mRNA_P-canaliculata_contig1021.328.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1021.328.1
Unique NamemRNA_P-canaliculata_contig1021.328.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: M2ZXP8_PSEFD (Uncharacterized protein n=4 Tax=Pseudocercospora TaxID=131324 RepID=M2ZXP8_PSEFD)

HSP 1 Score: 276 bits (707), Expect = 1.880e-89
Identity = 147/263 (55.89%), Postives = 185/263 (70.34%), Query Frame = 2
Query:  104 VARQDDGKTSFDLNFSGQQGDTATVEESAQASDEA------------------KESGSTSSDTXXXXXXXXXXXXXXXXXSAESTKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            + R+DD  TS+DL+FS +QG+TAT E   +A+ +A                   ++      T     XXXXX        ++ TKTFDARLPAGG+ MITP A   S YYKIKDY+TFAWNYTSLS TP+ VD+LASCS NQ TYTIA N SV+ T S++WDTG +QA+  +PLLTE YTLIIHD++KDV A+P AGYL  +QQFTFGMY+PQPYTP++++VCATCN A+S  ER+TL  +  +T +TVL+FGWFTGVAGLW
Sbjct:   37 LLRRDDQSTSYDLSFSAKQGNTATTESDTKATGDATTTRDSNDXXXXXXXXXXSKTSEGDKTTGTAKNXXXXXAKSSNKSGSQETKTFDARLPAGGVSMITPNAQSTS-YYKIKDYITFAWNYTSLSVTPSRVDILASCSKNQETYTIALNQSVQATQSVIWDTGAFQASATVPLLTETYTLIIHDAAKDVSATPQAGYLATYQQFTFGMYSPQPYTPMSEYVCATCNSAMSLAERQTLIGLLTLTGITVLTFGWFTGVAGLW 298          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A3M7EGW0_HORWE (Uncharacterized protein n=15 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7EGW0_HORWE)

HSP 1 Score: 276 bits (706), Expect = 5.080e-89
Identity = 175/316 (55.38%), Postives = 209/316 (66.14%), Query Frame = 2
Query:    2 ATAMAWPSEWDPRPLLARRDPVPTXXXXXXXAMLVARQDDGKTS--FDLNFSGQQGDTATVEES-----------------------------AQASDEAKESGSTSSDTXXXXXXXXXXXXXXXXXSAESTKTFDARLPAGGIQMITPAATLFSQYYKI-----KDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEE-TNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            A + AWPS W P   + R               LV RQD   +S  FDL+F+GQQG+TAT E S                              + + E   + S +  +XXXXXXXXXXXXXXXXX   ST + D RLPAGGI MITP A L S YYKI     K++VTFAWNYTSLS TP+AVDVLASCSLN  TYTIA N+S+ + T S+VWDTG YQ +  +PLLTE YTLIIHD++KDV A+  AG+LG+W QF FGMYTPQPYTPL+D+VCATCNGA+S++ER+TLGFM GM  +TVL+FGWFTG AGLW
Sbjct:   15 AASSAWPSAWQPLEAVKRE-----------ITPLVIRQDSDSSSSKFDLSFTGQQGNTATTEYSXXXXXXXXXXXXXXXXXXXXXGDSKSTATGEKTGEKXGASSATDSSXXXXXXXXXXXXXXXXXXXASTTSIDPRLPAGGISMITPNA-LTSHYYKIGTEAGKNFVTFAWNYTSLSVTPSAVDVLASCSLNSQTYTIATNLSISDPTQSVVWDTGKYQESATVPLLTETYTLIIHDAAKDVTATAGAGHLGSWSQFYFGMYTPQPYTPLSDWVCATCNGALSSVERQTLGFMFGMATVTVLTFGWFTGAAGLW 318          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A4U0U9F0_9PEZI (Uncharacterized protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0U9F0_9PEZI)

