mRNA_P-canaliculata_contig102368.374.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102368.374.1
Unique NamemRNA_P-canaliculata_contig102368.374.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102368.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102368contigP-canaliculata_contig102368:167..994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size738
Cds size738
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.4143043-CDS-P-canaliculata_contig102368:166..6371622815597.4143043-CDS-P-canaliculata_contig102368:166..637Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102368 167..637 +
1693494157.6449342-CDS-P-canaliculata_contig102368:166..6371693494157.6449342-CDS-P-canaliculata_contig102368:166..637Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102368 167..637 +
1622815597.4296424-CDS-P-canaliculata_contig102368:727..9941622815597.4296424-CDS-P-canaliculata_contig102368:727..994Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102368 728..994 +
1693494157.6520689-CDS-P-canaliculata_contig102368:727..9941693494157.6520689-CDS-P-canaliculata_contig102368:727..994Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102368 728..994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102368.374.1prot_P-canaliculata_contig102368.374.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102368 167..994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102368.374.1

>prot_P-canaliculata_contig102368.374.1 ID=prot_P-canaliculata_contig102368.374.1|Name=mRNA_P-canaliculata_contig102368.374.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=246bp
MQAAQVTLEQLVNTIRATVKPEMWRNDSTSARIESLGNTLLITASDEMHT
QINDLLNLFREHWGKRRTVSVQTWWIRADAGVTSGLIDDESTAEIGAGVV
AENRWKEFFSKAKEEKKIAYSSTLTGHNNQTLHAISGKQISLTVGAEPFE
SNDIQWHKRIVGFRPVKTFFHNGAVIQVTPLATRGGNFVILDLQAKLNEL
AQGNRGDRISVEKEGGETTIQLDDMDYLSCQFSSTLRCPNGQIVLA
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mRNA from alignment at P-canaliculata_contig102368:167..994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102368.374.1 ID=mRNA_P-canaliculata_contig102368.374.1|Name=mRNA_P-canaliculata_contig102368.374.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig102368:167..994+ (Pelvetia canaliculata dioecious)
ATGCAGGCGGCCCAGGTAACGCTGGAACAACTCGTGAATACGATCCGTGC
AACTGTTAAACCAGAAATGTGGCGGAACGATTCTACTTCCGCGCGAATTG
AGTCTCTTGGTAACACGTTGCTAATTACCGCTTCGGACGAAATGCACACG
CAAATTAATGATCTTCTGAATCTCTTTCGTGAGCATTGGGGAAAACGCCG
TACAGTATCCGTTCAAACTTGGTGGATTCGAGCCGATGCTGGGGTTACGT
CAGGCCTCATCGACGACGAATCAACTGCGGAAATTGGTGCAGGAGTTGTT
GCAGAGAATCGCTGGAAGGAGTTCTTTAGCAAAGCAAAAGAGGAAAAGAA
AATTGCTTACTCTTCAACCTTGACCGGACATAACAATCAAACTCTGCATG
CCATCTCCGGAAAACAAATCTCACTGACCGTCGGCGCGGAGCCTTTCGAA
AGCAACGACATTCAATGGCATGTGAAAGACTTTAACGATCTCGAATCGGC
GACGTCAGAGTTTGAAGAAGATGGCTATGCGATAGAAAACCTCGGCTTTC
TCGGGCAAAAGAAACGAATCGTTGGGTTCCGTCCTGTCAAAACTTTTTTC
CACAACGGCGCTGTCATTCAAGTAACTCCGCTAGCGACGCGAGGCGGCAA
CTTTGTGATCTTGGACTTACAAGCCAAACTTAACGAACTTGCCCAAGGGA
ATCGCGGCGATCGAATTTCTGTCGAAAAAGAGGGCGGTGAGACGACAATT
CAACTGGATGACATGGATTACCTATCCTGCCAATTTAGCTCGACTCTCCG
TTGTCCCAACGGCCAAATCGTGCTCGCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig102368:167..994+

>mRNA_P-canaliculata_contig102368.374.1 ID=mRNA_P-canaliculata_contig102368.374.1|Name=mRNA_P-canaliculata_contig102368.374.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at P-canaliculata_contig102368:167..994+ (Pelvetia canaliculata dioecious)
ATGCAGGCGGCCCAGGTAACGCTGGAACAACTCGTGAATACGATCCGTGC
AACTGTTAAACCAGAAATGTGGCGGAACGATTCTACTTCCGCGCGAATTG
AGTCTCTTGGTAACACGTTGCTAATTACCGCTTCGGACGAAATGCACACG
CAAATTAATGATCTTCTGAATCTCTTTCGTGAGCATTGGGGAAAACGCCG
TACAGTATCCGTTCAAACTTGGTGGATTCGAGCCGATGCTGGGGTTACGT
CAGGCCTCATCGACGACGAATCAACTGCGGAAATTGGTGCAGGAGTTGTT
GCAGAGAATCGCTGGAAGGAGTTCTTTAGCAAAGCAAAAGAGGAAAAGAA
AATTGCTTACTCTTCAACCTTGACCGGACATAACAATCAAACTCTGCATG
CCATCTCCGGAAAACAAATCTCACTGACCGTCGGCGCGGAGCCTTTCGAA
AGCAACGACATTCAATGGCATATGCAGGCGGCCCAGGTAACGCTGGAACA
ACTCGTGAATACGATCCGTGCAACTGTTAAACCAGAAATGTGGCGGAACG
ATTCTACTTCCGCGCGAATTGAGTCTCTTGGTAACACGTTGCTAATTACC
GCTTCGGACGAAATGCACACGCAAATTAATGATCTTCTGAATCTCTTTCG
TGAGCATTGGGGAAAACGCCGTACAGTATCCGTTCAAACTTGGTGGATTC
GAGCCGATGCTGGGGTTACGTCAGGCCTCATCGACGACGAATCAACTGCG
GAAATTGGTGCAGGAGTTGTTGCAGAGAATCGCTGGAAGGAGTTCTTTAG
CAAAGCAAAAGAGGAAAAGAAAATTGCTTACTCTTCAACCTTGACCGGAC
ATAACAATCAAACTCTGCATGCCATCTCCGGAAAACAAATCTCACTGACC
GTCGGCGCGGAGCCTTTCGAAAGCAACGACATTCAATGGCATAAACGAAT
CGTTGGGTTCCGTCCTGTCAAAACTTTTTTCCACAACGGCGCTGTCATTC
AAGTAACTCCGCTAGCGACGCGAGGCGGCAACTTTGTGATCTTGGACTTA
CAAGCCAAACTTAACGAACTTGCCCAAGGGAATCGCGGCGATCGAATTTC
TGTCGAAAAAGAGGGCGGTGAGACGACAATTCAACTGGATGACATGGATT
ACCTATCCTGCCAATTTAGCTCGACTCTCCGTTGTCCCAACGGCCAAATC
GTGCTCGCTAAACGAATCGTTGGGTTCCGTCCTGTCAAAACTTTTTTCCA
CAACGGCGCTGTCATTCAAGTAACTCCGCTAGCGACGCGAGGCGGCAACT
TTGTGATCTTGGACTTACAAGCCAAACTTAACGAACTTGCCCAAGGGAAT
CGCGGCGATCGAATTTCTGTCGAAAAAGAGGGCGGTGAGACGACAATTCA
ACTGGATGACATGGATTACCTATCCTGCCAATTTAGCTCGACTCTCCGTT
GTCCCAACGGCCAAATCGTGCTCGCT
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