mRNA_P-canaliculata_contig10210.335.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10210.335.1
Unique NamemRNA_P-canaliculata_contig10210.335.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: D7FKC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC7_ECTSI)

HSP 1 Score: 584 bits (1505), Expect = 7.280e-183
Identity = 427/1078 (39.61%), Postives = 521/1078 (48.33%), Query Frame = 1 
Query:    1 LLHRTPRNSHAEDMDLSLQAISITTHVQLERRQGLGPRVLVELVDPNAALHLQAAGLKHVVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDG---VLVNPSDDFCIGKGDRGFILAESWADARVIWDYLVDEGRGGVLDE-RGNLKARSRSPEEEEALALETVGTSDAVALGPQAFVDSMLFSRTLIHCQKRLPDGEVPDAGLILEWARQFQVRHCIAPQRIASHCIASHR-----ATRRHVLRYFTMFVXXXXXXFL-SLVLCAYLCGVCACVYWSPVSLEDMPSSPPFTYSIHFLQDCFRRASIQSVISGVVLS---YSGVIGSLSWLFHFP-------GVRSSQRRDGGDQDSGLRGPCATPQPRPQHRCAPDRSQRVGRYHPCSCCCRVQRWLSRP*RGRTRRLSR**RK*RRNSQVRGARSSRPLRRRGLRRRSDVVRPPPGPNPGEPRPGRRTSPAIGRLVEEGVITGGQALVLATWRGLAVCRLRSREGHIERDRVWECYRGG*L*GRGDHLRPQDHGRERTARE*SFLWTNADYVQNASSFSSHRKKCF*RLQHHSSRREGDGEGG--------------------GSSPKERRSI*AFRYI-------VDICKALGSFIYKSVISSESMSSDSVSGRSRLDG-------------LQDDDDPIRQISLLYLXXXXXXXXVCFLQQVSSLSGEEACRRLLAL--RSAAKAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVNATNPARQAWREQGAGALLTVPLRRRILTARHLVGHVVVLGFPSRPSHLECFLRPLKGWAGGAGVGGGREMGGGGVPVVLVAQNLEQLESALAVVDRNGHVNTIGVYLLEGSPVSQAHLENAGVSTAKCVIVMKDPRSRMVAGGILGDPLRDAETLLSFIKMEDGLLTPNQHVVVELERSSNVRFLHTRTEARTLKAIAGLGGAGSGGAADEAHYLWPKYAAGMTYNASSVDSMFAQAFYRPSRRAI 3048
            L  + P +SHAEDM LSLQAIS+ THV+L+RRQG GPR+LVELVDPNAALHLQAAG+KHVVSSAQ+KLS+L QSCLCPGW+AVVANLLESRAA+P + LQQGSWLAEYYVGAKKTFYSVEFSPAF GV F DAVVHIFE FEL+L AVETK+  + G DG   V+VNP  D+ I KGDRGF+LAES ADARVIWDY+ ++G GG +DE  G LK R  SPEEEEALA+ET+GT+    +GP+ FVDSM+FSRTL+HCQK+LPDG  PD GL+LEWARQFQ  + ++ +++    +AS       AT      Y  +           S +  + L    +   W    +   P       +   L    RR        G        S VI         P       G R    R G  +  G                                            RG  +              V G     P                 G                 R                         +   E                             G  R   +       AD    AS                + R EG+  GG                    G  P +   +  +  +       VD      S    S +S  ++  + V G  R +G             +  D   I                   ++  SS S E+  +        S+  A+ P                                       A  +A N AR   R + +G  +T P             + ++    + PSHLECFLRPLKGW GGAG+GGGRE+GGGGVPVVLVA ++ +LESAL VVDR+G+VNT  VYL EGSPVS+  LENAGV TAK V+VMKD +S     G  GDPLRDAE L+SFIKMEDGLL+ +QHVVVELE S+NVRFLH R EA++L AI  LGGAG+GGAADEAHYLWPK+AAGMTYN+S VDSMF QAFYRPSR A+
Sbjct:  486 LADKAPPSSHAEDMGLSLQAISVMTHVELDRRQGCGPRLLVELVDPNAALHLQAAGIKHVVSSAQVKLSVLAQSCLCPGWAAVVANLLESRAALPAEVLQQGSWLAEYYVGAKKTFYSVEFSPAFTGVLFGDAVVHIFEYFELILVAVETKRHGQAGLDGEYNVVVNPGGDYRISKGDRGFLLAESQADARVIWDYMAEDGMGGAIDEGTGRLKERFSSPEEEEALAMETLGTAGVAGMGPETFVDSMVFSRTLLHCQKKLPDGHSPDTGLLLEWARQFQASNGMSDKKVVRKVLASAGLEPPVATTPGSRGYDALAAAVPTSRTATSKIFASALAKKPSNHQWGKQEMLARPGGSVAGDAAATLDPFGRRLRKAGARGGPGARERFLSDVIDEEDLSLVSPLLGRDEGGDRGGAGRAGRGEGDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDGKADG--------GEVVVGGDEGTPXXXXXXXXXXXXXXXXXGAE---------------RXXXXXXXXXXXXXXXXXXXXXXXXTIGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAARAGED-------ADRAGEASEAKGG-----------AGRDEGETGGGSEXXXXXXXXXXXXXGGFAVGVDPAKPAELTEYAPVPQPLEVSVDCLSRASSAGCSSALSDPAVPGEEV-GEERGNGRDGTEVFGNNGNHVVGDSSAIDSTRDAEGATTAASRAAPCIEIPSSTSLEQQRQEQQGAWPTSSGSASNPGGDGVGEQAGLLTVEEIMSELKAVEVSSLTRDDAYDRLLALCSAANTARLPTRPE-SGETITTPXXXXAAAVPTAATNAMM---DNAPSHLECFLRPLKGWTGGAGMGGGREVGGGGVPVVLVADDVSRLESALEVVDRHGYVNTSEVYLFEGSPVSRTDLENAGVRTAKAVLVMKDSKSTRFNYGGSGDPLRDAEALVSFIKMEDGLLSEDQHVVVELESSANVRFLHARAEAKSLSAIVALGGAGAGGAADEAHYLWPKFAAGMTYNSSFVDSMFGQAFYRPSRIAL 1517
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A6H5LKR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKR1_9PHAE)

HSP 1 Score: 535 bits (1377), Expect = 4.360e-164
Identity = 454/1229 (36.94%), Postives = 555/1229 (45.16%), Query Frame = 1 
