mRNA_P-canaliculata_contig102098.324.1 (mRNA) Pelvetia canaliculata dioecious
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: U5U8B3_9CHLO (Uncharacterized protein n=1 Tax=Chlorella sp. ArM0029B TaxID=1415603 RepID=U5U8B3_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 2.380e-19 Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
G R ATW + LG +P S RRETVRSISGVGVR LRG F TRGP RT+ W TSYH NG+RWV
Sbjct: 29 GLAPRCRLIATWGGSTSQGLGCSPMKAVRELGSERRETVRSISGVGVRALRGVFHSTRGPGRTHLWYTSYHANGRRWV 106
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A0C5DZR2_GRALE (Uncharacterized protein n=1 Tax=Gracilariopsis lemaneiformis TaxID=2782 RepID=A0A0C5DZR2_GRALE) HSP 1 Score: 82.0 bits (201), Expect = 6.230e-19 Identity = 37/46 (80.43%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 127 SGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
S RRETVRSISGVGVRVLRGF TRGP TYRWCTSY N KRWV
Sbjct: 9 SERRETVRSISGVGVRVLRGFLLSTRGPGETYRWCTSYCANSKRWV 54
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A200PP66_9MAGN (Uncharacterized protein n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A200PP66_9MAGN) HSP 1 Score: 83.6 bits (205), Expect = 4.390e-18 Identity = 46/91 (50.55%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 1 ELHRRTAAEKNDHGAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
EL +T D R ATW + LG +P S RRETVRSISGVGVR LRG F TRGP RT+ WCTSY +GKRWV
Sbjct: 93 ELDCKTHPSSRDESLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWV 183
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A5N6L135_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L135_9ROSI) HSP 1 Score: 81.6 bits (200), Expect = 9.010e-18 Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
G R ATW + LG +P S RRETVRSISGVGVR LRG F TRGP RT+ WCTSY +GKRWV
Sbjct: 62 GLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWV 139
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A3B5Y696_WHEAT (Uncharacterized protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A3B5Y696_WHEAT) HSP 1 Score: 79.7 bits (195), Expect = 1.420e-17 Identity = 43/78 (55.13%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
G R ATW LG +P + S RRETVRSISGVGVR LRG F TRGP RT+ WCTSY GKRWV
Sbjct: 12 GLAPRCRLFATWSCRWFQGLGCSPINAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAYGKRWV 89
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A445EIS7_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445EIS7_ARAHY) HSP 1 Score: 77.8 bits (190), Expect = 7.320e-17 Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 97 LGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
LGY+P S RRETVRSISGVGVR LRG F TRGP RT+ WC SY +GKRWV
Sbjct: 5 LGYSPIKAVRELGSERRETVRSISGVGVRALRGPFPNTRGPERTHLWCASYRAHGKRWV 63
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A061S5B8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5B8_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 1.580e-16 Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = -1
Query: 133 LVHPAFTIGMITGTPAVCSSRSSRFKEESSQYSNAYTGYGPNCLTT 270
L +PAFT+G ITGTPAVC SRSSR KE S Q SNAYTGYGPNCLTT
Sbjct: 10 LGYPAFTVGTITGTPAVCPSRSSRTKEGSFQXSNAYTGYGPNCLTT 55
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A0J8CFQ3_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CFQ3_BETVV) HSP 1 Score: 77.0 bits (188), Expect = 1.590e-16 Identity = 41/78 (52.56%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
G R ATW + LG +P S RETVRSISGVGVR LRG F TRGP R + WCTSY ++GKRWV
Sbjct: 11 GLTPRCRLFATWGCSMFQGLGCSPIKAVRELGSELRETVRSISGVGVRALRGPFPSTRGPGRMHLWCTSYRSHGKRWV 88
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A6A5MXD5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MXD5_LUPAL) HSP 1 Score: 81.6 bits (200), Expect = 3.630e-16 Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
G R ATW + LG +P S RRETVRSISGVGVR LRG F TRGP RT+ WCTSY +GKRWV
Sbjct: 281 GLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHPWCTSYRAHGKRWV 358
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Match: A0A4U5PUL4_POPAL (Uncharacterized protein n=1 Tax=Populus alba TaxID=43335 RepID=A0A4U5PUL4_POPAL) HSP 1 Score: 80.5 bits (197), Expect = 6.870e-16 Identity = 43/78 (55.13%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 40 GAKERAECSATWLRIVAWSLGYTPAS---RCCSGRRETVRSISGVGVRVLRGFFFKTRGPRRTYRWCTSYHTNGKRWV 264
G R ATW + LG +P S RRETVRSISGVGVR LRG F TRGP RT+ WCTSY +GKRWV
Sbjct: 246 GLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYCAHGKRWV 323 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102098.324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102098.324.1 >prot_P-canaliculata_contig102098.324.1 ID=prot_P-canaliculata_contig102098.324.1|Name=mRNA_P-canaliculata_contig102098.324.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=90bp ELHRRTAAEKNDHGAKERAECSATWLRIVAWSLGYTPASRCCSGRRETVRback to top mRNA from alignment at P-canaliculata_contig102098:661..930+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102098.324.1 ID=mRNA_P-canaliculata_contig102098.324.1|Name=mRNA_P-canaliculata_contig102098.324.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at P-canaliculata_contig102098:661..930+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102098:661..930+ >mRNA_P-canaliculata_contig102098.324.1 ID=mRNA_P-canaliculata_contig102098.324.1|Name=mRNA_P-canaliculata_contig102098.324.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at P-canaliculata_contig102098:661..930+ (Pelvetia canaliculata dioecious)back to top |