVA+YG+ + L G EAK L SF S F
Sbjct: 181 FDRNRAEILKKSDPYIQAVLTEQNLPTASRGDHLKRYRRFLRHSLKRRQNSALKNIVFSIFEMAGSDIADLKIPFVKPGRSLKRVTPEVIDALRPLLRPGDVFVTRHDDAMSNVFLPGFWPHSALWLGEPDLEVLEAKKDGVLFRELNETLQVDAFTVIRPRLPADEIASALTRAQKHAGKLYDFVFDFRTSDRLVCTEVVYRAYHGVGPINFNLIMEAGRHCLSAEALLNQGVGQEWFDVVAIYGVEDDQLHTGPEAKEMLSNSFDSAF 450
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI000401B43E (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000401B43E) HSP 1 Score: 318 bits (816), Expect = 8.030e-104 Identity = 165/296 (55.74%), Postives = 204/296 (68.92%), Query Frame = 1
Query: 1 YDDHRETVM----STAPPDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLG---------------------AEDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLL-GEEAKTRLRGSFKSRF 810
+D++R +M S A + ILT LN PTASRGDHLRRYR FV S++RR +SA + LF++FE TGSDIA+LKIPFVK +PKRVT + + TL+ L PGDVF+TRHDDAMSN+FLPG+WPH AL++G AED +ILEAKKDGVL R +E+TLQVD+ +V+RP+L DI AL++ SH GKLYDFIF+F T+DRLVCTEVIYRAYHGVGP+ F L QAGR CL E+ LNQ I WF++V LYG+GG N E + RL +F S F
Sbjct: 160 FDENRSVIMAALESEALSPIADILTTLNLPTASRGDHLRRYRRFVNFSLRRRSISASRNTLFALFEATGSDIAELKIPFVKNIGAPKRVTPDVIETLKSQLNPGDVFITRHDDAMSNLFLPGYWPHGALYIGSPETRNERGIEDVSDGYKHSAAEDINILEAKKDGVLLRPIEETLQVDSFVVLRPKLSEADINQALSKGLSHAGKLYDFIFNFATSDRLVCTEVIYRAYHGVGPISFELSTQAGRKCLSAEDFLNQAIANDWFKLVVLYGVGGQNTFEPAETQRERLAATFASTF 455
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI000374D08E (hypothetical protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000374D08E) HSP 1 Score: 291 bits (745), Expect = 2.850e-93 Identity = 150/295 (50.85%), Postives = 194/295 (65.76%), Query Frame = 1
Query: 1 YDDHRETVMSTAPPD----VEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAE---------------------DADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFKSRF 810
+D +RE VM+ V+ IL LN P ASRGDHLRRY FV S++RR +SA + ++F++FE TGSDIA+LKIP VK + KRVT + L ++ L+PGD+F+TRHDDAMSN+FLPGFWPH A ++G D ILEAKKDGVL R L +TL VD+ +V+RP L I+TA+ SH GKLYDFIFDF T+DRLVCTEVIYRA+HGVG + F+L+ + GR CLP E+++NQ I GWF V ++G+ N L +G +A LR SF + F
Sbjct: 158 FDANREAVMAAVSQTDFAVVQEILESLNLPGASRGDHLRRYHRFVNFSLRRRSVSASRNVMFALFEGTGSDIAELKIPLVKNFGARKRVTPDILQAIQDTLRPGDIFITRHDDAMSNLFLPGFWPHGAFYIGTSEQRASRGIADVSDGAKHSGQGDIVILEAKKDGVLLRPLVETLAVDSFVVLRPNLTEAQIDTAITNGLSHAGKLYDFIFDFATSDRLVCTEVIYRAFHGVGDIRFDLVEKTGRKCLPAEDVMNQAISSGWFTPVLIFGVNNNRLTIGTKATDVLRHSFNAVF 452
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A350AQF3_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350AQF3_9BACT) HSP 1 Score: 258 bits (658), Expect = 2.680e-80 Identity = 129/257 (50.19%), Postives = 165/257 (64.20%), Query Frame = 1
Query: 88 RGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGA----------------EDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFKSRF 810
R D L+R + HS+ RR+ SA++K +FS+F+++G IA+LK PFVKP +PKRV L L+PGDV VTRHDDA+SN+FLPG+WPH+A ++G+ ED +E+K+DGVL R +DTLQVDA +V+RP I A+ R SH GKLYDFIFDF DRL CTE++YR+YHGVGPV L AGR CL E+L+NQ + GWFE V +YG+ GN G AK LR SF S F
Sbjct: 187 RDDLLKRRLSYRMHSLLRRNSSAYRKTMFSLFQLSGCSIAELKQPFVKPAGAPKRVDASVRERLEAFLKPGDVIVTRHDDALSNLFLPGYWPHAAFYIGSNGQRGTMGVITDDSVQEDVRFVESKRDGVLLRPADDTLQVDAFVVLRPTFADTQISEAIGRGMSHAGKLYDFIFDFTAADRLACTELVYRSYHGVGPVQLKLEPHAGRVCLSAEDLINQTVTNGWFEPVLVYGLVGNEWTTGAAAKELLRASFASTF 443