Query:    1 LLHRTPRNSHAEDMDLSLQAISITTHVQLERRQGLGPRVLVELVDPNAALHLQAAGLKHVVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDG---VLVNPSDDFCIGKGDRGFILAESWADARVIWDYLVDEGRGGVLDE-RGNLKARSRSPEEEEALALETVGTSDAVALGPQAFVDSMLFSRTLIHCQKRLPDGEVPDAGLILEWARQFQVRHCIAPQRIASHCIASHR-----ATRRHVLRYFTMFVXXXXXXFL-SLVLCAYLCGVCACVYWSPVSLEDMPSSPPFTYSIHFLQDCFRRAS--------------IQSVISGVVLSYSGVIGSLSWLFHFPGVRSSQRRDGGDQDSGLRGPCATPQPRPQHRCAPDRSQR-------------------VGRYHPCSCCCRVQRWLSRP*RGRTRRLSR**RK*RRNSQVRGARSSRPLRRRGLRRRSDVVRPPPGPNPGEP--------------RPGRRTSPAIGRL-------------VEEGVITGGQALVLATWR-------GLAVCRLRSREGHIERDRVWECYRGG*L*GRG---------------------------DHLRPQ---DHGRERTARE*SF-LWTNADYVQNASSFSSHR---KKCF*RLQHHSSRREGDGEGGGSSPKERRSI*AFRYI----VDICKALGSFIYKSVISSESM----------SSDSVSGRSRLDGLQDDDDPIRQISLLYLXXXXXXXXVCFLQQVSSLSGEEACRRLLALRSAAKAA--PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVNATNPARQAWREQGAG------------------ALLTVPLR-------RRILTARHLVGHVVVLGFPSRPSHLECFLRPLKGWAGGAGVGGGREMGGGGVPVVLVAQNLEQLESALAVVDRNGHVNTIGVYLLEGSPVSQAHLENAGVSTAKCVIVMKDPRSRM----------------VAGGILGDPLRDAETLLSFIKME---------------DGLLTPNQ---------------------------------HVVVELERSSNVRFLHTRTEARTLKAIAGLGGAGSGGAADEAHYLWPKYAAGMTYNASSVDSMFAQAFYRPSR 3039
            L  + P +SHAEDM LSLQAIS+ THV+L+RRQG GPR+LVELVDPNAALHLQAAG+KHVVSSAQ+KLS+L QSCLCPGW+AVVANLLESRAA+P + LQQGSWLAEYYVGAKKTFYSVEFSPAF GV F DAVVHIFE FEL+L AVETK+  + G DG   V+VNP  D+ IGKGDRGF+LAES ADARVIWDY+ ++G GG +DE  G LK R  SPEEEEALA+ET+GT+    +GP+ FVDSM+FSRTL+HCQK+LPDG  PD GL+LEWARQFQ  + ++ +++    +AS       AT      Y  +           S +  + L    +   W    +   P       +   L    RR                +  VI    LS    +          G   + R +GG  D                                             G                                     +  GA        RG+     +     G   G+                  RR    I                 +E +   G+A              G      R               +GG     G                           D  +P    DH       E S    + A     +S+ S      ++      + S   E  G  G     + R+I   R      +   +A+ S       S E            SS S S R   DG+ +     +  SL           V    +VSSL+ + A   L+AL SAA  A  PP                                       AA NA     +   E G G                  +  T+ LR       RR+ TA+HLVGHVVV+GFP+RPSHLECFLRPLKGW G AG+GGGRE+GGG VPVVLVA ++  LESAL VVDR+G+VNT  VYL EGSPVS+  LENAGV TAK V+VMKD + R                 +AG    +   +AE L+  I +                   L P +                                 HVVVELE S+NVRFLH R EA +L AIAGLGGAGSGGAADEAHYLWPK+AAGMTYN+S VDSMF QAFYRPSR
Sbjct:  498 LADKAPPSSHAEDMGLSLQAISVMTHVELDRRQGCGPRLLVELVDPNAALHLQAAGIKHVVSSAQVKLSVLAQSCLCPGWAAVVANLLESRAALPAEVLQQGSWLAEYYVGAKKTFYSVEFSPAFTGVLFGDAVVHIFEYFELILVAVETKRLGQAGLDGEYNVVVNPGGDYRIGKGDRGFLLAESQADARVIWDYMAEDGMGGAIDEGTGRLKERFSSPEEEEALAMETLGTAGVAGMGPETFVDSMVFSRTLLHCQKKLPDGRSPDIGLLLEWARQFQASNGMSDKKVVKKVLASAGLEPPVATVPESAGYDALAAAVPTSRTATSKIFASALAKKPSNHRWDKQEMLGRPGGSVTGDAASTLGPSGRRLRKAGARGGPGARERFLSDVIDEEDLSIVSPLLGRDEGGDEGGTGRAGRGEGGGADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGIAXXXXXXXXXXXXXXXXXXXXXXXXXX-------EGEAGGAEGKFRGDERGISGDEVLA----GGTDGDEGTFSGEXXXXXXXXXXXRRXKRGIDXXXXXXXXXXXGAARADEDIDGAGEASXXXXXXXXXXLGIGXXXGEARGASKXXXXXXXXXXAKGGAGGXEGXXXXXXXXXXXXXXXXXXXFGGYAVGVDPAKPAELTDHAPVPLPLEFSVDCLSRASSAGCSSALSGPAVPGEEVGQEWGNGSDGTEVFGNNGNDVVGDSRAIDPTRDAEGAKIAASRAVPSIGIPPSTSLEQQPQEQQGVWPTSSGSASNRGG-DGVGE-----KAGSLTVEEIMSELRTV----EVSSLTRDGAYDHLVALCSAANTARLPPRPESSETIITPTTPTAAAVPT------------------AATNAVMDNARLVAEAGDGXXXXXXXXXXXXXXXXXXSTATMGLRASVTACRRRVSTAKHLVGHVVVVGFPARPSHLECFLRPLKGWTGRAGMGGGREVGGGCVPVVLVADDVSGLESALEVVDRHGYVNTSEVYLFEGSPVSRTDLENAGVRTAKAVLVMKDSKERCAYCKDLDLVELFSFASLAGPCSVNNSYNAERLVCAIAIPIFAILLISLVHDFFLSRALPPRRTVLVNWAWVRRRWAQRLFVAVSRLWYHYLPIRVHVVVELESSANVRFLHARAEANSLSAIAGLGGAGSGGAADEAHYLWPKFAAGMTYNSSFVDSMFGQAFYRPSR 1687
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A7R9UDC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.210e-39
Identity = 83/194 (42.78%), Postives = 119/194 (61.34%), Query Frame = 1 
Query:    1 LLHRTPRNSHAEDMDLSLQAISITTHVQLERRQGLGPRVLVELVDPNAALHLQAAGLKHVVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRGFILAESWADARVIWDYL 582
            L+++  + +H EDM + L+A+S+    Q +RR G GPRV  EL+ P A  HL+ AGL+HVV +  LKLS+L  SCLCPG S ++ NL+ S + +PP  L   SW  EYY+G  K  Y VEFSP    V F +A   IF+ FE+VL  V      E  +  V++NP   + I + D  F+LA++  DA++IW+Y+
Sbjct:  479 LVNKHSQETHVEDMGVVLRALSVANFCQEQRRNGSGPRVFTELIQPQATRHLRTAGLRHVVCTDALKLSLLAHSCLCPGLSTLLVNLMRSHSVMPPAVLLDASWYVEYYMGTMKQLYVVEFSPHLHHVRFDEAAALIFQEFEIVLLGVFNTSGVEGLEGRVVLNPGHKYSIRRDDYAFVLADTARDAQLIWEYV 672
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A7S3UVY3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY3_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 3.080e-17
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 1 
Query:  211 LGQSCLCPGWSAVVANLLESRAAIPPQALQQGS--------WLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRGFILAESWADARVIWDYLVDEG 594
