mRNA_P-canaliculata_contig10234.372.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10234.372.1
Unique NamemRNA_P-canaliculata_contig10234.372.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10234.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10234contigP-canaliculata_contig10234:1967..2386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3342156-CDS-P-canaliculata_contig10234:1966..23861622815597.3342156-CDS-P-canaliculata_contig10234:1966..2386Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10234 1967..2386 +
1693494157.619855-CDS-P-canaliculata_contig10234:1966..23861693494157.619855-CDS-P-canaliculata_contig10234:1966..2386Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10234 1967..2386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10234.372.1prot_P-canaliculata_contig10234.372.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10234 1967..2386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10234.372.1

>prot_P-canaliculata_contig10234.372.1 ID=prot_P-canaliculata_contig10234.372.1|Name=mRNA_P-canaliculata_contig10234.372.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
WTAGWQQHLRTVWWSEIPKVMMKWRIFSPEYVRTRDVAEKKLIFFARLTT
LCRSQADYSRVKFIIFLELLPPQDTWESLDVGRQMLRCDRRFEGQALLGQ
PIELCGSPSRVSSPYSSLISVILYFIFLLKNWYGREDYE*
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mRNA from alignment at P-canaliculata_contig10234:1967..2386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10234.372.1 ID=mRNA_P-canaliculata_contig10234.372.1|Name=mRNA_P-canaliculata_contig10234.372.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at P-canaliculata_contig10234:1967..2386+ (Pelvetia canaliculata dioecious)
TGGACCGCGGGTTGGCAACAGCACCTCCGTACCGTGTGGTGGTCGGAGAT
ACCCAAGGTGATGATGAAGTGGCGTATATTTTCCCCGGAGTATGTTCGAA
CTCGTGACGTTGCGGAGAAGAAATTGATATTTTTTGCGCGATTGACAACT
CTTTGTCGATCACAAGCAGACTATAGTAGAGTCAAGTTCATTATATTTCT
CGAGCTTTTGCCTCCGCAGGACACATGGGAAAGTCTAGATGTTGGACGAC
AGATGCTGCGGTGTGATCGACGATTCGAAGGACAGGCGCTCTTGGGACAA
CCGATCGAGCTGTGTGGATCGCCCTCGCGTGTTTCCTCTCCGTACTCATC
TCTTATTTCTGTAATATTATATTTTATATTTCTCCTCAAAAACTGGTATG
GCCGAGAGGACTACGAGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10234:1967..2386+

>mRNA_P-canaliculata_contig10234.372.1 ID=mRNA_P-canaliculata_contig10234.372.1|Name=mRNA_P-canaliculata_contig10234.372.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig10234:1967..2386+ (Pelvetia canaliculata dioecious)
TGGACCGCGGGTTGGCAACAGCACCTCCGTACCGTGTGGTGGTCGGAGAT
ACCCAAGGTGATGATGAAGTGGCGTATATTTTCCCCGGAGTATGTTCGAA
CTCGTGACGTTGCGGAGAAGAAATTGATATTTTTTGCGCGATTGACAACT
CTTTGTCGATCACAAGCAGACTATAGTAGAGTCAAGTTCATTATATTTCT
CGAGCTTTTGCCTCCGCAGGACACATGGGAAAGTCTAGATGTTGGACGAC
AGATGCTGCGGTGTGATCGACGATTCGAAGGACAGGCGCTCTTGGGACAA
CCGATCGAGCTGTGTGGATCGCCCTCGCGTGTTTCCTCTCCGTACTCATC
TCTTATTTCTGTAATATTATATTTTATATTTCTCCTCAAAAACTGGTATG
GCCGAGAGGACTACGAGTAGTGGACCGCGGGTTGGCAACAGCACCTCCGT
ACCGTGTGGTGGTCGGAGATACCCAAGGTGATGATGAAGTGGCGTATATT
TTCCCCGGAGTATGTTCGAACTCGTGACGTTGCGGAGAAGAAATTGATAT
TTTTTGCGCGATTGACAACTCTTTGTCGATCACAAGCAGACTATAGTAGA
GTCAAGTTCATTATATTTCTCGAGCTTTTGCCTCCGCAGGACACATGGGA
AAGTCTAGATGTTGGACGACAGATGCTGCGGTGTGATCGACGATTCGAAG
GACAGGCGCTCTTGGGACAACCGATCGAGCTGTGTGGATCGCCCTCGCGT
GTTTCCTCTCCGTACTCATCTCTTATTTCTGTAATATTATATTTTATATT
TCTCCTCAAAAACTGGTATGGCCGAGAGGACTACGAGTAG
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