HSP 1 Score: 275 bits (703), Expect = 1.190e-88
Identity = 177/311 (56.91%), Postives = 210/311 (67.52%), Query Frame = 2
Query:    2 ATAMAWPSEWDPRPLLA-RRDPVPTXXXXXXXAMLVARQDDGKTS-FDLNFSGQQGDTATVEESAQAS----DEAKESGSTSSDTXXXXXXXXXXXXXXXXXSAESTK--------------------TFDARLPAGGIQMITPAATLFSQYYKI-----KDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEE-TNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            A + AWPS W  RPL A +R+  P          L+ RQD G +S FDL+FSG+QG+TAT EES+ A+    D      S +S T  XXXXXXXXXXXXXXX                          + DARLPAGG+ M+TP     S+YYKI     KD+VTFAWN+TSLS TP+AVDVLASCSLN  TYTIA N+++   T S++WDTG YQ +  +PLLTE YTLIIHD++KDV A+  AGYLG W QFTFGMYTPQ YTPL+D+VCATCNGA+S+ ER+TLGFM GM  LTVLSFGWFTG AGLW
Sbjct:   15 AASSAWPSVW--RPLEAVKRELEP----------LMVRQDSGTSSGFDLSFSGKQGNTATTEESSAAATSNGDATTTDNSDASSTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSIDARLPAGGLSMVTPNVYT-SRYYKIGTEAGKDFVTFAWNFTSLSVTPSAVDVLASCSLNSETYTIATNLTISHATQSVIWDTGKYQESATVPLLTETYTLIIHDAAKDVSATAGAGYLGTWSQFTFGMYTPQAYTPLSDWVCATCNGALSSTERQTLGFMFGMAGLTVLSFGWFTGAAGLW 312          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: UPI001DC79900 (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001DC79900)

HSP 1 Score: 271 bits (693), Expect = 2.730e-87
Identity = 169/295 (57.29%), Postives = 201/295 (68.14%), Query Frame = 2
Query:   14 AWPSEWDPRPLLARRDPVPTXXXXXXXAMLVARQDDGKTS--FDLNFSGQQGDTATVEESAQASDEAKESGSTSSDTXXXXXXXXXXXXXXXXX------------------SAESTKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            A PS WDP                   A L+ RQDD +T+  FDL+F+G QG+TAT +  A+ +             XXXXXXXXXXXXXXXXX                  S +ST+TFDARLPAGG+ MITP A + S+YYK+KDYVTFAWNYTSLS TP+ VDVLASCS+NQ TYTIA NVSVEET ++VWDTG YQATG IPLLTE YTLIIHD++++V     AGYLG + QFTFGMY PQ YTP++++VCATCNGA+S  ER+ +  +  M  LTVLSF WFTGVAGLW
Sbjct:   19 AGPSGWDP-----------VEAINHDIAPLLRRQDDQETTSKFDLSFTGVQGNTATTDTQAEETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSGQSTRTFDARLPAGGVSMITPNA-MTSKYYKVKDYVTFAWNYTSLSVTPSYVDVLASCSMNQQTYTIAANVSVEETQTVVWDTGKYQATGTIPLLTETYTLIIHDAAREVTQQAQAGYLGTYNQFTFGMYIPQAYTPMSEWVCATCNGALSQAERQVMWAVLSMAGLTVLSFTWFTGVAGLW 301          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A2D3UZY5_9PEZI (Uncharacterized protein n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3UZY5_9PEZI)

HSP 1 Score: 270 bits (690), Expect = 5.620e-87
Identity = 157/260 (60.38%), Postives = 190/260 (73.08%), Query Frame = 2
Query:   95 AMLVARQDDGKTSFDLNFSGQQGDTATVEES------------AQASDEAKESGSTSSDTXXXXXXXXXXXXXXXXXSAESTKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            A +  RQD  K  FDL+FSG QG+TAT E S            A+ ++ A E+G  SS     XXXXXXXXXXXXXX    +KT+DARLPAGG+ MITP A L +QYYKI+D+VTF WNYTSLSATP+ +DVLASC+ N   YTI+ NVSVEET SI+WDTG +Q++  +PLLTE YTLIIHD++KD+ A+P AGYLG   QFTFGMYTP+PY PL +F C TCN A + +ER+TL  + GM  LT +SFGWFTGVAGLW
Sbjct:   35 APMERRQDTSK--FDLSFSGVQGNTATTEASTKETSTNSDDKNAETTNTADETGDASSGRTTGXXXXXXXXXXXXXXXXGKSKTYDARLPAGGVSMITPNA-LSTQYYKIEDFVTFVWNYTSLSATPSKIDVLASCATNNQLYTISSNVSVEETQSIIWDTGAFQSSATVPLLTETYTLIIHDAAKDISAAPQAGYLGVANQFTFGMYTPKPYVPLNEFKCVTCNSADALVERQTLLALVGMASLTAISFGWFTGVAGLW 291          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A6A6CMK3_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CMK3_9PEZI)