            + Q  LCPGW A+V NL+ +  A PP               W  EY+ GA K   +V+FSP F G  F+     ++E FEL + AVE+    +     V++NP  D+ I   D+ F+LAE++A A  +W Y+   G
Sbjct:    1 MAQGLLCPGWPAIVLNLVRTHGAPPPGLFXXXXXXXXXXXLWYREYFQGASKQLLTVKFSPFFVGKTFSAVAAQVYETFELPVIAVESMASGQ-----VILNPDSDYIISPMDQAFVLAETYATAEQVWTYMEGPG 131
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A5B8MSS4_9CHLO (Calcium-activated potassium channel protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSS4_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 6.110e-14
Identity = 51/160 (31.87%), Postives = 85/160 (53.12%), Query Frame = 1 
Query:  112 RVLVELVDPNAALH----LQAAGLKHVVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRGFILAESWADARVIWDY 579
            +V+++++ P   LH    +Q + +  +V   ++K+S+LGQ+CLCPG+S ++ NL++S  ++PP+      W  EY  G    FY    S +FEG  F + V  I+ +FE V  AVE       GK  + V P D   +G   + +++A     A +I  Y
Sbjct:  419 QVILQIIRPENKLHFIASMQQSEIDQIVCINEIKMSMLGQNCLCPGFSTLIGNLIQSSDSVPPEDASSEPWQFEYCHGCGYEFYRTPLSTSFEGRTFTEIVDIIYTKFECVTFAVEVLD--REGKRKIAVAPLD-LIVGSKAKAYVIAPDSEVAAMISTY 575
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A7S1CL09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CL09_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.020e-13
Identity = 60/171 (35.09%), Postives = 86/171 (50.29%), Query Frame = 1 
Query:  115 VLVELVDPNAALHLQAAGLKHVVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGS--WLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFA----------ENGKDG-------VLVNPSDDFCIGKGDRGFILAESWADARVI 570
            V  +LV+P   +H   A   H+V   +LK+ IL +SCLCPG+S ++ANL+ S +      L      W+ EY  G  +  YS+E S AF G  F  A    F  F L L AVET++ A          E+G++        +L+NP D + I  GDRGF +A+    A  +
Sbjct:  414 VYCQLVNPLNKMHSSWAEWDHLVCIEELKMGILAKSCLCPGFSTLIANLITSSSDYDVATLDHVDKMWVEEYLSGYGQEVYSLEMSSAFVGKLFCVAANVCFCEFGLCLFAVETRRDARPRKTATPRAEDGEEELGEVPTRILINPKD-YTIRSGDRGFFIADDHEKAATV 583
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: L1JCR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCR4_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 2.830e-10
Identity = 57/206 (27.67%), Postives = 102/206 (49.51%), Query Frame = 1 
Query:   31 AEDMDLSLQAISITTHVQLERRQGLGPRVLVELVDPNAALHLQAAGLK----HVVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRG--FILAESWADARVIWDYLVDEGRGGVLDERGNLK 630
            AED    ++AISI  +V   RR G   R++++L+ P    HL  +        ++   ++K+++LG+SCLCPG+S +++NL+ S      +  +   W+ EY  G+ K  Y    SP+F G+ F +    ++      L AVE       G   V++NP+  + I        F++AE   DA  +  + ++E    + +E G+ +
Sbjct:  386 AEDSSNIIRAISIKKYVSA-RRPGEDIRIILQLLRPENRHHLNVSTCGGTDVQIICMDEIKMNLLGKSCLCPGFSTLISNLMISSGQSGDECER---WMTEYLSGSGKEIYCTTLSPSFGGMTFNEVCSQLYRVTGATLFAVEITDTL--GYSRVILNPAR-YRIPPNTSPVVFLIAEDVEDADSVRTFGLEEEEDNLSEELGSAQ 584
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A0V0Y862_TRIPS (Calcium-activated potassium channel slo-1 (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0Y862_TRIPS)

HSP 1 Score: 74.7 bits (182), Expect = 7.340e-10
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 1 
Query:  178 VVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRGFILAESWADARVIWDYLVDEGRGGVLDERGNLKARSRS 645
            VV  A+LKL I+ QSCL PG+S ++ANL   R+     ++    WL +Y  GA    Y+   S +F G+ F +    +F R +L+L A+E K   E+ +  +++NP  +  I    +GF +A+S  + +  + Y   +    VLD     K + R+
Sbjct:  238 VVCLAELKLGIIAQSCLAPGFSTMMANLFAMRSF--KTSMSTPGWLNDYLRGAGMEIYTESLSHSFVGMTFPETAELMFTRLKLLLLAIEIKD-DESLECNIIINPESNVIIKVNTQGFFIAQSADEVKRAF-YYCQKCHDDVLDVNLIKKCKCRN 389
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A0V1P5P8_9BILA (BK channel (Fragment) n=22 Tax=Trichinella TaxID=6333 RepID=A0A0V1P5P8_9BILA)

HSP 1 Score: 74.3 bits (181), Expect = 1.110e-9
Identity = 48/156 (30.77%), Postives = 81/156 (51.92%), Query Frame = 1 
Query:  178 VVSSAQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRGFILAESWADARVIWDYLVDEGRGGVLDERGNLKARSRS 645
            V+  A+LKL I+ QSCL PG+S ++ANL   R+     ++    WL +Y  GA    Y+   S +F G+ F +    +F R +L+L A+E K   E+ +  +++NP  +  I    +GF +A+S  + +  + Y   +    VLD     K + R+
Sbjct:  550 VICLAELKLGIIAQSCLAPGFSTMMANLFAMRSF--KTSMSTPGWLNDYLRGAGMEIYTESLSHSFVGMTFPETAELMFTRLKLLLLAIEIKD-DESLECNIIINPESNVIIKVNTQGFFIAQSADEVKRAF-YYCQKCHDDVLDVNLIKKCKCRN 701
[Close]
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Match: A0A813UED6_9BILA (BK channel n=6 Tax=Brachionus TaxID=10194 RepID=A0A813UED6_9BILA)

HSP 1 Score: 73.9 bits (180), Expect = 1.650e-9
