mRNA_P-canaliculata_contig102088.322.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A7C4C8S4_9BACT (Type II secretion system protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C4C8S4_9BACT) HSP 1 Score: 70.1 bits (170), Expect = 5.930e-10 Identity = 90/313 (28.75%), Postives = 131/313 (41.85%), Query Frame = 1
Query: 1 CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKMSGP-LSDADKVALANTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPTNEVLYRGLFASGDIYGLGNEVI------PVSSYS----MNSVWQLRKDGDTSS-DLMDGDSGAFMSEIDGNFGTGW-----RFDGIRNASTKVVVSEGARYMGDPTESDGEV----TYNGIAGYVGGTNFSHNGWIYSGSGGAPYRWGTGNQSTNTVDI------EDVALGSR--------SNAFRHPQTSINQLKFDGSGENASVAEAVKIERHVPSGSVV 834
C NLRQ G GM TY AEN+DYYPG+NTSG + L + + N S P+Q DW++PSL LP ER + + +RCPT ++L +++ G G + P SY + V Q +K D + F N+ + + + KV S+G RY+ D +V TY G +F+ G +SG R GT N S V E++A+ R S A R + +IN + FDG E + ++ + PSG+VV
Sbjct: 56 CGQNLRQLGNGMQTYVAENNDYYPGLNTSGVWLEAQRLRWGADLGIINRS-KMPVQVFDWMTPSLSGAGELPASRVERFKFLV-DKYRCPT-QMLTSTVYSDGATPPEGLDAFRNVAPWPTVSYLSPVFFHYVGQRQKTRVVGRMDHPTANVNIFAKAAPPNWNVVVDDFLPQITRVGTPARKVFASDGTRYLDASLLLDFDVYPSPTYYG--------SFTGAGAYWSGCTAFGVRQGTQNWSGQNVSAGSPASGENMAVSYRHGQQRGVSSGACRDNKGTINAMFFDGHVERLTDRQSREAHLWYPSGAVV 357
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A2D9CCV3_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CCV3_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 2.420e-9 Identity = 84/301 (27.91%), Postives = 125/301 (41.53%), Query Frame = 1
Query: 1 CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKMSGPLSDADKVALA-NTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPT----NEVLYRGLFASGDIYGL---GNEVIPVSSYSMNSVWQLRKDGDTSSDLMDGDSGAFMSEIDGNFGTGWRFDGIRNA-----STKVVVSEGARYMGDPTESDGEVTYNGIAGYVGGTNFSHNGWIYSGSGGAPYRWGT-GNQSTNTVDIEDVALGSRSNAFRHPQTSINQLKFDGSGENASVAEA-VKIERHVPSGSVVTGTADTPD 858
C + R AG GM TY +N+++YPG N+SGA+ D ++ NTS P DW+SPSLG L L + ER IF DF C + LY G + D + G +S + S + ++ + G + + D T F N S K+ ++G RY+ E G V + V T S G+ G Y GT G+++ I + L + + RH Q ++N L FDG E+ + + P+GSV TG T +
Sbjct: 47 CAATQRSAGQGMQTYALDNNEFYPGPNSSGAQHRINRGAPDLYGMSRNTSSTTPTTVWDWISPSLGDSLGLSVNRAERTSQIF-SDFGCQEARLFTDTLYGGWIDTADFQRVLTEGRGFKQISYLTPGSFHFYSSELGGNAPRIQGSNVQYFVGFDDPATTPRSFKPTLNRVGTSMSGKIFAADGTRYL---AEERGTVILDFDLNPVARTYSSF------GTSGPIYDDGTNGSRAYGRNTIPNSELNAEL-SIRH-QDAVNALYFDGHVESINKVDMYTNPNPWFPTGSVFTGEKATDE 335
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A357KU40_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A357KU40_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 1.180e-5 Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = 1
Query: 7 SNL-RQAGIGMYTYGAENDDYYPGMNTSGAKM-SGPLSDADKVALANTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPTNEVLYRGLFASGDIYGL---------GNEVIPVSSYSMNSVWQL--RKDG----DTSSDLMDGDSGAFMSEIDGNFGTGW--------RFDGIRNASTKVVVSEGARYMGDPTES--DGEVTYNG 570
