mRNA_P-canaliculata_contig102302.366.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI00040BC311 (winged helix DNA-binding protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00040BC311) HSP 1 Score: 182 bits (462), Expect = 1.140e-56 Identity = 97/143 (67.83%), Postives = 112/143 (78.32%), Query Frame = 1 Query: 1 MQLSGNPREDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429 M S NPRE+IAYEVRGTFRAF NALIT LA ADISVGFFHILR+SWPE GR QK++A+LAFMTPSVASQQI+KMC GLL R++ DD RKKIVKLTK G +KK LV+ ++ IP ASE +S D++T VL KLR LK Sbjct: 1 MSFSENPRENIAYEVRGTFRAFENALITALAKADISVGFFHILRLSWPEEGRKQKEVADLAFMTPSVASQQIKKMCKAGLLSRESAPDDDRKKIVKLTKEGLDKKNKLVSPIILIPVIASEGISDADMETATRVLHKLRLGLK 143
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI001C4C5BCE (winged helix DNA-binding protein n=1 Tax=Sphingobium lactosutens TaxID=522773 RepID=UPI001C4C5BCE) HSP 1 Score: 75.5 bits (184), Expect = 1.440e-14 Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 1 Query: 19 PREDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429 P + Y VR R F L LA DI GF++ LR+ W TQK ++++ + + I+ M GL+ R+ D+ D RK++V LT GR + L+ ++I R A+ + EDL+ + VL+++ NL+ Sbjct: 2 PEKSFGYLVRRCHRRFDRLLNARLATHDIKTGFWYYLRVLWIRDQVTQKYLSDMTNVAENTTVTMIEGMVNSGLVQREVDATDKRKRLVGLTPYGRSLENKLMGHAVEINRIATRGIKEEDLEVSRRVLARMSENLQ 138
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A1U7DHK0_9RHOB (MarR family transcriptional regulator n=1 Tax=Brevirhabdus pacifica TaxID=1267768 RepID=A0A1U7DHK0_9RHOB) HSP 1 Score: 60.8 bits (146), Expect = 7.330e-9 Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 1 Query: 37 YEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426 Y +R T R F N L + +++G ++ LR+ W +G TQ+ +++ + I+ M GL+ R+ D D RK++V LT+ G + L+ ++ A+ D STE+ + +L ++R+ L Sbjct: 20 YLIRSTHRHFQNYLSLRIRPHGVTLGMWYFLRVLWEHNGLTQRQLSDQVGTMEPTTLEAIRAMEKRGLVRRERDPADGRKRLVFLTEEGEALRAVLLPIAREVVDEAAADFSTEEREQLRGLLMRMRSRL 149
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A1Y6B2G3_9HYPH (DNA-binding transcriptional regulator, MarR family n=2 Tax=Tistlia TaxID=1321364 RepID=A0A1Y6B2G3_9HYPH) HSP 1 Score: 59.3 bits (142), Expect = 3.350e-8 Identity = 38/136 (27.94%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 25 EDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAE-LAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429 ED+A +R R F L +++ +++G ++ LR W E G +Q+++++ + M P+ S + M +GL+ R+ D D R++ V LT GR K + + ++ R A + S D+ +L + NLK Sbjct: 28 EDLAGRIRDVHRQFGRVLQQRISELGLTLGTWYFLRALWEEDGLSQRELSQRIGTMEPTTVSA-LNAMERLGLVRRERDPHDKRRRRVYLTDHGRSLKGEALGLLGELDRQALQGFSGADVGQLHTLLDSVAENLK 162
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A7V9PCL2_9ACTN (MarR family transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9PCL2_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 3.440e-7 Identity = 34/132 (25.76%), Postives = 65/132 (49.24%), Query Frame = 1 Query: 31 IAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426 + + +R T R+ A L + +++G ++ LR+ W E G TQ+++++ I M A GL+ R+ + D RK+ + LT+ GR + L+ ++ R AS + D+ L+ +R N+ Sbjct: 11 VLHLLRTTHRSAARLLQARIDPHGVTLGMWYFLRVLWEEDGLTQRELSQRVGTVEPTTVTAINAMVARGLVRREANPADRRKRHIHLTEEGRWLRATLLPHAAEVNRIASRGIPDADMARLRTALAAMRRNV 142
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A0M2P7F7_9BACI (HTH marR-type domain-containing protein n=1 Tax=Bacillus sp. SA1-12 TaxID=1455638 RepID=A0A0M2P7F7_9BACI) HSP 1 Score: 55.5 bits (132), Expect = 7.100e-7 Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1 Query: 124 ILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNLK 429 ILR W G T +AE + S SQ I ++ G+++R++D +D R +IVKLT+ G+E + NA +++ +++E+ ++++ K+ + LK Sbjct: 42 ILRFLWKHDGSTIGQLAERLEVRSSSMSQMIDRLELAGMVYRESDKNDARTRIVKLTEAGKETITKMKNAQVELLSGPFNQLTSEEQTALVEIMMKMTSQLK 143