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI001A3A4895 (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium R5-34 TaxID=2800420 RepID=UPI001A3A4895) HSP 1 Score: 252 bits (643), Expect = 6.990e-78 Identity = 137/279 (49.10%), Postives = 183/279 (65.59%), Query Frame = 1
Query: 1 YDDHRETVMS-TAPPDVEAILT--KLNTPTAS--RGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFV-----KPPRSP---KRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAED----------AD---------ILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGI 741
Y+ HRE + + A P + ++ K+ P + D+L+R + HS KRRH+S +KK++F +F+++GS +A+L+ PF P RSP KRVT E ++T+ LL+PGDVFVTRHDDA+SN+FLPGFWPH+AL++G+ + AD LEAKKDGVLFR EDTLQVDA +V+RP+L + AL RA SH GKLYDF+FDFR DRL CTEV+YR YHG+GPV F L +GR CL E+L+ Q +G G FE +A YG+
Sbjct: 171 YEVHREDIAAHEADPVIGELVAVLKIEEPFLQYRKRDYLKRKWDYRLHSFKRRHVSGYKKVMFHLFKLSGSAVAELRQPFGVLAADAPQRSPGQLKRVTAEVMATISALLRPGDVFVTRHDDALSNLFLPGFWPHAALYIGSAEERGLLGVPTPADDSRCLELVRFLEAKKDGVLFRAFEDTLQVDAFMVLRPKLAQAECAEALTRAMSHEGKLYDFVFDFRKADRLACTEVVYRGYHGIGPVRFELRQHSGRSCLSAEDLIEQALGSGCFEKIADYGV 449
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A2E8MBK6_9BACT (Uncharacterized protein n=2 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A2E8MBK6_9BACT) HSP 1 Score: 249 bits (637), Expect = 3.490e-77 Identity = 136/269 (50.56%), Postives = 181/269 (67.29%), Query Frame = 1
Query: 58 LTKLNTPTASRGDHLR-RYRGFVR-------HSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLG-----AEDA--------DILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFK 801
L+K+ S +HL R R F+ HS+ RRH S + K++F +F ++GS +A+L+ PF K R KRV + + ++ LL+PGDV VTRHDDAMSN+FLPGFWPH+AL+LG +DA DILEAKKDGVLFR+L +TL VD+ +VIRP L +D+ AL RA SH GKLYDFIFDFR T+RLVCTEV+YRAYH VG ++F L ++GR L E+LL+Q I F+V+A++G+ + LL EA+T LR S +
Sbjct: 168 LSKVAAWLTSEEEHLEHRRRAFLERRVAYRIHSLLRRHTSGYTKVMFHLFRLSGSAVAELRQPFKKNHRVGKRVKPDIIRKIQPLLKPGDVIVTRHDDAMSNLFLPGFWPHAALFLGDSKTRKQDALPEHPMEYDILEAKKDGVLFRQLSETLSVDSFVVIRPNLSNDDLAEALTRACSHEGKLYDFIFDFRKTERLVCTEVVYRAYHSVGEIEFQLTKRSGRLALSAEDLLDQAITNNNFKVIAIFGVQNSGLLYDGEARTCLRESLQ 436
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI00190797CC (Uncharacterized protein n=2 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI00190797CC) HSP 1 Score: 248 bits (634), Expect = 1.130e-76 Identity = 132/262 (50.38%), Postives = 170/262 (64.89%), Query Frame = 1
Query: 40 PDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAEDAD----------ILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGS 795
P VE +L + R D LRR + +S RRH SAWK+++F +F+ +GS IA+L+ P +KP +PKR+T E S L ++PGDVFVTRHDDAMSN+FLPGFWPH+A +LG D LEAKKDGVLFRE+ +TL VD+ +V+RP L+ + L RA SH GK YDF+FDFRT D L CTEV+YR HG+GP+ F L GR CLP EE+++Q + G FEVVA G+GG +L G A+ GS
Sbjct: 181 PVVELLLAEEMWIEHRRRDLLRRAVSYRWYSFLRRHRSAWKQVMFGLFKASGSAIAELRQPGIKPAGAPKRMTDEMRSMLLARVRPGDVFVTRHDDAMSNLFLPGFWPHAAFYLGEGDGSSVWGKSGGRWFLEAKKDGVLFREIAETLSVDSCVVLRPPLNDQERMEGLQRATSHAGKPYDFLFDFRTADCLACTEVVYRGLHGIGPIRFTLREVGGRLCLPAEEMISQALECG-FEVVATAGLGGAKVLFGTAAEIAFHGS 441
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A2E3HDU1_9BACT (Uncharacterized protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3HDU1_9BACT) HSP 1 Score: 249 bits (635), Expect = 1.600e-76 Identity = 128/281 (45.55%), Postives = 182/281 (64.77%), Query Frame = 1
Query: 1 YDDHRETV---MSTAPPDVEAILTKLNTP--TASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAE--------------DADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRL 786