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  181 VSSAQLKLSILGQSCLCPGWSAVVANLLESR---------AAIPPQALQQGSWLAEYYVGAKKTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLVNPSDDFCIGKGDRGFILAESWADARVIWDY 579
            V  A+LKL ++ QSCL PG+S+++ANL   R         A I  +   +  WLA Y  G+    Y+   SPAF G  F +A +  + + +L+L AVE+   +  G   + +NP +   +  G RGF +A S+ + +  + Y
Sbjct: 1167 VCIAELKLGLMAQSCLAPGFSSLMANLFAMRSYKEVFAAGANILYKKHTEDPWLAHYLRGSSMEMYTEYLSPAFTGKTFTEAAIICYTKLKLLLLAVESSNESGYGSH-LSINPGNTVRVESGTRGFFIAGSFEEIKRAYYY 1307
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10210.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKC7_ECTSI7.280e-18339.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LKR1_9PHAE4.360e-16436.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UDC3_9STRA6.210e-3942.78Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3UVY3_HETAK3.080e-1735.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5B8MSS4_9CHLO6.110e-1431.88Calcium-activated potassium channel protein n=1 Ta... [more]
A0A7S1CL09_9STRA2.020e-1335.09Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
L1JCR4_GUITC2.830e-1027.67Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A0V0Y862_TRIPS7.340e-1031.41Calcium-activated potassium channel slo-1 (Fragmen... [more]
A0A0V1P5P8_9BILA1.110e-930.77BK channel (Fragment) n=22 Tax=Trichinella TaxID=6... [more]
A0A813UED6_9BILA1.650e-932.39BK channel n=6 Tax=Brachionus TaxID=10194 RepID=A0... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10210contigP-canaliculata_contig10210:325..10257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.1
Seed ortholog evalue2.6e-111
Seed eggNOG ortholog2880.D7FKC7
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
Ec32 ortholog descriptionPotassium channel, calcium-activated, BK, alpha subunit
Ec32 orthologEc-05_005710.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons13
Model size3048
Cds size1308
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.5001144-UTR-P-canaliculata_contig10210:324..5521622815594.5001144-UTR-P-canaliculata_contig10210:324..552Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 325..552 -
1693494155.9871333-UTR-P-canaliculata_contig10210:324..5521693494155.9871333-UTR-P-canaliculata_contig10210:324..552Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 325..552 -
1622815594.515418-UTR-P-canaliculata_contig10210:1488..15911622815594.515418-UTR-P-canaliculata_contig10210:1488..1591Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 1489..1591 -
1693494156.0010064-UTR-P-canaliculata_contig10210:1488..15911693494156.0010064-UTR-P-canaliculata_contig10210:1488..1591Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 1489..1591 -
1622815594.5251606-UTR-P-canaliculata_contig10210:2754..28491622815594.5251606-UTR-P-canaliculata_contig10210:2754..2849Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 2755..2849 -
1693494156.0089533-UTR-P-canaliculata_contig10210:2754..28491693494156.0089533-UTR-P-canaliculata_contig10210:2754..2849Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 2755..2849 -
1622815594.5379944-UTR-P-canaliculata_contig10210:3361..35421622815594.5379944-UTR-P-canaliculata_contig10210:3361..3542Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 3362..3542 -
1693494156.0166016-UTR-P-canaliculata_contig10210:3361..35421693494156.0166016-UTR-P-canaliculata_contig10210:3361..3542Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 3362..3542 -
1622815594.5512125-UTR-P-canaliculata_contig10210:4241..49331622815594.5512125-UTR-P-canaliculata_contig10210:4241..4933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 4242..4933 -
1693494156.024324-UTR-P-canaliculata_contig10210:4241..49331693494156.024324-UTR-P-canaliculata_contig10210:4241..4933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 4242..4933 -
1622815594.5653756-UTR-P-canaliculata_contig10210:5060..54621622815594.5653756-UTR-P-canaliculata_contig10210:5060..5462Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 5061..5462 -
1693494156.0323806-UTR-P-canaliculata_contig10210:5060..54621693494156.0323806-UTR-P-canaliculata_contig10210:5060..5462Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 5061..5462 -
1622815594.6626287-UTR-P-canaliculata_contig10210:10218..102571622815594.6626287-UTR-P-canaliculata_contig10210:10218..10257Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 10219..10257 -