SN+ RQ +GM Y END + PG+NTSG + SG + AD + + + P +P+ DW++PSL G LP + R+ +F E + P + R D + G E++ S+ M+ WQL KD + SD ++ + F + G + RF+ + N S K+ +S+G RY+ + D +VTY+G
Sbjct: 22 SNIQRQLVLGMNVYATENDQWIPGINTSGRRFFSGGGNPADTMDESGSIPVQPM---DWMTPSLA-GTDLPANRSARIFTLF-EQYADPA--MTQRSAVFGSDAGSIVAEYLQDRTGGELLRHPSFLMSMNWQLFGAKDSLSIPEAKSDNLNPIT-QFTTPRYGELRNIYHLPESYRPRFERVGNPSRKICISDGFRYIENRNSIVIDVDVTYSG 228
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A4P5X9B4_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5X9B4_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 1.250e-5 Identity = 79/282 (28.01%), Postives = 115/282 (40.78%), Query Frame = 1
Query: 1 CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKM--SGPLSDADKVALANTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPTNEVLYRGLFASGDIYGLGNEVIPVSSYSMNSVWQLRKDGDTSSDLMDGDSGAFMSEIDGN----FGTGWRFDGIRNA--------------STKVVVSEGARYMGDPTESDG-----EVTYNGIAGYVGGTNFSHNGWIYSGSGGAPYRWGTGNQSTNTVDIEDVALGSRSNAFRHPQTSINQLKFDGSG 771
CLSN+R + Y E D+Y TSGA++ +G +S +L +T+P +P+Q D++SP G L + R IF FRCP Y LF S + + S L G + G G + S GN G+ FD IRN S+K ++ +G RY+ D + +G +VT + I G N+S N Y+GS Y G T+ + + + RH T +N FDGSG
Sbjct: 44 CLSNIRSITLAQSLYMNEQKDFYASAWTSGAELDATGGVS-----SLGDTTPTKPVQVFDFMSPIFGDSLNYSPNRARRTQQIFN-GFRCPIQRRSYTTLFGSATDDSQFRAIQDTETTGFQSSSYLMSYGFHAVWAGPGAPGNYTSTQWGNRGQSIGSPPYFDTIRNPISFFPRLDKVGTQLSSKAMIIDGTRYI-DYSRPEGPVYDFDVTPDSIFG-----NYSDNP-TYNGS--TAYGRNRGGTFTDHLKL----------SMRH-DTGVNAGFFDGSG 299
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A7C5SGN4_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5SGN4_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 5.650e-5 Identity = 58/207 (28.02%), Postives = 91/207 (43.96%), Query Frame = 1
Query: 1 CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKMSGP-LSDADKVALANTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPTNEVLYRGLFASGDIYGLGNEVIPVSS----YSMNSVWQLRKDGDTSSDLMDGDSGAFMSEI-------DG---NFGTGWRFDGI--------------RNASTKVVVSEGARYMGD 534
C +N+R Y Y +NDD+ PG+NT+G K P L + ++ +TS P + DW+SP LG L + R++ F +F C E + IY G +P ++ + + Q+ S LM GAF S+ DG FGTG+ DG R+ STK++ ++G+R+M +
Sbjct: 49 CSANMRGIAQLEYQYNMDNDDWIPGLNTTGWKYEQPALGFSTEMLAGDTSSTTPTNSTDWISPILGEA-GLSANRASRLVQQFN-NFGCTEAEFITT-------IYPAGLSGVPDATDFEQFQRRGILQV-------SYLMPQVFGAFGSDFATAVILPDGYGIRFGTGFN-DGAKIPANYAPRLERVGRSPSTKIMFADGSRFMSE 238
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A6I0EXU6_9BACT (Type II secretion system protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A6I0EXU6_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 5.770e-5 Identity = 80/311 (25.72%), Postives = 128/311 (41.16%), Query Frame = 1