Y+ HRE + + A D+ A P SR + ++R + H+ K R ++ +K+++F +F ++GS IAD+K PF + RVT E T +LQPGD VTRHDDAMSN+FLPGFWPH++L LG +A++LEAKKDGVLFR L++TL VDA +V+RP+L+ + ++ AL RA SH GKLYDF+FDFR D+LVC+EV+YRAYHGVGPV F L+ ++G+ L E+LL Q + G+FE++ YG+G N +L G A+ ++
Sbjct: 163 YNTHREEIAEALRKADMDLVAEWLHAEEPFFEKSRREFIKRKIRYRLHAFKLRQIAGYKRVMFHLFRLSGSAIADMKQPFTRRAHEEHRVTPELRCTTEKMLQPGDFLVTRHDDAMSNLFLPGFWPHASLSLGNSAQRSDLDLPPIHHPEANVLEAKKDGVLFRHLDETLSVDAFVVLRPRLENHFLKEALTRAISHEGKLYDFVFDFRKADKLVCSEVVYRAYHGVGPVSFELVKRSGKLVLSAEDLLRQALASGFFEIILCYGVGDNQMLQGRAAEAKI 443
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A7C5LS04_9PROT (Uncharacterized protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5LS04_9PROT) HSP 1 Score: 244 bits (622), Expect = 1.200e-74 Identity = 136/289 (47.06%), Postives = 174/289 (60.21%), Query Frame = 1
Query: 1 YDDHRETVMSTAPPDVEAILTKLNTP---TASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAE--------------------DADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSF 798
Y D + T P A + ++ P T R H +R F ++RR + +F +FE GSDIA+LK P VKP +PKRV E + L L PGDVFVTRHDDA+SNVFLPGFWPH+AL++G + + LE+KKDGVLFR +DTLQVD +++RP+L ++TAL RA SH GKLYDF+FDF T+DRLVCTE+IYR YH + F L +AGR CL E+ LNQ +G WFEVVA++G+GG+ L GE A L SF
Sbjct: 173 YKDEIYAALDTPPYSEIADMLRVEEPYFQTRLRA-HFKRKARFNLFRLRRRRQVVVHQAIFFLFEAAGSDIAELKQPLVKPRGAPKRVNDEVRAQLLELALPGDVFVTRHDDALSNVFLPGFWPHAALYIGTDMDRAALGVAKSRPEYQSEAGPVEFLESKKDGVLFRPAKDTLQVDNCVILRPKLSKPVVQTALNRALSHAGKLYDFVFDFTTSDRLVCTELIYRTYHDPKNMPFILSEKAGRLCLSAEDFLNQALGHDWFEVVAVFGVGGDTLYQGEAALQTLLKSF 460
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A3D4EXE3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3D4EXE3_9BACT) HSP 1 Score: 236 bits (601), Expect = 3.530e-74 Identity = 113/239 (47.28%), Postives = 163/239 (68.20%), Query Frame = 1
Query: 127 HSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGA--------------EDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFK 801
+S+ RR S + K++F +F +TGS IAD+K PFVK KRVT E + +R LQPGD+F+TRHDDAMSN+FLPGFWPH+AL++G + A +LEAKKDGV R++E+TL VD+ +++RP++ +++ AL +A +H GK YDF FDFR +RL CTEVIYRA+HG+G D LI Q+G LP EEL++QG+ +G +V ++G+ G+ + +G +A+ L + K
Sbjct: 14 YSLSRRTSSGYTKVMFHLFRLTGSAIADMKQPFVKSSGKGKRVTKEIIEEIRSKLQPGDIFITRHDDAMSNLFLPGFWPHAALYMGPLSDRDDLGLLAYGDQSAHVLEAKKDGVKLRQIEETLSVDSFVILRPKVSAAELQQALQKAITHEGKHYDFTFDFRKAERLCCTEVIYRAFHGIGRWDLRLIKQSGHLALPAEELIHQGLQKGLIDVAMIFGVNGDTVEIGPKARDLLLSTLK 252 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102401.382.1 >prot_P-canaliculata_contig102401.382.1 ID=prot_P-canaliculata_contig102401.382.1|Name=mRNA_P-canaliculata_contig102401.382.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=263bp MSTAPPDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFback to top mRNA from alignment at P-canaliculata_contig102401:2..814+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102401.382.1 ID=mRNA_P-canaliculata_contig102401.382.1|Name=mRNA_P-canaliculata_contig102401.382.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at P-canaliculata_contig102401:2..814+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102401:2..814+ >mRNA_P-canaliculata_contig102401.382.1 ID=mRNA_P-canaliculata_contig102401.382.1|Name=mRNA_P-canaliculata_contig102401.382.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at P-canaliculata_contig102401:2..814+ (Pelvetia canaliculata dioecious)back to top |