1693494156.1126626-UTR-P-canaliculata_contig10210:10218..102571693494156.1126626-UTR-P-canaliculata_contig10210:10218..10257Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10210 10219..10257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.5774522-CDS-P-canaliculata_contig10210:5462..58101622815594.5774522-CDS-P-canaliculata_contig10210:5462..5810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 5463..5810 -
1693494156.043042-CDS-P-canaliculata_contig10210:5462..58101693494156.043042-CDS-P-canaliculata_contig10210:5462..5810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 5463..5810 -
1622815594.5888999-CDS-P-canaliculata_contig10210:6056..62221622815594.5888999-CDS-P-canaliculata_contig10210:6056..6222Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 6057..6222 -
1693494156.0546284-CDS-P-canaliculata_contig10210:6056..62221693494156.0546284-CDS-P-canaliculata_contig10210:6056..6222Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 6057..6222 -
1622815594.5991642-CDS-P-canaliculata_contig10210:6268..63871622815594.5991642-CDS-P-canaliculata_contig10210:6268..6387Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 6269..6387 -
1693494156.0626354-CDS-P-canaliculata_contig10210:6268..63871693494156.0626354-CDS-P-canaliculata_contig10210:6268..6387Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 6269..6387 -
1622815594.60844-CDS-P-canaliculata_contig10210:6977..71391622815594.60844-CDS-P-canaliculata_contig10210:6977..7139Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 6978..7139 -
1693494156.0703611-CDS-P-canaliculata_contig10210:6977..71391693494156.0703611-CDS-P-canaliculata_contig10210:6977..7139Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 6978..7139 -
1622815594.6183174-CDS-P-canaliculata_contig10210:7729..78551622815594.6183174-CDS-P-canaliculata_contig10210:7729..7855Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 7730..7855 -
1693494156.078063-CDS-P-canaliculata_contig10210:7729..78551693494156.078063-CDS-P-canaliculata_contig10210:7729..7855Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 7730..7855 -
1622815594.630903-CDS-P-canaliculata_contig10210:8553..86881622815594.630903-CDS-P-canaliculata_contig10210:8553..8688Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 8554..8688 -
1693494156.0859632-CDS-P-canaliculata_contig10210:8553..86881693494156.0859632-CDS-P-canaliculata_contig10210:8553..8688Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 8554..8688 -
1622815594.6400783-CDS-P-canaliculata_contig10210:9087..92941622815594.6400783-CDS-P-canaliculata_contig10210:9087..9294Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 9088..9294 -
1693494156.094156-CDS-P-canaliculata_contig10210:9087..92941693494156.094156-CDS-P-canaliculata_contig10210:9087..9294Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 9088..9294 -
1622815594.651162-CDS-P-canaliculata_contig10210:10173..102181622815594.651162-CDS-P-canaliculata_contig10210:10173..10218Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 10174..10218 -
1693494156.10305-CDS-P-canaliculata_contig10210:10173..102181693494156.10305-CDS-P-canaliculata_contig10210:10173..10218Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10210 10174..10218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10210.335.1prot_P-canaliculata_contig10210.335.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10210 5463..10218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10210.335.1

>prot_P-canaliculata_contig10210.335.1 ID=prot_P-canaliculata_contig10210.335.1|Name=mRNA_P-canaliculata_contig10210.335.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=436bp
MDLSLQAISITTHVQLERRQGLGPRVLVELVDPNAALHLQAAGLKHVVSS
AQLKLSILGQSCLCPGWSAVVANLLESRAAIPPQALQQGSWLAEYYVGAK
KTFYSVEFSPAFEGVFFADAVVHIFERFELVLAAVETKQFAENGKDGVLV
NPSDDFCIGKGDRGFILAESWADARVIWDYLVDEGRGGVLDERGNLKARS
RSPEEEEALALETVGTSDAVALGPQAFVDSMLFSRTLIHCQKRLPDGEVP
DAGLILEWARQFQVRHCIAPQRIASHCIASHRATRRHVLRYFTMFVLRYF
AIFLSLVLCAYLCGVCACVYWSPVSLEDMPSSPPFTYSIHFLQDCFRRAS
IQSVISGVVLSYSGVIGSLSWLFHFPGVRSSQRRDGGDQDSGLRGPCATP
QPRPQHRCAPDRSQRVGRYHPCSCCCRVQRWLSRP*
back to top

mRNA from alignment at P-canaliculata_contig10210:325..10257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10210.335.1 ID=mRNA_P-canaliculata_contig10210.335.1|Name=mRNA_P-canaliculata_contig10210.335.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9933bp|location=Sequence derived from alignment at P-canaliculata_contig10210:325..10257- (Pelvetia canaliculata dioecious)