HSP 1 Score: 270 bits (690), Expect = 1.040e-86
Identity = 167/309 (54.05%), Postives = 213/309 (68.93%), Query Frame = 2
Query:    2 ATAMAWPSEWDPRPLLARRDPVPTXXXXXXXAMLVARQDDGKTSFDLNFSGQQGDTATVEESAQASDEAKESG---------STSSDTXXXXXXXXXXXXXXXXXS--------------------AESTKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVE-ETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            A + AWPS W+P   L +             A ++ RQDD KTSFDL++S +QG+TAT E SA+ +     +          + +SD+XXXXXXXXXXXXXXXXX                      ++TKTFDARLPAGG+ MITP A + S Y+KI +++TFAWNYTSLS TP+AVD+LASCSLNQ TYTIA N +++    +++WDTG YQA+  +PLLTE YTLIIHD++KDV A+  AGYLG + QFTFGMY+PQPYTP+A++VCATCN A++A ER+TL  +  M  +TVLSFGWFTGVAGLW
Sbjct:   15 AVSSAWPSGWEPLEALKQE-----------VAPILKRQDD-KTSFDLSYSSRQGNTATTESSAEETSTGDNNDXXXXXXXXXTATSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQTTKTFDARLPAGGVSMITPNA-MTSSYFKINNFITFAWNYTSLSVTPSAVDILASCSLNQETYTIALNQTIDGPKQTVIWDTGAYQASATVPLLTETYTLIIHDAAKDVSATAMAGYLGTYNQFTFGMYSPQPYTPMAEWVCATCNSALTAAERQTLFAIFAMAGVTVLSFGWFTGVAGLW 310          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: N1PKE2_DOTSN (Uncharacterized protein n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=N1PKE2_DOTSN)

HSP 1 Score: 267 bits (683), Expect = 7.830e-86
Identity = 168/291 (57.73%), Postives = 198/291 (68.04%), Query Frame = 2
Query:   14 AWPSEWDPRPLLARRDPVPTXXXXXXXAMLVARQDDGKTS--FDLNFSGQQGDTATVEESAQASDEAKESGSTSSDTXXXXXXXXXXXXXXXXXSAES--------------TKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            AWPS W     +               A ++ RQD+  +S  FDL+F+G+QG+TAT + SAQ + +A          XXXXXXXXXXXXXXXXX                  TKT+DARLPAGG+ MITP A   S+YYKI+DYVTFAWNYTSLS TP+ +DVLASCSLN  TYTIA N+SVEET +IVWDTG YQATG +PLLTE YTLIIHD++KDV     AGYLG + QFTFGMY PQ YTP+AD+VCATCN A+S  ER+ +  +  M  LTVLSF WFTGVAGLW
Sbjct:   19 AWPSGWGALEAINHE-----------IAPVLRRQDNQASSSKFDLSFTGKQGNTATTDTSAQETGDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTYDARLPAGGVSMITPNAET-SKYYKIRDYVTFAWNYTSLSVTPSNIDVLASCSLNSQTYTIAANLSVEETQTIVWDTGKYQATGTVPLLTETYTLIIHDAAKDVTQVAQAGYLGTYDQFTFGMYLPQSYTPMADWVCATCNSALSPAERQVMWAVLSMAGLTVLSFTWFTGVAGLW 297          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A1Z5THN0_HORWE (Fe-S_biosyn domain-containing protein n=4 Tax=Hortaea werneckii TaxID=91943 RepID=A0A1Z5THN0_HORWE)

HSP 1 Score: 274 bits (701), Expect = 2.210e-85
Identity = 165/315 (52.38%), Postives = 203/315 (64.44%), Query Frame = 2
Query:    2 ATAMAWPSEWDPRPLLARRDPVPTXXXXXXXAMLVARQDDGKTS--FDLNFSGQQGDTATVEES-----------------------------AQASDEAKESGSTSSDTXXXXXXXXXXXXXXXXXSAESTKTFDARLPAGGIQMITPAATLFSQYYKI-----KDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEE-TNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGL 835
            A + AWPS W P   + R             A LV RQD   TS  FDL+++G+QG+TAT E+S                              + + +  ++ S +  +        XXXXXXXXX   ST + D RLPAGGI MITP A L S YYKI     K++VTFAWNYTSLS TP+AVDVLASCSLN  TYTIA N+S+ + T S+VWDTG YQ +  +PLLTE YTLIIHD++KDV A+  AG+LG+W QF FGMYTPQPYTPL+D+VCATCNGA+S++ER+TLGFM GM  +TVL+FGWFTG AGL
Sbjct:   15 AASSAWPSAWQPLEAVKRE-----------IAPLVIRQDSDSTSSKFDLSYTGKQGNTATTEDSXXXXXXXXXXXXXXXXXXXXXGDSKSTATGEKTGDKTDASSATDSSKTGKSAKSXXXXXXXXXXXXSTTSIDPRLPAGGISMITPNA-LTSHYYKIGTEAGKNFVTFAWNYTSLSVTPSAVDVLASCSLNSQTYTIATNLSITDPTQSVVWDTGKYQESATVPLLTETYTLIIHDAAKDVTATAGAGHLGSWSQFYFGMYTPQPYTPLSDWVCATCNGALSSVERQTLGFMFGMATVTVLTFGWFTGAAGL 317          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A2G5I0V6_CERBT (Uncharacterized protein n=3 Tax=Cercospora TaxID=29002 RepID=A0A2G5I0V6_CERBT)