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A522JZC7_9BURK (MarR family transcriptional regulator n=1 Tax=Candidimonas sp. TaxID=1912597 RepID=A0A522JZC7_9BURK) HSP 1 Score: 55.1 bits (131), Expect = 9.580e-7 Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 1 Query: 73 ALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426 AL L + IS G + LRI W G TQ++++E+A +TP S + + ++G + R D+ + V LTK GR K L ++ A + +E +Q +VL K+ NL Sbjct: 4 ALQIRLGEHSISFGHWSYLRILWEHDGLTQRELSEIAGVTPPTTSLAMNAIESLGYVKRVKKPDNKKNIYVYLTKAGRALKEKLQPLAEEVNAIAINGLESEKVQIAREVLLKIIANL 121
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: A0A2E9DFK5_9GAMM (MarR family transcriptional regulator n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2E9DFK5_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 2.390e-6 Identity = 39/134 (29.10%), Postives = 69/134 (51.49%), Query Frame = 1 Query: 25 EDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKLRTNL 426 E IA+ +R R F N+L L ++ GF+ LR W E G +Q+D++E +T + I++M A GL+ + + +++V LTK GRE + L ++ A + E++ ++L ++ TNL Sbjct: 25 ERIAHIIRQCARDFYNSLEKRLQPYGVNHGFWAYLRELWVEEGISQRDLSERVGLTGPTTNSVIKRMEAAGLVELRPIVEGKPRRVVYLTKRGRELRDILEPLAKEVNDIAVAGMEHEEVVLIRNLLLRIHTNL 158
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI001FBBA390 (MarR family transcriptional regulator n=1 Tax=Novosphingobium sp. 2580 TaxID=2930093 RepID=UPI001FBBA390) HSP 1 Score: 51.6 bits (122), Expect = 1.990e-5 Identity = 38/129 (29.46%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 40 EVRGTFRAFANALITELADADIS----VGFFHILRISWPESGRTQKDIAELAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGREKKRGLVNAMLDIPRSASEDVSTEDLQTTLDVLSKL 414 ++ G R++ LA +IS H+ R+ G Q D+A +T + + +Q + +GL+ R+ D D R K ++LT GR R + ++++ DVS+EDLQTTL+VL ++ Sbjct: 14 QILGLARSWRQLADRVLASLEISNSTGYALLHLERLG---DGVRQSDLAREIGITEASLVRTLQHLERVGLVCREADPGDGRAKALRLTADGRRLARLIDTRLIELRHELLHDVSSEDLQTTLNVLERV 139
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Match: UPI000E5C9103 (MarR family transcriptional regulator n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5C9103) HSP 1 Score: 50.1 bits (118), Expect = 9.190e-5 Identity = 28/96 (29.17%), Postives = 55/96 (57.29%), Query Frame = 1 Query: 22 REDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESGRTQKDIAE-LAFMTPSVASQQIQKMCAIGLLHRQTDSDDTRKKIVKLTKMGR 306 R+ + ++R RA+ L LA+ +++G ++ L W E G +Q+ ++ + M P+ S + +M GL+ RQ D D R+++V+LT++G+ Sbjct: 24 RDGVGAKLRDAHRAYNRLLQARLAEEGVTLGMWYFLCALWQEDGISQRQLSRRVGTMEPTTVSA-LAQMERRGLVQRQRDPMDQRRRVVRLTRVGK 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102302.366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102302.366.1 >prot_P-canaliculata_contig102302.366.1 ID=prot_P-canaliculata_contig102302.366.1|Name=mRNA_P-canaliculata_contig102302.366.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp MQLSGNPREDIAYEVRGTFRAFANALITELADADISVGFFHILRISWPESback to top mRNA from alignment at P-canaliculata_contig102302:318..749+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102302.366.1 ID=mRNA_P-canaliculata_contig102302.366.1|Name=mRNA_P-canaliculata_contig102302.366.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig102302:318..749+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102302:318..749+ >mRNA_P-canaliculata_contig102302.366.1 ID=mRNA_P-canaliculata_contig102302.366.1|Name=mRNA_P-canaliculata_contig102302.366.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig102302:318..749+ (Pelvetia canaliculata dioecious)back to top |