Homology
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Match:
D7G5E1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E1_ECTSI)
HSP 1 Score: 76.6 bits (187), Expect = 2.010e-12
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 RFSNFTFLASICAAADNGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEAFLRQAMFAMPTPALLIQFVTRN 216
RFS F +A+ C D AW VVRA+P RCL YLA+KC LLE FL+Q +FAMPTPALLI FV++
Sbjct: 329 RFSKFKTIAA-CTQGDPDAAAAWRRVVRAKPHYRCLNPDYLAHKCNLLETFLQQVLFAMPTPALLIHFVSQK 399
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Match:
D7FHG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG1_ECTSI)
HSP 1 Score: 57.0 bits (136), Expect = 7.280e-6
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 1 RFSNFTFLASICAAAD-NGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEAFLRQAMFAMPTPALLIQFV 207
R+S+F LA +D +AW H+ + Q RCL YL KC LLE FL Q +F +PTP+LL+ FV
Sbjct: 234 RYSDFKLLAEYAKISDLRDTVKAWAHIQQTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFV 303
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.01e-12 / Id = 55.56 Expect = 7.28e-6 / Id = 44.29 Sequence D7G5E1_ECTSI D7FHG1_ECTSI
Match Name E-value Identity Description
D7G5E1_ECTSI 2.010e-12 55.56 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more] D7FHG1_ECTSI 7.280e-6 44.29 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Exons 3 Model size 768 Cds size 261 Stop 1 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815597.0586214-CDS-P-canaliculata_contig10231:271..421 1622815597.0586214-CDS-P-canaliculata_contig10231:271..421 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10231 272..421 + 1693494157.4840066-CDS-P-canaliculata_contig10231:271..421 1693494157.4840066-CDS-P-canaliculata_contig10231:271..421 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10231 272..421 + 1622815597.071889-CDS-P-canaliculata_contig10231:3214..3325 1622815597.071889-CDS-P-canaliculata_contig10231:3214..3325 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10231 3215..3325 + 1693494157.49377-CDS-P-canaliculata_contig10231:3214..3325 1693494157.49377-CDS-P-canaliculata_contig10231:3214..3325 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10231 3215..3325 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815597.0873957-UTR-P-canaliculata_contig10231:3325..3581 1622815597.0873957-UTR-P-canaliculata_contig10231:3325..3581 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10231 3326..3581 + 1693494157.5018682-UTR-P-canaliculata_contig10231:3325..3581 1693494157.5018682-UTR-P-canaliculata_contig10231:3325..3581 