mRNA_P-canaliculata_contig102252.357.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A7C3MRH5_9FIRM (Uncharacterized protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3MRH5_9FIRM) HSP 1 Score: 75.1 bits (183), Expect = 5.340e-13 Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 61 LAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQPEPEVDFKTRNYL-GSELLDRYIEQNYSLVKQVGDYWVYQK 420 L A++FI T ++ +++G + H R+F+++I Y+ R + + L PGL T +Q ++I +LK+ NV++IVLWS E + + G LLD +I NY+ V G Y + QK Sbjct: 472 LTAIRFIQANTKPDEPIFVGNSRHDRIFVNDIMFYFLAERHSATKYHELHPGLATTEEVQLEIIDELKRKNVKFIVLWSGAENVTEPNESSLSSGVTLLDDFIRMNYAPVMYFGPYKILQK 592
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A1V5RNY9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium ADurb.Bin325 TaxID=1852859 RepID=A0A1V5RNY9_9CHLR) HSP 1 Score: 72.4 bits (176), Expect = 4.590e-12 Identity = 36/126 (28.57%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 52 PDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIV---LWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQK 420 PD+ A+ + +R ++Y+Y+GV H ++F +++ Y+ GR+ + L PGL +Q +++ +L+ +V WIV +W EP ++ G LLD YI Q Y +G Y ++++ Sbjct: 429 PDQEQAVLALQRRAAADEYIYVGVHRHDKLFANDVLFYFLAGRRPATKYTELHPGLANTLPVQQEIVDELQAKDVRWIVTYQIWDSNEPNTSAEST---GVVLLDDYIRQRYRATVTLGGYQIWER 551
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A522FQ47_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A522FQ47_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 2.620e-8 Identity = 31/118 (26.27%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 67 ALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQK 420 A+ ++ + + +++G H R+ ++++ Y+ G+ + + L PG+ T +Q ++I L+KNNV ++VL E ++ G +LD +I NY+L KQ G +++K Sbjct: 420 AVNYLKFSIPQNEKIFVGNYSHDRILLNDLMFYFLSGKDACTKYHELHPGIATTHKVQKEIINDLQKNNVNYLVLCENNEFTEQNESSISSGVFVLDNFIHDNYALYKQFGTNQIWKK 537
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A3N0ZUF8_9BACT (PMT_2 domain-containing protein n=1 Tax=Bacteroidetes/Chlorobi group bacterium ChocPot_Mid TaxID=2382230 RepID=A0A3N0ZUF8_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 5.760e-7 Identity = 31/120 (25.83%), Postives = 62/120 (51.67%), Query Frame = 1 Query: 70 LQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQKSNK 429 + ++ + + + + + H +V ++++ Y+ GR R + PG+TT +Q ++I++L+K NV++IV E K+R LLD +I+ NY + + G Y + K +K Sbjct: 435 VNYLRRNVDENNKILVANYFHDKVLMNDLMIYYLSGRNSATRYHEFHPGITTRADVQKEIISELRKWNVDFIVQCPNTEFPEPNKSRVSSRVFLLDSFIDSNYIQINKFGGYKILFKKSK 554
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: UPI001992D918 (Uncharacterized protein n=1 Tax=Blastomonas aquatica TaxID=1510276 RepID=UPI001992D918) HSP 1 Score: 56.6 bits (135), Expect = 1.340e-6 Identity = 33/121 (27.27%), Postives = 59/121 (48.76%), Query Frame = 1 Query: 49 NPDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQ----PEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVG 399 N D + ++I + + + +++G+ H ++FI+ + Y R G + +PGL T IQ Q+IA L++N V W+V S EP ++ G +LD ++ + Y V G Sbjct: 255 NADYIRTGRYIRAHSRESEKIFVGLNRHDKIFINPMILYHAADRLPGTHWHHFDPGLQTRADIQRQVIADLRRNRVRWVVRDSSFDDVAEPNASARSS---GVGILDDFLAEQYRPVASSG 372
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: UPI00166838BE (hypothetical protein n=1 Tax=Blastomonas aquatica TaxID=1510276 RepID=UPI00166838BE) HSP 1 Score: 56.6 bits (135), Expect = 1.470e-6 Identity = 33/121 (27.27%), Postives = 59/121 (48.76%), Query Frame = 1 Query: 49 NPDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIVLWSQ----PEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVG 399 N D + ++I + + + +++G+ H ++FI+ + Y R G + +PGL T IQ Q+IA L++N V W+V S EP ++ G +LD ++ + Y V G Sbjct: 458 NADYIRTGRYIRAHSRESEKIFVGLNRHDKIFINPMILYHAADRLPGTHWHHFDPGLQTRADIQRQVIADLRRNRVRWVVRDSSFDDVAEPNASARSS---GVGILDDFLAEQYRPVASSG 575
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Match: A0A432LQH5_9GAMM (Uncharacterized protein n=1 Tax=Dyella dinghuensis TaxID=1920169 RepID=A0A432LQH5_9GAMM) HSP 1 Score: 56.2 bits (134), Expect = 1.980e-6 Identity = 34/129 (26.36%), Postives = 66/129 (51.16%), Query Frame = 1 Query: 52 PDELAALQFIHQRTTKEDYVYIGVTDHARVFISNIKPYWELGRKIGVRDYTLEPGLTTEPAIQNQMIAQLKKNNVEWIV----LWSQPEPEVDFKTRNYLGSELLDRYIEQNYSLVKQVGDYWVYQKSN 426 P L ++I++ T + + + +G+ H ++FI+ + Y+ R G R +PG+ IQ +MI LK+N+V ++V S+ EP ++ G LLD Y+ Y + + G+ V+ +++ Sbjct: 423 PPYLLVGRYINRHTDQNERILVGLDRHDKIFINPMSLYYASDRLPGTRWSQYDPGIQNSQEIQGEMIKDLKRNDVRYVVRDTSFDSKKEPN---ESAISTGVHLLDYYLAAQYRPIAKSGNVQVWLRND 548 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102252.357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102252.357.1 >prot_P-canaliculata_contig102252.357.1 ID=prot_P-canaliculata_contig102252.357.1|Name=mRNA_P-canaliculata_contig102252.357.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp MSADLPLSEPEAKLYDNPDELAALQFIHQRTTKEDYVYIGVTDHARVFISback to top mRNA from alignment at P-canaliculata_contig102252:70..501- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102252.357.1 ID=mRNA_P-canaliculata_contig102252.357.1|Name=mRNA_P-canaliculata_contig102252.357.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig102252:70..501- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102252:70..501- >mRNA_P-canaliculata_contig102252.357.1 ID=mRNA_P-canaliculata_contig102252.357.1|Name=mRNA_P-canaliculata_contig102252.357.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig102252:70..501- (Pelvetia canaliculata dioecious)back to top |