HSP 1 Score: 265 bits (678), Expect = 5.080e-85
Identity = 157/249 (63.05%), Postives = 189/249 (75.90%), Query Frame = 2
Query:  122 GKTSFDLNFSGQQGDTATVEESAQAS-DEAKESGSTSSDTXXXXXXXXXXXXXXXXX---------SAESTKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            G+TSFDL+FS  QG+TAT E +   S DE+          XXXXXXXXXXXXXXXXX            STKTFDARLPAGG+ MITP   + +QYYKIKDY+TFAWNYTSLS TP+A+DVLASCS NQ TYT+A N++VEET S  WDTG +QA+  +PLLTE YTLIIHD++KDV     AGYLG + QFTFGMY+PQPYTP+AD+VCATCNGA S++E++T   + GM  +TV++FGWFTG+AGLW
Sbjct:   55 GRTSFDLSFSATQGNTATTEPTGTRSGDESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTKKGGSSTKTFDARLPAGGVSMITPNP-MTTQYYKIKDYITFAWNYTSLSVTPSAIDVLASCSKNQQTYTLAMNLTVEETQSFTWDTGAFQASATVPLLTETYTLIIHDAAKDVTDRAQAGYLGTYDQFTFGMYSPQPYTPMADYVCATCNGA-SSLEKQTWIALLGMVGVTVVTFGWFTGLAGLW 301          
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Match: A0A2I0RL40_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeina TaxID=348901 RepID=A0A2I0RL40_9PEZI)

HSP 1 Score: 263 bits (672), Expect = 3.730e-84
Identity = 154/263 (58.56%), Postives = 189/263 (71.86%), Query Frame = 2
Query:  101 LVARQDD----GKTSFDLNFSGQQGDTATVEESAQAS--DEAKESGSTSSDTXXXXXXXXXXXXXXXXX-----------SAESTKTFDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLASCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDSSKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERRTLGFMAGMTVLTVLSFGWFTGVAGLW 838
            L  RQD+    G+T+FDL+FS  QG+TA  E +   S   +A  +G  S  T     XXXXXXXXXXXX              S+KTFD RLPAGG+ MITP   + +QYYKIKDYVTFAWNYTSLS TP+A+DVLASCS NQ TYT+A N++VEET S  WDTG +QA+  +PLLTE YTLI+HD++KDV     AGYLG + QFTFGMY PQPYTP+AD+VCATCNGA S++E++T   + GM  +TV++FGWFTG+AGLW
Sbjct:   38 LFPRQDNNDNGGRTTFDLSFSATQGNTANPEPTGTQSGDSDATATGGDSKSTGDSNNXXXXXXXXXXXXXXXXXXXTGTRKGGSSKTFDPRLPAGGVSMITPNP-MTTQYYKIKDYVTFAWNYTSLSVTPSAIDVLASCSKNQQTYTLAMNLTVEETQSFTWDTGAFQASATVPLLTETYTLIVHDAAKDVTDRAQAGYLGTFDQFTFGMYAPQPYTPMADYVCATCNGA-SSLEKQTWIALIGMVGVTVVTFGWFTGLAGLW 298          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1021.328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2ZXP8_PSEFD1.880e-8955.89Uncharacterized protein n=4 Tax=Pseudocercospora T... [more]
A0A3M7EGW0_HORWE5.080e-8955.38Uncharacterized protein n=15 Tax=Hortaea werneckii... [more]
A0A4U0U9F0_9PEZI1.190e-8856.91Uncharacterized protein n=1 Tax=Salinomyces thaila... [more]
UPI001DC799002.730e-8757.29uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]
A0A2D3UZY5_9PEZI5.620e-8760.38Uncharacterized protein n=1 Tax=Ramularia collo-cy... [more]
A0A6A6CMK3_9PEZI1.040e-8654.05Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
N1PKE2_DOTSN7.830e-8657.73Uncharacterized protein n=1 Tax=Dothistroma septos... [more]
A0A1Z5THN0_HORWE2.210e-8552.38Fe-S_biosyn domain-containing protein n=4 Tax=Hort... [more]
A0A2G5I0V6_CERBT5.080e-8563.05Uncharacterized protein n=3 Tax=Cercospora TaxID=2... [more]
A0A2I0RL40_9PEZI3.730e-8458.56Uncharacterized protein n=1 Tax=Cercospora zeina T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1021contigP-canaliculata_contig1021:11686..12526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score278.5
Seed ortholog evalue3.4e-72
Seed eggNOG ortholog83344.XP_007932526.1
EggNOG OGs201RW@147541,2BQ93@1,2S1TN@2759,39ZTT@33154,3MI53@451867,3P2A6@4751,3QU85@4890
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size841
Cds size831
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.201168-UTR-P-canaliculata_contig1021:11685..116951622815594.201168-UTR-P-canaliculata_contig1021:11685..11695Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1021 11686..11695 +
1693494155.8705392-UTR-P-canaliculata_contig1021:11685..116951693494155.8705392-UTR-P-canaliculata_contig1021:11685..11695Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1021 11686..11695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.2165155-CDS-P-canaliculata_contig1021:11695..125261622815594.2165155-CDS-P-canaliculata_contig1021:11695..12526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1021 11696..12526 +
1693494155.880422-CDS-P-canaliculata_contig1021:11695..125261693494155.880422-CDS-P-canaliculata_contig1021:11695..12526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1021 11696..12526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1021.328.1prot_P-canaliculata_contig1021.328.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1021 11696..12526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1021.328.1