CTGCTTCACAGGACTCCTAGGAATTCCCACGCTGAAGACATGGACCTGTC
GCTCCAGGCCATCTCCATCACGACTCACGTGCAGGTAGATATCCAACACA
AAAACACAGCATTGCTTTACGAGGGCCCACACTACACACACGATTTTTTC
TTTTCCATCCCCCCCCCCCTACGCGACTCTCGGTGTGACCGCCGTAACTT
TAACTCGCCGATTGCGGTCGATTCGGTTCTTGTTTAGACATAATCCTCAT
TTGCCTTACAGTAGAACCGCCTATGGGCGTTTCGAAGATTTCAATTGATT
ACTCTGGTCGTTTAAGAAAAATATGAACGCGTATGTTGTTGTTTTGTCTA
CTGTAGTCCGATTTGACTTTCTTTTGTTTTCTAAAAGTCCAGACGTTTCC
TCGTCAATTTCACATCTTGGACTCGTCCCCCCCCCCCCCCCCCCCCCACC
CCCCCCCCCCGCCCCCCTCACCCCCGTCCCGCTCATCCGAAAGATGACGC
GAGCACCACCACNNNNNNNNNNTACTTTTTTCCGTTTTTCCTTTTTTTTT
TTTTTTAAAAGTCCAACCGTTTCCCCTTCAATTTCACACCTTGGCCCCGC
CCCCCCCCCCCCCCCACACACACACCCAATGCGGTCCCATTGGCACTAGT
CTCCTATGACAAGAATCGATCTGAACCATCATCATAGGTTAGGTGATTAC
GCCGCGCTATGATCAAATCGATCCCGGCTACTTGCTTAAAACCCTGTGTC
AGTAGTAACGTATTTTGTATTTTTTTGAGCCTTTTCGAAACCATGGAACG
GATGGTGCGACAACTTGCAAACAAAACGTCAGTCGGGTTCGGCCCTTATA
CATCAGTCATTCGCTGCTACGTACCCTTCGTGTCCCAGGGAATTTTTTGC
AGCATCCCCCCCTGCCCCCTCACCCCCCCTCTATATAATATCATGTAACA
CTACAAACCGCAGCTTGAGAGGAGGCAGGGCCTCGGCCCGCGGGTCCTGG
TGGAGCTGGTGGACCCAAACGCTGCCCTCCACCTGCAGGCCGCTGGCCTC
AAGCATGTCGTCAGCAGCGCCCAGTTGAAGCTGAGCATACTCGGGCAGTC
ATGCCTCTGTCCGGGGTGGTCCGCGGTGGTGGCCAACCTGTTGGAGTCCA
GGGCTGCTATCCCTCCGCAGGTGGGCTGATTTTTTTGAGGGATTGGTTTG
TGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGTGTGTGTG
TGTATGATGTATGTGTGTGTCTGTCTGTGTGGCTGTGCGTGTATCGCATT
CTTTCTTTTTTTTAATGGGAGGGGGGAGTGGAGGAGACATGGTGAGCTCC
CGATATTCATGCTTTATCCGAAGTTCACAAAAATAGTTTATTTGTTCAGT
TTTTTGTCTATATTTTTGCGATATAAAAAAACACACAAAAGAAATCCCCT
TGGATCACCGCAAAGCCAAACTCCGCTTTGGTGCCCGTGTTCTCCAGTGT
TCTTTTTTTTTTCCCATGGAACGTATAACTGTTGTCTCTTACACTATGTG
TTTCATATTGTTTTTGCAGGCGTTGCAGCAGGGGTCTTGGCTGGCGGAGT
ACTACGTCGGGGCAAAGAAGACGTTCTACAGCGTGGAGTTTTCCCCTGCC
TTCGAAGGCGTTTTTTTCGCGGACGCCGTCGTGCACATATTCGAGCGCTT
CGAGGTGGGTCACACCCCATGAAAAGCCCTGTAGTTTCCAACGTCTCAAG
TAGCGACGACGAAAGCCTTTTGGCGGTGAGCCACACGTGGGACTCCCCTG
TTTCCTATTTCTCGATCCGACCGGAGCCACTCACTATTCGTATCCCCGCT
CGTTGTATCCGGCACAGGTATAGGAAACACATGTGAGACAAAGTGTTTAC
TCGGGGTGCAAGTTTGGTCACTGTTTTCGAAAGAGTCAGATCGGCCTTTT
AGAGGGGGGGGGCGGGTGGGGCTAGTTATGCTCGTTGTCCTATGGGCTAA
GTTGAACCAAGCGCACGTTTTCGACGACGATGTGTTATCTCTGCATTGCA
TGTACGTGCCTTGGAAGAGCTGTATCGACCCAGGCTGGCGTCGAATCGAG
GAGAACCTGTCTCGTTCATACTGTACCAGATGCCGGTTCAAGGCGAATGC
CGAATACTCTTCTATCGTTAAGTCGGCCTGTCTGCCTGCCGATCTTAACC
CCGCCGAGAAAAAACGCCTCCACAAAAACGTAGCAGTGCAATACAGTTTA
TGCCATAGAGTCCAACCCGTGATTTCAGAACGCCCCCCTCCTCCCCCCCC
AGCCCCCTTCGTTGTGAATGCCTCCTTACCTCACGATGAATGCCTCCTTA
TCTCACGATGAATGCCTCCTTATCTCACGATGAATGCCTCCTCCGCGTAC
AGCTTGTGCTGGCGGCGGTTGAGACCAAGCAGTTCGCGGAAAACGGCAAG
GACGGGGTGCTTGTGAACCCTTCGGACGACTTCTGCATCGGAAAGGGCGA
TCGCGGATTCATTCTGGCGGAGTCCTGGGTGAGCCAGAGTATTGGGGTTT
GGGGTAGTCTGCTGCTGCTGCTGTGTGTATGTAGTCATAACTTACAGCAG
ATTGAGCATCAAACGGCTGTGGTTGCCATTCCTGCCTTTGATCGGCTGAA
GAGGGAAAAATATTTTTGTCCGTCCCCGTGGGTACCTCTGAAAAATTCGT
CTCGCGAGACAGATTCGACTGTTTAGTCCGAGGCAATCCACACATTCTCC
GCACCCAGGCGACTCTGGTGTACATTGATAGCTTGTTTCTAGTTACATTA
CAGTTTTTACTGTTGATGATGATGTTGGTTTCTTACAAGGCGGTGATTCG
GTTTGGTTCGGTCCTGTTCGGTCAGGCTCGGCGCGGCCCCGTGCGGGTCG
GTGCGATCCCGCGCGATACGTCCGTGCGTCATGCGCGTTAGTCAGAAGCT
CTGTGTTGGGCCGCTTGGTACAGATCCTTCGTAAATGTCATGAGCGTACA
TGTACCTGTAATGTTCCTGCAATGTTCCTGCAATGTGCCTGCCATGCAAC
GTATCTGCCACGCACCCTTGGTCTGTCCGTCGTAACCAAAACCCGTTGCC
TCCTTCTCTCTCCCGCAGGCCGACGCGCGCGTGATCTGGGATTACTTGGT
AGATGAAGGTAGGGGGGGAGTGCTAGACGAGAGAGGCAACCTGAAGGCAA
GGTCAAGGAGCCCCGAAGAGGAAGAAGCGCTCGCGCTGGAGACCGTGGGC
ACGTCGGACGCGGTGGCCTTGGGGCCCCAGGTACGCCTCCAAAGACGAAA
CCCATTTGTAATATCGTACTGTACTTCGTCCAATGTATGTACACAGGACT
ATTAATATCTTGTGAGATTTGGTAACAAGAAAATTATTGGAAAGCTGATG
AAAGTCTGATACAAGAAAAAATGGTGAAAGGGTCGGTAAAAATAGATCAA
GTAATGAAAAAGCTTTTTTTTGAAGCCTTTAAGTAAAGGTACTGTGTGAC
TTGTATCCTATTCTCGAATAGTACTATTAATAATATGGAGCTGCCAAGAC
TTGCATTGTCCTCGCCTACGCGTACGACCAGTAGATACTTTGTTGCTTAA
TACTATTGATAGGTAGACGTTTGCCCTGTTATGTTATTATTAATTGTGAT
AGTAGGTGCAATATAGCCCTACTCTCTACGCAGTCCACAATAAACAAAAT
TAGGTACGTAGTAGCAAGTAGACTACGACGTAAATTACAAAATCGGTCGC
ACTTTATCATTGGCACCAATCAAGAGCGGCACCAATACGAGACTCTTGTA
TATACAAGTTACTTGATGCAAGTATGTCCTGTAATATATATTAACGTTGG
GTTTTGCCCTCTGTGGGTAGGCGTTCGTGGACAGCATGCTGTTCAGCCGG
ACGCTAATCCACTGCCAGAAGAGGTTGCCGGACGGGGAGGTGCCCGACGC
AGGCCTCATTCTCGAGTGGGCCAGGCAGTTCCAGGTGAGGTGCTAACTCT
AATGTAATAATATACTTGTGGACTTTGCACCGAAGACACTGCATCGCACC
GCAACGCATCGCATCGCATTGCATCGCATCGCATCGCGCCACTAGAAGAC
ATGTCTTGAGATATTTTACTATGTTTGTCTTGAGATATTTCGCCATATTT
CTTTCTTTGGTTTTGTGTGCGTATTTGTGTGGTGTGTGTGCGTGTGTGTA
TGTGCCACCTCTCTCTTTTCAACTCCGTCAGCATGTACTAATATAATAAG
GAGATGTATAGGCTCTACAAATACGTAGAAAAGCATGGAGGTGCGTTTTT
