mRNA_P-canaliculata_contig10212.336.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10212.336.1
Unique NamemRNA_P-canaliculata_contig10212.336.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10212.336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10212contigP-canaliculata_contig10212:1552..2528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size977
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.7842057-UTR-P-canaliculata_contig10212:1551..20391622815594.7842057-UTR-P-canaliculata_contig10212:1551..2039Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10212 1552..2039 +
1693494156.180683-UTR-P-canaliculata_contig10212:1551..20391693494156.180683-UTR-P-canaliculata_contig10212:1551..2039Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10212 1552..2039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.8011868-CDS-P-canaliculata_contig10212:2039..25281622815594.8011868-CDS-P-canaliculata_contig10212:2039..2528Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10212 2040..2528 +
1693494156.1899328-CDS-P-canaliculata_contig10212:2039..25281693494156.1899328-CDS-P-canaliculata_contig10212:2039..2528Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10212 2040..2528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10212.336.1prot_P-canaliculata_contig10212.336.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10212 2040..2528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10212.336.1

>prot_P-canaliculata_contig10212.336.1 ID=prot_P-canaliculata_contig10212.336.1|Name=mRNA_P-canaliculata_contig10212.336.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=163bp
MRRWRKPLLLRPIRVVPHVTLFWRERKPRLPRGVGMTCPKRSIAAAVGAE
TAAAAAEVGAAEAVSAEAAAAEGSGGEVDPVPKARGAAPEPATAPPAIFG
LIAWLASTRPAGEGHEDHGAAYAAGGWATGLRPALVVDSGGAAAQWRVGT
GSSAAAGAAAAAA
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mRNA from alignment at P-canaliculata_contig10212:1552..2528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10212.336.1 ID=mRNA_P-canaliculata_contig10212.336.1|Name=mRNA_P-canaliculata_contig10212.336.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at P-canaliculata_contig10212:1552..2528+ (Pelvetia canaliculata dioecious)
AGTTTTCAATCGTTTGCGTAATGCTTTATGCCCTTCACTTCACCACCTGT
AGCCCCCCCGTCCGCTACCACCCTCGCCGCAGCCACTGCTCCCGCCTGGA
AAGTAGCCCGGAGCGTGAAGCTGCTGCGCCTGCGCTTGTGCCTGCGTTTG
AGATTGCGTGTGCGCTTGGGTCTGAGATTGACCACCCAGAATGTACGGCC
CAAGGGCCGCCGGGGCGGCCGTGGCGTTTTTCGCGGTGCCTGTCTCGCGC
CTCTTGGCAAGCGTGGCCGCCGCTTGGCGAATGGGTCTCGCCGCATCAGA
CGGGGGGGGCGGCGCCGTGGTCCACGACGCTTTGCTGCTGCCGCCACTGT
TGTTCACGACAGCGGCAGCGGGGCCGGCACCAGCAGTTACCACCGCAACA
GGAGGAGGGGGAGGAGGAGGAGCAACTACGGGAACTGTAGAGGAAGGCGG
CGCCCTAGCGTAAAATACGGTACCGGCCGAGGATCTTGATGCGCCGCTGG
AGAAAACCGCTACTGCTGCGGCCGATCCGTGTTGTTCCCCACGTGACGCT
GTTCTGGCGTGAACGTAAACCGAGGTTGCCGCGTGGTGTGGGGATGACCT
GCCCAAAGCGGTCGATTGCTGCTGCTGTTGGTGCTGAGACGGCGGCGGCG
GCGGCGGAGGTGGGGGCCGCGGAGGCGGTATCAGCGGAGGCGGCGGCGGC
GGAGGGTTCGGGAGGAGAGGTTGACCCCGTCCCGAAGGCACGCGGTGCCG
CGCCTGAACCTGCGACGGCGCCGCCTGCGATATTCGGCCTGATTGCGTGG
CTGGCGTCAACAAGACCGGCTGGCGAGGGTCACGAGGATCATGGCGCTGC
GTATGCTGCCGGTGGATGGGCAACTGGATTGCGTCCAGCTTTGGTGGTTG
ACTCGGGTGGGGCGGCTGCACAGTGGCGGGTCGGGACGGGGAGCTCGGCA
GCCGCGGGAGCTGCTGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10212:1552..2528+

>mRNA_P-canaliculata_contig10212.336.1 ID=mRNA_P-canaliculata_contig10212.336.1|Name=mRNA_P-canaliculata_contig10212.336.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at P-canaliculata_contig10212:1552..2528+ (Pelvetia canaliculata dioecious)
ATGCGCCGCTGGAGAAAACCGCTACTGCTGCGGCCGATCCGTGTTGTTCC
CCACGTGACGCTGTTCTGGCGTGAACGTAAACCGAGGTTGCCGCGTGGTG
TGGGGATGACCTGCCCAAAGCGGTCGATTGCTGCTGCTGTTGGTGCTGAG
ACGGCGGCGGCGGCGGCGGAGGTGGGGGCCGCGGAGGCGGTATCAGCGGA
GGCGGCGGCGGCGGAGGGTTCGGGAGGAGAGGTTGACCCCGTCCCGAAGG
CACGCGGTGCCGCGCCTGAACCTGCGACGGCGCCGCCTGCGATATTCGGC
CTGATTGCGTGGCTGGCGTCAACAAGACCGGCTGGCGAGGGTCACGAGGA
TCATGGCGCTGCGTATGCTGCCGGTGGATGGGCAACTGGATTGCGTCCAG
CTTTGGTGGTTGACTCGGGTGGGGCGGCTGCACAGTGGCGGGTCGGGACG
GGGAGCTCGGCAGCCGCGGGAGCTGCTGCGGCGGCGGCGATGCGCCGCTG
GAGAAAACCGCTACTGCTGCGGCCGATCCGTGTTGTTCCCCACGTGACGC
TGTTCTGGCGTGAACGTAAACCGAGGTTGCCGCGTGGTGTGGGGATGACC
TGCCCAAAGCGGTCGATTGCTGCTGCTGTTGGTGCTGAGACGGCGGCGGC
GGCGGCGGAGGTGGGGGCCGCGGAGGCGGTATCAGCGGAGGCGGCGGCGG
CGGAGGGTTCGGGAGGAGAGGTTGACCCCGTCCCGAAGGCACGCGGTGCC
GCGCCTGAACCTGCGACGGCGCCGCCTGCGATATTCGGCCTGATTGCGTG
GCTGGCGTCAACAAGACCGGCTGGCGAGGGTCACGAGGATCATGGCGCTG
CGTATGCTGCCGGTGGATGGGCAACTGGATTGCGTCCAGCTTTGGTGGTT
GACTCGGGTGGGGCGGCTGCACAGTGGCGGGTCGGGACGGGGAGCTCGGC
AGCCGCGGGAGCTGCTGCGGCGGCGGCG
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