>prot_P-canaliculata_contig1021.328.1 ID=prot_P-canaliculata_contig1021.328.1|Name=mRNA_P-canaliculata_contig1021.328.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=277bp
MAWPSEWDPRPLLARRDPVPTPAPTPAPAMLVARQDDGKTSFDLNFSGQQ
GDTATVEESAQASDEAKESGSTSSDTDGDGEDNEDEDNEDEESSAESTKT
FDARLPAGGIQMITPAATLFSQYYKIKDYVTFAWNYTSLSATPAAVDVLA
SCSLNQATYTIAQNVSVEETNSIVWDTGDYQATGDIPLLTEKYTLIIHDS
SKDVDASPAAGYLGAWQQFTFGMYTPQPYTPLADFVCATCNGAVSAMERR
TLGFMAGMTVLTVLSFGWFTGVAGLW*
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mRNA from alignment at P-canaliculata_contig1021:11686..12526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1021.328.1 ID=mRNA_P-canaliculata_contig1021.328.1|Name=mRNA_P-canaliculata_contig1021.328.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=841bp|location=Sequence derived from alignment at P-canaliculata_contig1021:11686..12526+ (Pelvetia canaliculata dioecious)
CGCAACGGCCATGGCCTGGCCGTCGGAGTGGGATCCTAGGCCGCTGCTGG CGCGACGAGATCCGGTACCCACACCGGCACCCACACCTGCGCCGGCAATG CTGGTGGCGAGACAAGATGATGGCAAAACATCGTTCGATTTGAATTTCTC GGGCCAGCAAGGAGACACTGCGACGGTGGAGGAATCGGCCCAAGCATCGG ATGAGGCCAAGGAATCAGGCTCCACGTCCAGCGACACCGATGGAGACGGT GAAGACAACGAGGATGAAGACAACGAGGACGAAGAGTCGTCGGCAGAGTC GACCAAGACGTTTGACGCGAGGTTACCCGCCGGGGGGATCCAGATGATCA CGCCTGCCGCCACGCTCTTCTCGCAGTACTACAAAATCAAGGACTACGTC ACCTTCGCGTGGAACTACACATCGCTGTCCGCCACGCCCGCCGCCGTCGA CGTCCTGGCCTCGTGCTCGCTCAACCAGGCCACCTACACCATTGCACAGA ACGTCTCAGTCGAGGAGACCAACAGCATCGTCTGGGACACGGGCGACTAC CAGGCCACGGGCGACATCCCGCTGCTCACCGAAAAGTACACCCTGATCAT CCACGACTCGTCCAAGGACGTCGACGCCTCGCCCGCCGCCGGCTACCTCG GCGCCTGGCAGCAGTTTACCTTCGGCATGTACACGCCGCAGCCCTACACG CCGCTGGCCGACTTCGTGTGCGCCACGTGCAACGGCGCCGTGTCGGCCAT GGAGAGGCGCACGCTCGGCTTCATGGCCGGCATGACGGTTCTGACCGTGC TCAGCTTCGGCTGGTTCACCGGCGTCGCTGGGCTGTGGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig1021:11686..12526+