TTTTTGTCTCGTCGTATCTACTGATTTTTGTTCGCCGCAGACATCTTTAG
GATGGGTAGGTGGGAGGAAGGAGGGCGAGGGATGGGGGGATTCTTAGAGA
TTTCACGTGGTAAACTTTGCGCGTGCCGAAAAAGGGGATGGCGGTAGTGG
TCCCCTGTCTCCTTGGAGGATATGCCCTCCTCCCCGCCCTTCACATACTC
AATACACTTCTTACAGGATTGCTTTAGACGCGCATCAATACAGTCAGTGA
TTTCCGGCGTGGTCCTCTCCTACTCTGGGGTGATTGGCTCGCTGTCTTGG
CTGTTTCACTTCCCAGGAGTCCGAAGCTCTCAGCGACGAGATGGTGGTGA
CCAGGATTCTGGCCTCCGCGGGCCTTGCGCTACCCCACAACCTCGTCCTC
AGCACCGATGCGCCCCTGATCGGTCGCAACGTGTCGGCCGCTACCACCCC
TGCAGCTGCTGCTGCCGCGTTCAACGGTGGCTATCACGACCATGACGAGG
AAGAACAAGACGGTTATCACGATGATGAAGAAAATAACGGCGAAATAGTC
AAGTCCGCGGCGCCCGATCTTCTCGACCTCTCCGCCGTCGGGGACTCCGC
CGCAGGAGCGACGTCGTCCGCCCGCCACCCGGCCCCAACCCCGGCGAGCC
AAGGCCAGGCCGCCGAACAAGTCCCGCAATCGGAAGGCTTGTCGAGGAAG
GTGTCATCACAGGAGGACAAGCCCTCGTCCTTGCCACATGGCGCGGTCTC
GCGGTCTGCCGTCTCCGCTCCCGAGAGGGCCACATCGAGCGCGACCGGGT
TTGGGAGTGTTACCGGGGGGGATGACTTTAAGGGCGAGGAGATCATCTCC
GCCCTCAGGACCATGGACGTGAGAGGACTGCGCGTGAATGAAGTTTTGTT
TTGAGGGGGGGGGATTGAAATGATGATTCGATTTTGTGTACCGCAGTGGC
GTGTATCAAGCACGCCTGTAGGATCGATCGGTTCGTCCTAGCCGCTTGCG
ATCGTTATAAAATCGTTTGAACAGTTATGGACCAATGCCGACTACGTTCA
AAACGCCTCAAGTTTCTCCAGCCATCGCAAAAAATGTTTTTGACGCTTAC
AGCATCATTCTTCCCGAAGGGAGGGGGATGGGGAGGGAGGGGGTAGCTCC
CCGAAGGAGAGGCGTTCTATCTAAGCATTTCGGTATATCGTTGATATTTG
CAAGGCACTAGGGTCATTTATTTACAAGAGCGTCATTAGCAGCGAAAGCA
TGAGCAGCGATAGCGTCAGCGGCCGTAGCAGGCTTGATGGCCTCCAAGAT
GATGATGATCCTATCAGACAAATTTCCCTTTTATATCTTCTGTTTATACT
AATTATTTTGCTTGTTTGTTTTTTGCAACAGGTGTCTTCCCTCTCGGGCG
AGGAGGCCTGCCGCCGTCTCCTGGCGCTCCGCTCGGCCGCGAAGGCCGCT
CCGCCCCCGTCCCCCGCCCCCCGTCCCGCCGCCAATTCCTTCTCCCCCTC
GGCCAACACTGAAAAAAACACGAAAGCGAACACCAACACCACCGCCACCC
CGACCGCGGCGCCGTCTGCCACCGCCGCTGTCAACGCTACCAACCCCGCG
AGACAGGCCTGGCGCGAACAAGGGGCAGGTGCCTTGTTGACTGTTCCGTT
GCGGCGGAGGATCCTCACGGCGCGCCACTTGGTCGGACATGTGGTGGTGC
TTGGTTTCCCGTCAAGGTAATATGTAGGTTGAGCGACGTTCATGCGTAGC
TTGCTCTACGCATGTAGCATGCGTGTGTATACTGTGTTATAGTATGAATG
TGACACAAGGTATGTTTCGCTTTGCTTATTTATGGATTCCTACATAGCTC
GTAGGCGTTTCGATGCCGTGAGACTGGACCCTGGGTCTTGGCCAAGCACC
TGGCTGATCCTGGGGCAGAGGGTTTGGATATGAGTGTGCGGGGGGTCGAT
GAATCTGTCCCCTGATTTCGGTGGATGGAATTACATTTTAACAGCACTTC
CTTGCTAGGATAGGACTTCCCAGCCCCTTGCCTGATGGGCCATCGCGCCT
CGACCACAAAATTTACCCCCACCAGGGAATTTGTTTATCTTTCGTTCGTC
CCATACACGGATTGTTGTGACCCTCCCCGTTCCCTTCACACGAAGTCGCT
CTTGGAGAGGACGGGATGCCGCACCGATCTTGCTAAAAAGTCATGGCTGG
AGGCCTGAACCGCAGCCGTCTCTTATGGCAGTGATTTATAGCCCGAAATG
GTGCAAACCGTGTGCAGCAGGCCAACGTCATGTACTATTATACCTCTGCT
GTAAGGCTACTCACCAGCACTAAGCACGCAATCTGGCCGTATGTACTAGA
GCCAAATCCGCGCGAGGATGACATCTTCCCCGCGACCCTGCGTGCTGCGC
GTCCTCCCCCACCAGACCCTCGCACCTGGAGTGCTTCCTGAGGCCGCTCA
AGGGCTGGGCCGGCGGCGCCGGCGTGGGTGGCGGCAGGGAGATGGGCGGC
GGAGGCGTTCCGGTGGTTCTCGTGGCCCAGAACCTGGAGCAGCTCGAGAG
CGCCCTCGCTGTAGTGGACCGCAACGGACACGTCAACACTATTGGGGTAT
GTGTTTGCGTTTCTTTATTAAATAAGTGTGTGTGTATGTGCGTGTTTTGT
CGATGTTCAATGTATGAGAAGGACAAAGATAAGTCAGAAATGCTCTATGC
GGAATAAAGGACTAGGGGGTCTTGACTACTCTAGACTCTGCCTTGGTTTT
CTACTTGTTGGCGTTTTCATTGGGGGGGTGTGACGAGGGCGAGGAGAGGA
GGGCGGCACGGGGCGGGGGAGGGGGAGGGGGTGCTCTAGAGGTGTGGCTG
ACAAGGGTAGAACAGTTTCCTGTTTTGCCATTTGATAGATTCTAACCAGC
GACGTGCGAAATCGACGGCAATCCTTGGAAAGGCGTTAAAGCCTCTTGCT
GAAGGCGACGCACCTCTGTTGTAACACCCGATTTTCGGACTTTTTATTTT
TCGTTGAACGAAGTGCCAGAATCTGTTTTTTGTTTCCTAATTTTATTTCA
TTTTGAGTTGATTTTTTCTGTCGCCTTATTGTTGTTGTTGTTCCTTTGAA
TATCAAAGGTGTACCTCCTGGAAGGGTCACCTGTGAGTCAGGCTCATCTC
GAGAACGCAGGCGTCAGCACCGCCAAGTGCGTCATCGTCATGAAGGACCC
CAGGTACATTGTACGTGCCATATTGTACCATGCTACACTGTAGACTACGG
CAGAAAACCCCGGCGTTCTCGGAAGCGCTTTGTCGTGATTATACGAATAT
TTATAGCGATCTATGGATATCTATTAGTGTCCTCCTGCACCCCTCCCCCC
CTTCCGACTGGGTTCAAGTGTAGAAGTTCCCAAGAAAGGGACCGGTGCCC
CCATACCTTTTCCTCTCTTTTTTTTCAGTCTTCTTTTAGTGAAGACCTCG
CCGACATCTTTCGCAATATATCGGGTGCATCTCGGCCATCGTTCTCCAAG
AAAACGGGAAAGGGAGGAGAGGGGAGGGGAGGCGAGTTTTTGGTCCCCGG
GGTGAACAACAAACTAAAATAATATCTTTGCATCGCCCACGATGTCTTCC
CAAATACAGTCGATAGTGTACGAAAGAGTACGTACTGGTAGATGGCTTGA
ACCGTCTTTTTAGAAACTCCTACGCGCGCTTCTTTTTCGCGTGACGATCA
CTAGTGTGTAGTGTGTTGTGTGTAGTGTGTAGTGTGTAATGTGTAGTGTT
CAGAGTGTATTGTATAATGTTAAGAGTTCTTAAGTCATCAGCTGAGCTAA
ATCCTCACGAGAGTGTACTTAGCTCAGTGGGTATAAGCTCTTAATAAAAG
CTGAACCTTCTGTTGACGGTACAACCAATACTAGTGACTTAACCGATCGG
TTGACTGTTGTTGTCAGGCGATAAAAATAGGAGTTAATAACTTTATCCAC
CGGGCTAAACACCGAGCTCAATCCTGACGAGAGTGTACTTGGCTCAGTGT
GTAGGTTATAAACTCTTACAAAAAGTTAAACGGGGGGGGGAGGCCGGTTG
ATAACTTCTGAGGTCATCCTAGAGTTGCCATCCCTGTGATCAGTGCGGTC
ATTCGAAGCCCGCCTCTCCAGGGCAATGTGCCATAAGCGAACGAGGTATT
GAGTTATTTTCGTCCCAATTTCATTTAGAAAAAATGTCGCCAACGAGGAC
GCCGAGGATCGAACCCAAGGTTAGCTTTTGTCAAGAATTTATCCACTGAT
ACTGTTGCATTCACATATCTCTTTACGAACTCTCAACACCTCACGTGTGG
