mRNA_P-canaliculata_contig102098.324.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102098.324.1
Unique NamemRNA_P-canaliculata_contig102098.324.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: U5U8B3_9CHLO (Uncharacterized protein n=1 Tax=Chlorella sp. ArM0029B TaxID=1415603 RepID=U5U8B3_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 2.380e-19
Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            G   R    ATW    +  LG +P        S RRETVRSISGVGVR LRG F  TRGP RT+ W TSYH NG+RWV
Sbjct:   29 GLAPRCRLIATWGGSTSQGLGCSPMKAVRELGSERRETVRSISGVGVRALRGVFHSTRGPGRTHLWYTSYHANGRRWV 106          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A0C5DZR2_GRALE (Uncharacterized protein n=1 Tax=Gracilariopsis lemaneiformis TaxID=2782 RepID=A0A0C5DZR2_GRALE)

HSP 1 Score: 82.0 bits (201), Expect = 6.230e-19
Identity = 37/46 (80.43%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  127 SGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            S RRETVRSISGVGVRVLRGF   TRGP  TYRWCTSY  N KRWV
Sbjct:    9 SERRETVRSISGVGVRVLRGFLLSTRGPGETYRWCTSYCANSKRWV 54          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A200PP66_9MAGN (Uncharacterized protein n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A200PP66_9MAGN)

HSP 1 Score: 83.6 bits (205), Expect = 4.390e-18
Identity = 46/91 (50.55%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 ELHRRTAAEKNDHGAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            EL  +T     D     R    ATW   +   LG +P        S RRETVRSISGVGVR LRG F  TRGP RT+ WCTSY  +GKRWV
Sbjct:   93 ELDCKTHPSSRDESLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWV 183          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A5N6L135_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L135_9ROSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.010e-18
Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            G   R    ATW   +   LG +P        S RRETVRSISGVGVR LRG F  TRGP RT+ WCTSY  +GKRWV
Sbjct:   62 GLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWV 139          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A3B5Y696_WHEAT (Uncharacterized protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A3B5Y696_WHEAT)

HSP 1 Score: 79.7 bits (195), Expect = 1.420e-17
Identity = 43/78 (55.13%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            G   R    ATW       LG +P +      S RRETVRSISGVGVR LRG F  TRGP RT+ WCTSY   GKRWV
Sbjct:   12 GLAPRCRLFATWSCRWFQGLGCSPINAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAYGKRWV 89          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A445EIS7_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445EIS7_ARAHY)

HSP 1 Score: 77.8 bits (190), Expect = 7.320e-17
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   97 LGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            LGY+P        S RRETVRSISGVGVR LRG F  TRGP RT+ WC SY  +GKRWV
Sbjct:    5 LGYSPIKAVRELGSERRETVRSISGVGVRALRGPFPNTRGPERTHLWCASYRAHGKRWV 63          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A061S5B8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5B8_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 1.580e-16
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = -1
Query:  133 LVHPAFTIGMITGTPAVCSSRSSRFKEESSQYSNAYTGYGPNCLTT 270
            L +PAFT+G ITGTPAVC SRSSR KE S Q SNAYTGYGPNCLTT
Sbjct:   10 LGYPAFTVGTITGTPAVCPSRSSRTKEGSFQXSNAYTGYGPNCLTT 55          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A0J8CFQ3_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CFQ3_BETVV)

HSP 1 Score: 77.0 bits (188), Expect = 1.590e-16
Identity = 41/78 (52.56%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            G   R    ATW   +   LG +P        S  RETVRSISGVGVR LRG F  TRGP R + WCTSY ++GKRWV
Sbjct:   11 GLTPRCRLFATWGCSMFQGLGCSPIKAVRELGSELRETVRSISGVGVRALRGPFPSTRGPGRMHLWCTSYRSHGKRWV 88          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A6A5MXD5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MXD5_LUPAL)

HSP 1 Score: 81.6 bits (200), Expect = 3.630e-16
Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            G   R    ATW   +   LG +P        S RRETVRSISGVGVR LRG F  TRGP RT+ WCTSY  +GKRWV
Sbjct:  281 GLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHPWCTSYRAHGKRWV 358          
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A4U5PUL4_POPAL (Uncharacterized protein n=1 Tax=Populus alba TaxID=43335 RepID=A0A4U5PUL4_POPAL)