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10231 3326..3581 + 1622815597.100246-UTR-P-canaliculata_contig10231:3740..3991 1622815597.100246-UTR-P-canaliculata_contig10231:3740..3991 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10231 3741..3991 + 1693494157.5106478-UTR-P-canaliculata_contig10231:3740..3991 1693494157.5106478-UTR-P-canaliculata_contig10231:3740..3991 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10231 3741..3991 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10231.368.1
>prot_P-canaliculata_contig10231.368.1 ID=prot_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=87bp
RFSNFTFLASICAAADNGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEA back to top mRNA from alignment at P-canaliculata_contig10231:272..3991+
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10231.368.1 ID=mRNA_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3720bp|location=Sequence derived from alignment at P-canaliculata_contig10231:272..3991+ (Pelvetia canaliculata dioecious)CGTTTTTCAAACTTTACGTTCTTGGCTTCTATCTGTGCGGCGGCCGACAA
TGGTTGCAACGAGGCTTGGGGCCACGTAGTGAGGGCCCAGCCGGCCCGCA
GGTGCCTCACCCGAGCGTACCTGGCGTACAAGTGCAGATTGCTAGAGGCG
GTGAGTGCTTCAAGAGGTGGAGTGATGTCAGGTTTGCAGCAGACAACTAA
AGGAAGGACACAACGACTCTGACTTATTGTCGCATTGAGATTCTCCCAAG
GGAGGATCAATTGTACTTATTACGAAAACGTCTGATCAGACGCGACAATT
GTGTGTGTGTGTGTGTATGTGAGAGAGAGAAAGAGTTTATGCACGGGGTA
CTACATTTACTCTCCTCTCAAGGTCGCATTCGACAAATGATTGGCAGATT
GCTGTATATGCAACCTGCCAAAAAAAACCTACTGCCCAAATCCCGTCCTT
CCCCACGAAACCGACGTGAGATGTGGTGCTACTCTTCCAAACGGAAGGGC
TCGGAAAAGGTTTTATTATGGAGGATCAATTGCTACCTTGTGTTTTTCCG
TATCCCTTGGTCAAAGCGAAAAACACTGATGGGTACTTAAATGTGACCGA
GGGCTCTTTCCCGCGAACGTTCACGCACTCGGATGATTAACACGCGCCAG
ATCACACACACTCCAAGGTACGTTCTCCTCGCACACAGAGCACAGCAGCC
TTGCCCCCCATGACGGGCCTGGGTAGTGTCTAAGAGCAGGCCTTCAACAA
TACAATAGCGACGACACCTGACGCCTGAGGCAAAAACTTTAGCCGACTAC
ACCCCACTCGATCGAACGAGCTGATCGAGCCGGCTAAGTCGCCCAATGTA
AAAAAGTTATACAAAAAAAGTGCGAGTGTCGTTGCAGTAATGCTGTCTTC
AGCGGAGAGAGAGGACGACAACGGGTTGTAACAGCTGTCCCCTTTACCGT
GCTTGTAGTTTGTGACCATGTTTTTTCGGGTGACAACAGCAGCAGCAGGC
ATATGATGTTAATCTAGTACGGTCGGGTCGCGTAAATTAACGAGCCAACA
GTAGACACGACCGCCGGCGTCATAGATTCCGTCGAGTACGTTAAAATCTC
AGATAACTGGGCTAACAAGAATGTCATGGTACCAATGCCTATGACAAATG
GATACTGTGATACACGCGAACCAGTGAATATAGCACACCATGTAAGAAAG
GGTGCCCTGTAACTTTTCTTCTGGAATACATTCTCTCCAAGAAGCGTGTT
ATTTAAGCATACCATGTAAGTCGAACAAGGGCCACTGAAGCGCCGAACAA
GTTTACCTAACCCCAAACTATGTCGCAATCTTTTGCTAGCTGCGTTTTGA
GCAATCTTTCCCCAGTCTTCACACTCCTTGCAAGCTCTAGATGTCTCCTG
CTGCGGCGTCCACCTTTAGCCTTTCGGGGTCCACCCCTAGTCTAGTCTAG
TCTAGCGGCGTCTATTTCTACAATATAATGATGGTTGTCATCCGAGCGAT