CATGCGTTACGCATTTTTCTTCGCTCCCTTTTTCGGGGGGGGGGTGGCGG
GTGGCGGGTGCATCAGGAGTCGCATGGTGGCGGGGGGCATCCTAGGCGAT
CCTCTCCGCGACGCCGAGACGTTGCTGTCTTTCATCAAAATGGAAGACGG
CCTGCTCACCCCCAACCAGGTACGAGCACCCAAACGGTTCTCTGTACTCG
TAGCTTGTAGTATTGGTTGATCAAGATTTTCGGGCTGGTATTTTACAACA
GAACGTTTCGGTCGGTGTGGTTGAGAGGCTGTAGTCCGTGCGGACTCCAC
GGATATTGCCGTGGGGCGAGGTACAGTTGTCGTTTCAGCTACTTCAAAAG
CAGTTTATCTACGAGTTTAAATATTCAACTGAGTTGTGATTTCAATTTCG
CGGGCAAAATAATGCTTTTCGAGGCATATTCATGTTTTCATATATATAAT
AGGTGTTTTTGGACGAAATGGGTGAAGCCATCCACACCAGCGCGCGTGTG
TTGATTGAACGACGCTGTGCGTACATTGTCGGAATGTGGCGACATTCTAG
ATGATAAGAACGCCGACATAGTCGAAACCCTGGCTAACTCCCCCGCGCTG
ATGATTCGACGAAAGTGGTGGTGGTGGGGGGAGAATGCCATAGTTATCTC
CCCGAGCTCACGGCCGACGTTATCGAAACATAGCCTTCCAGGGATGTGGC
GACCCACCGTCCTCTTGAAACGTCATCCCCGGCTAGTATGCCTTGGAGAT
GGTTCAAGTTTGGGAATCCTCGACATACATCTAGCCCTCGCTGCTGTAGA
CATGCGGATAGAGTACACGAGAAATCGCATCATTATTGCCATAGGGCTAG
AACGAGAAGTGGACATACAATAGAGCTTTTAGTATTCTATATTCACGGGG
TATTAAGTAAAATATATGTCTTACCGGGCTTATAAGAGTATATTGAAAGT
TTTAAATATCCCGCTTTCTCATACATCATAGAGCATCTTGTTGTGATTCG
TATTATCCCGTTACTCGCGAAAATAATATCTGTATTTTTTGTTGTGTTTT
TTTGCTGTCGTCTCTCCCCTCCCCCACCCCGTTTTCTGTCGTTTGTGGGT
CGCAGCACGTCGTGGTCGAGCTTGAGCGCTCATCGAACGTCCGCTTCCTT
CACACGCGAACGGAGGCTAGGACCCTCAAAGCCATCGCGGGGCTCGGCGG
AGCGGGGTCCGGCGGCGCCGCGGACGAAGCTCACTACCTGTGGCCCAAAT
ATGCCGCAGGAATGACGTACAATGCCTCCTCGGTCGACTCCATGTTCGCC
CAGGCCTTTTACCGTCCCTCGAGGCGAGCAATT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10210:325..10257-

>mRNA_P-canaliculata_contig10210.335.1 ID=mRNA_P-canaliculata_contig10210.335.1|Name=mRNA_P-canaliculata_contig10210.335.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2616bp|location=Sequence derived from alignment at P-canaliculata_contig10210:325..10257- (Pelvetia canaliculata dioecious)
ATGGACCTGTCGCTCCAGGCCATCTCCATCACGACTCACGTGCAGATGGA
CCTGTCGCTCCAGGCCATCTCCATCACGACTCACGTGCAGCTTGAGAGGA
GGCAGGGCCTCGGCCCGCGGGTCCTGGTGGAGCTGGTGGACCCAAACGCT
GCCCTCCACCTGCAGGCCGCTGGCCTCAAGCATGTCGTCAGCAGCGCCCA
GTTGAAGCTGAGCATACTCGGGCAGTCATGCCTCTGTCCGGGGTGGTCCG
CGGTGGTGGCCAACCTGTTGGAGTCCAGGGCTGCTATCCCTCCGCAGCTT
GAGAGGAGGCAGGGCCTCGGCCCGCGGGTCCTGGTGGAGCTGGTGGACCC
AAACGCTGCCCTCCACCTGCAGGCCGCTGGCCTCAAGCATGTCGTCAGCA
GCGCCCAGTTGAAGCTGAGCATACTCGGGCAGTCATGCCTCTGTCCGGGG
TGGTCCGCGGTGGTGGCCAACCTGTTGGAGTCCAGGGCTGCTATCCCTCC
GCAGGCGTTGCAGCAGGGGTCTTGGCTGGCGGAGTACTACGTCGGGGCAA
AGAAGACGTTCTACAGCGTGGAGTTTTCCCCTGCCTTCGAAGGCGTTTTT
TTCGCGGACGCCGTCGTGCACATATTCGAGCGCTTCGAGGCGTTGCAGCA
GGGGTCTTGGCTGGCGGAGTACTACGTCGGGGCAAAGAAGACGTTCTACA
GCGTGGAGTTTTCCCCTGCCTTCGAAGGCGTTTTTTTCGCGGACGCCGTC
GTGCACATATTCGAGCGCTTCGAGCTTGTGCTGGCGGCGGTTGAGACCAA
GCAGTTCGCGGAAAACGGCAAGGACGGGGTGCTTGTGAACCCTTCGGACG
ACTTCTGCATCGGAAAGGGCGATCGCGGATTCATTCTGGCGGAGTCCTGG
CTTGTGCTGGCGGCGGTTGAGACCAAGCAGTTCGCGGAAAACGGCAAGGA
CGGGGTGCTTGTGAACCCTTCGGACGACTTCTGCATCGGAAAGGGCGATC
GCGGATTCATTCTGGCGGAGTCCTGGGCCGACGCGCGCGTGATCTGGGAT
TACTTGGTAGATGAAGGTAGGGGGGGAGTGCTAGACGAGAGAGGCAACCT
GAAGGCAAGGTCAAGGAGCCCCGAAGAGGAAGAAGCGCTCGCGCTGGAGA
CCGTGGGCACGTCGGACGCGGTGGCCTTGGGGCCCCAGGCCGACGCGCGC
GTGATCTGGGATTACTTGGTAGATGAAGGTAGGGGGGGAGTGCTAGACGA
GAGAGGCAACCTGAAGGCAAGGTCAAGGAGCCCCGAAGAGGAAGAAGCGC
TCGCGCTGGAGACCGTGGGCACGTCGGACGCGGTGGCCTTGGGGCCCCAG
GCGTTCGTGGACAGCATGCTGTTCAGCCGGACGCTAATCCACTGCCAGAA
GAGGTTGCCGGACGGGGAGGTGCCCGACGCAGGCCTCATTCTCGAGTGGG
CCAGGCAGTTCCAGGTGAGGCGTTCGTGGACAGCATGCTGTTCAGCCGGA
CGCTAATCCACTGCCAGAAGAGGTTGCCGGACGGGGAGGTGCCCGACGCA
GGCCTCATTCTCGAGTGGGCCAGGCAGTTCCAGGTGAGACACTGCATCGC
ACCGCAACGCATCGCATCGCATTGCATCGCATCGCATCGCGCCACTAGAA
GACATGTCTTGAGATATTTTACTATGTTTGTCTTGAGATATTTCGCCATA
TTTCTTTCTTTGGTTTTGTGTGCGTATTTGTGTGGTGTGTGTGCGTGTGT
GTATACACTGCATCGCACCGCAACGCATCGCATCGCATTGCATCGCATCG
CATCGCGCCACTAGAAGACATGTCTTGAGATATTTTACTATGTTTGTCTT
GAGATATTTCGCCATATTTCTTTCTTTGGTTTTGTGTGCGTATTTGTGTG
GTGTGTGTGCGTGTGTGTATTGGTCCCCTGTCTCCTTGGAGGATATGCCC
TCCTCCCCGCCCTTCACATACTCAATACACTTCTTACAGGATTGCTTTAG
ACGCGCATCAATACAGTCAGTGATTTCCGGCGTGGTCCTCTCCTACTCTG
GGGTGATTGGCTCGCTGTCTTGGCTGTTTCACTTCCCAGGAGTCCGAAGC
TCTCAGCGACGAGATGGTGGTGACCAGGATTCTGGCCTCCGCGGGCCTTG
CGCTACCCCACAACCTCGTCCTCAGCACCGATGCGCCCCTGATCGGTCGC
AACGTGTCGGCCGCTACCACCCCTGCAGCTGCTGCTGCCGCGTTCAACGG
TGGCTATCACGACCATGATGGTCCCCTGTCTCCTTGGAGGATATGCCCTC
CTCCCCGCCCTTCACATACTCAATACACTTCTTACAGGATTGCTTTAGAC
GCGCATCAATACAGTCAGTGATTTCCGGCGTGGTCCTCTCCTACTCTGGG
GTGATTGGCTCGCTGTCTTGGCTGTTTCACTTCCCAGGAGTCCGAAGCTC
TCAGCGACGAGATGGTGGTGACCAGGATTCTGGCCTCCGCGGGCCTTGCG
CTACCCCACAACCTCGTCCTCAGCACCGATGCGCCCCTGATCGGTCGCAA
CGTGTCGGCCGCTACCACCCCTGCAGCTGCTGCTGCCGCGTTCAACGGTG
GCTATCACGACCATGA
back to top