HSP 1 Score: 80.5 bits (197), Expect = 6.870e-16
Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
            G   R    ATW   +   LG +P        S RRETVRSISGVGVR LRG F  TRGP RT+ WCTSY  +GKRWV
Sbjct:  246 GLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYCAHGKRWV 323          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U5U8B3_9CHLO2.380e-1955.13Uncharacterized protein n=1 Tax=Chlorella sp. ArM0... [more]
A0A0C5DZR2_GRALE6.230e-1980.43Uncharacterized protein n=1 Tax=Gracilariopsis lem... [more]
A0A200PP66_9MAGN4.390e-1850.55Uncharacterized protein n=5 Tax=Mesangiospermae Ta... [more]
A0A5N6L135_9ROSI9.010e-1855.13Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A3B5Y696_WHEAT1.420e-1755.13Uncharacterized protein n=4 Tax=Poaceae TaxID=4479... [more]
A0A445EIS7_ARAHY7.320e-1764.41Uncharacterized protein n=1 Tax=Arachis hypogaea T... [more]
A0A061S5B8_9CHLO1.580e-1680.43Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A0J8CFQ3_BETVV1.590e-1652.56Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A6A5MXD5_LUPAL3.630e-1655.13Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A4U5PUL4_POPAL6.870e-1655.13Uncharacterized protein n=1 Tax=Populus alba TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102098contigP-canaliculata_contig102098:661..930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.5
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog113355.CM001775_gene1926
EggNOG OGs1G9K3@1117,2DNQR@1,32YKU@2
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.9880092-CDS-P-canaliculata_contig102098:660..9301622815593.9880092-CDS-P-canaliculata_contig102098:660..930Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102098 661..930 +
1693494155.7764788-CDS-P-canaliculata_contig102098:660..9301693494155.7764788-CDS-P-canaliculata_contig102098:660..930Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102098 661..930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102098.324.1prot_P-canaliculata_contig102098.324.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102098 661..930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102098.324.1

>prot_P-canaliculata_contig102098.324.1 ID=prot_P-canaliculata_contig102098.324.1|Name=mRNA_P-canaliculata_contig102098.324.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=90bp
ELHRRTAAEKNDHGAKERAECSATWLRIVAWSLGYTPASRCCSGRRETVR
SISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWVD*
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mRNA from alignment at P-canaliculata_contig102098:661..930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102098.324.1 ID=mRNA_P-canaliculata_contig102098.324.1|Name=mRNA_P-canaliculata_contig102098.324.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at P-canaliculata_contig102098:661..930+ (Pelvetia canaliculata dioecious)
GAGCTACACAGAAGAACGGCTGCAGAGAAAAATGATCATGGCGCGAAGGA ACGCGCTGAATGCAGTGCCACCTGGTTGCGCATAGTGGCATGGTCCCTGG GCTATACACCAGCCAGCAGATGCTGTTCAGGACGTCGTGAGACAGTTCGG TCCATATCCGGTGTAGGCGTTAGAGTATTGAGAGGATTCTTCTTTAAAAC GAGAGGACCGAGAAGAACATACCGCTGGTGTACCAGTTATCATACCAATG GTAAACGCTGGGTGGACTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102098:661..930+

>mRNA_P-canaliculata_contig102098.324.1 ID=mRNA_P-canaliculata_contig102098.324.1|Name=mRNA_P-canaliculata_contig102098.324.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at P-canaliculata_contig102098:661..930+ (Pelvetia canaliculata dioecious)
GAGCTACACAGAAGAACGGCTGCAGAGAAAAATGATCATGGCGCGAAGGA
ACGCGCTGAATGCAGTGCCACCTGGTTGCGCATAGTGGCATGGTCCCTGG
GCTATACACCAGCCAGCAGATGCTGTTCAGGACGTCGTGAGACAGTTCGG
TCCATATCCGGTGTAGGCGTTAGAGTATTGAGAGGATTCTTCTTTAAAAC
GAGAGGACCGAGAAGAACATACCGCTGGTGTACCAGTTATCATACCAATG
GTAAACGCTGGGTGGACTAAGAGCTACACAGAAGAACGGCTGCAGAGAAA
AATGATCATGGCGCGAAGGAACGCGCTGAATGCAGTGCCACCTGGTTGCG
CATAGTGGCATGGTCCCTGGGCTATACACCAGCCAGCAGATGCTGTTCAG
GACGTCGTGAGACAGTTCGGTCCATATCCGGTGTAGGCGTTAGAGTATTG
AGAGGATTCTTCTTTAAAACGAGAGGACCGAGAAGAACATACCGCTGGTG
TACCAGTTATCATACCAATGGTAAACGCTGGGTGGACTAA
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