ATGTTCCATGCGGTCTTCTTGGTCCCGGGCGAAGCACTGCGGAGTTCCCA
GTCAGCTCTCCGGAGTCCTAAACACGAAACATGATATTCAATGTCCCCTC
CCCCCGCTCTCCAAGGAAAAAGAAGTTTATACCAAGTACACTTAAATATA
ATATTTGTGTTTTACGAAATATGTCATTCGAAATCTCGTTTAGCACACCC
GAAGGCCCCTCAATACATAACATTCCCCTTCTCCTTCGCAATTGTCGTAA
ATGACGACCCGACCGTGACCGCGTCGGCCTATACTTCGTGAACCGTCCCC
CCCCTCTCTCCCCCTCCCTCTGTTCTCACTGCGAAAAGAAAATTTTTCTA
TGACATGCGCGAAAAGAACATTTTTCTTGTCCCGTGCGGATACCTACGAA
GTTTTCCAAAATAGGAGCTACAGCCGTCCAGAATGTGTGCATTTTTGCCA
TCACTACGGGGAATCCGTCGTGCGTATGCCAGGATGAAGGCAAACATATT
AGCACGACCATACAGCCAGGAAGCGAGCTTTGGTATTTGTATCCCCGTCA
ATAAACTCTTGCGGACTGAGCGGCGGCACAGGTTAAATAACTCTTCTACT
CACGATCAGCACAACTCCTCCTTCTCGGCCTACCATACCATAAAATTAAA
ACCATCTCGTCGCTACGGTGGTGGCATATGTACGCCACCAACCTCGACAA
CTCTGTCCGGTTTGTCAAGTATTCTGGCGTCCAATGACGACGCACCCAAT
ACAGTGGACAGTTGTAGAACTGCATCTCCAACGCCAGCATGCGTGTTGCA
AGCTGGCCAATCAAGCTGACTCCGTCCCAGTGGTGACGTTGTTATAGGTA
TACTCTTAATAACTTGTTCGTCTTTCATGTTACACCTATCCTTACAGTTC
ACAGCCCTCCCCGGGGCTGGAGAGAAGGAAATGCTTTCTATTTTAGTCCG
ATTACGTTGTACTTGGTACTGCGCCAATTCGACCTTCTTCTGGTCCTTCT
GGTCCTTCCGGTCAACTGGGAAGATAAGGAATGAAAATAATCTACATACC
GTACTAAAACGTTTCCACGTTTTGGGGAAGATTGTCTGTGTGTTTCTCTT
TCTTGTTTTCTATTGTTTCTTCTTCATTCTTGGGAAGTACTTCAACCAAC
ATGCTGATTCTGGAAGAAGTAAAGATGTTTCCTGTATTTGAAGCATGCGG
GAGGGGGGAGTTGCACGAGAAAGCATTGCATTTTCCCCCTCGAAATGCTT
CTTCGATAACATAAGTAGTGACAGCCAATCCTTTCAAGAGAAGTAGAAGG
GCAGCACTAAGACTCTCCTTTTGTTACGATCGCTTGCGCCGGTATGAGTA
CTCTCTCTTCAGATAACCTTATTAATAATTGGCGTTGTCCTTCTTTGGCT
CTCCTTCTTTGGCCGGCCCTCGCTGTTCTTTCGGTTTCTGCAGTTCTTAC
GACAGGCCATGTTCGCCATGCCCACGCCCGCGCTTCTCATCCAGTTCGTG
ACACGTAATTACAGCTACGGATCGTTGGTTTGGAATAGGGTATTGCCGTG
TTGA GGTGATGACATCACGGCACATGGGTCACAATCCGGTCTTTGCTTAT
CACGCCGTTCATGTATTTCGAGAACGAGCGGGCCGACTCTAAAATTCGCC
GTATTTCATCATGTCGCTTTCGTCTGTCGAACGGTGATCTTTTTGTATTT
TTTCTCCTAGAGAACATTGTTTACTAGGAGCTCTTGTAACCACGCGAATA
AAAGGTGTAGGTGGCAGACGTGATCGATTTCGACGATTTCGCCTGACTTT
TGAGCAGACC GCACGGAAGAATGTTCGGGGCTTTGTCATTCAGGCTCTTA
CCAGAGCTCTGGAGAGTTGTGTCTCTGGGTATTTCCTTGGGGTTGATTCG
ATTTCAACCTTTCTCAATTGCATTGGCCAAGGTAGCATCCCTACCCGAAA
TAGATAGATAACCGAAAAGTTCTATATCTATTGAGGCGTTTGAATGTGAA
AGTAGCGTGATTTTTATTTTTGCTGCTGCTGTGTTGACGTTGAAAAATAA
GAGCGTTTCTCACCCTTCGCAGGAGCTCTGTATTGGCACAAACTACCATC
TGTTCGATTTTTAGATTTCAGATAAAAAATACTCATTAACTTGTGCTTAA
AGATATCTGCATTCATTTGTATACAGGCGGCGGAACTCGTTGTATGGGTT
TGACTTGGTCCATATCCCAC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10231:272..3991+
>mRNA_P-canaliculata_contig10231.368.1 ID=mRNA_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at P-canaliculata_contig10231:272..3991+ (Pelvetia canaliculata dioecious) back to top