Query: 1 CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKMSGPLSDADKVALANTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPT----NEVLYRGLFASGDIYGLGNEVIPVS--SYSMNSVWQLRKDGDTSSDL--MDGDSGAFMSEIDGNFGTGWRF---------DGIRNASTKVVVSEGARYMGDPTESDGEVTYNGIAGYVGGTN----FSHNGWIYSGSGGAPYRWGTGNQSTNTVDIEDVALGSRSN------AFRHPQT------SINQLKFDGSGENASVAEAVKIERHVPSGSVV 834
C + R G GM TY AE +D+ PG+NTSG + D D D P+Q DW++P + LP + R + ++CP+ +Y G DI E P+ SY M +++Q S + G++ AF +E+ + W + I TK++ ++G RY+ + DG + I + ++ FS G + G+ +G G + TVD + S S+ ++RH SIN L FD E+ + E+ +I P G VV
Sbjct: 59 CGAQFRDIGGGMATYFAEENDWIPGVNTSGPTVRQHRYDEDYNHA-----DLPVQTFDWMTPVFTRIMKLP-EKRSTRFHFMLDHWQCPSVAPDGPAIYSGTLPP-DIEDFEAEPFPLVTVSYLMPAMFQYWGQAQASEIVGRYKGNNQAFTAEVGDDI---WEVVVSDYKSNVNRIGTPGTKIMAADGTRYV----DLDGGALTHDIDVHPWRSSLFQSFSDPGGWWQGA----TAFGAGRRD-KTVDGRPIVYASPSDGQNQKWSYRHGSARDVRDKSINSLFFDNHVESLTNRESREIRYWYPRGGVV 350
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Match: A0A847I475_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A847I475_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 5.780e-5 Identity = 52/194 (26.80%), Postives = 81/194 (41.75%), Query Frame = 1
Query: 1 CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKMS--GPLSDADKVALANTSPDRPLQADDWVSPSLGFGLALPKDARERMLAIFREDFRCPTNEVLYRGLFASGDIYGLGNEVIPVS------SYSMNSVWQLRKDGDTSSDLMDGDSGAFMSEIDG----------NFGTGWRFDGIRNASTKVVVSEGARYM 528
C L GIG+ TY +N+++ PG+NTSG + L ++ L+ PD P+QA DW++P L LP R E RCP+ + L+ L+ Y +V + SY M + +Q T L + + G N+ R D + + KV V++G RY+
Sbjct: 38 CGQRLHDFGIGLATYVNDNEEWLPGVNTSGVAVRTLDLLWRSEPQVLSR--PDLPVQAWDWMTPLLAGKTELPA-VRALRFKFLLEQMRCPS-QFLHSALWEGEGYYSPDRQVFKANGPYRTISYLMPAQFQFVGQAHTEETLAYKHGSDYPRWVRGRAPPDTFEYINYDYRPRLDQVGQPAGKVFVADGTRYL 227 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102088.322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102088.322.1 >prot_P-canaliculata_contig102088.322.1 ID=prot_P-canaliculata_contig102088.322.1|Name=mRNA_P-canaliculata_contig102088.322.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=297bp CLSNLRQAGIGMYTYGAENDDYYPGMNTSGAKMSGPLSDADKVALANTSPback to top mRNA from alignment at P-canaliculata_contig102088:3..893+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102088.322.1 ID=mRNA_P-canaliculata_contig102088.322.1|Name=mRNA_P-canaliculata_contig102088.322.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at P-canaliculata_contig102088:3..893+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102088:3..893+ >mRNA_P-canaliculata_contig102088.322.1 ID=mRNA_P-canaliculata_contig102088.322.1|Name=mRNA_P-canaliculata_contig102088.322.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at P-canaliculata_contig102088:3..893+ (Pelvetia canaliculata dioecious)back to top |