>mRNA_P-canaliculata_contig1021.328.1 ID=mRNA_P-canaliculata_contig1021.328.1|Name=mRNA_P-canaliculata_contig1021.328.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at P-canaliculata_contig1021:11686..12526+ (Pelvetia canaliculata dioecious)
ATGGCCTGGCCGTCGGAGTGGGATCCTAGGCCGCTGCTGGCGCGACGAGA
TCCGGTACCCACACCGGCACCCACACCTGCGCCGGCAATGCTGGTGGCGA
GACAAGATGATGGCAAAACATCGTTCGATTTGAATTTCTCGGGCCAGCAA
GGAGACACTGCGACGGTGGAGGAATCGGCCCAAGCATCGGATGAGGCCAA
GGAATCAGGCTCCACGTCCAGCGACACCGATGGAGACGGTGAAGACAACG
AGGATGAAGACAACGAGGACGAAGAGTCGTCGGCAGAGTCGACCAAGACG
TTTGACGCGAGGTTACCCGCCGGGGGGATCCAGATGATCACGCCTGCCGC
CACGCTCTTCTCGCAGTACTACAAAATCAAGGACTACGTCACCTTCGCGT
GGAACTACACATCGCTGTCCGCCACGCCCGCCGCCGTCGACGTCCTGGCC
TCGTGCTCGCTCAACCAGGCCACCTACACCATTGCACAGAACGTCTCAGT
CGAGGAGACCAACAGCATCGTCTGGGACACGGGCGACTACCAGGCCACGG
GCGACATCCCGCTGCTCACCGAAAAGTACACCCTGATCATCCACGACTCG
TCCAAGGACGTCGACGCCTCGCCCGCCGCCGGCTACCTCGGCGCCTGGCA
GCAGTTTACCTTCGGCATGTACACGCCGCAGCCCTACACGCCGCTGGCCG
ACTTCGTGTGCGCCACGTGCAACGGCGCCGTGTCGGCCATGGAGAGGCGC
ACGCTCGGCTTCATGGCCGGCATGACGGTTCTGACCGTGCTCAGCTTCGG
CTGGTTCACCGGCGTCGCTGGGCTGTGGTGAATGGCCTGGCCGTCGGAGT
GGGATCCTAGGCCGCTGCTGGCGCGACGAGATCCGGTACCCACACCGGCA
CCCACACCTGCGCCGGCAATGCTGGTGGCGAGACAAGATGATGGCAAAAC
ATCGTTCGATTTGAATTTCTCGGGCCAGCAAGGAGACACTGCGACGGTGG
AGGAATCGGCCCAAGCATCGGATGAGGCCAAGGAATCAGGCTCCACGTCC
AGCGACACCGATGGAGACGGTGAAGACAACGAGGATGAAGACAACGAGGA
CGAAGAGTCGTCGGCAGAGTCGACCAAGACGTTTGACGCGAGGTTACCCG
CCGGGGGGATCCAGATGATCACGCCTGCCGCCACGCTCTTCTCGCAGTAC
TACAAAATCAAGGACTACGTCACCTTCGCGTGGAACTACACATCGCTGTC
CGCCACGCCCGCCGCCGTCGACGTCCTGGCCTCGTGCTCGCTCAACCAGG
CCACCTACACCATTGCACAGAACGTCTCAGTCGAGGAGACCAACAGCATC
GTCTGGGACACGGGCGACTACCAGGCCACGGGCGACATCCCGCTGCTCAC
CGAAAAGTACACCCTGATCATCCACGACTCGTCCAAGGACGTCGACGCCT
CGCCCGCCGCCGGCTACCTCGGCGCCTGGCAGCAGTTTACCTTCGGCATG
TACACGCCGCAGCCCTACACGCCGCTGGCCGACTTCGTGTGCGCCACGTG
CAACGGCGCCGTGTCGGCCATGGAGAGGCGCACGCTCGGCTTCATGGCCG
GCATGACGGTTCTGACCGTGCTCAGCTTCGGCTGGTTCACCGGCGTCGCT
GGGCTGTGGTGA
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