mRNA_P-canaliculata_contig102066.319.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102066.319.1
Unique NamemRNA_P-canaliculata_contig102066.319.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A518EVB0_9BACT (Putative DMT superfamily transporter inner membrane protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EVB0_9BACT)

HSP 1 Score: 154 bits (389), Expect = 4.510e-41
Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISGFRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLAIL 378
            G+L A  AA  IGT+VP+GRG F DV + PG FIRLA GA+GA P+A ++G RRG+T A E+ +L++P+F AP P SVWG  +L GVGCAI GL  YHYA RELP GI+  LF++TPLFTLPLAI+
Sbjct:  166 GVLLAVVAAFAIGTSVPLGRGSFGDVSVFPGGFIRLAGGAVGAIPMAILAGIRRGSTSANELGRLLEPIFAAPGPGSVWGRASLFGVGCAIIGLGPYHYAQRELPSGIATTLFASTPLFTLPLAII 291          
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A523PL06_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PL06_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 3.250e-16
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISGF------RRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLAIL 378
            G++FA  AA+   +A+  G  GF D G+ P   +RLA G  G   +A  +G          T+ A E++ +++P+        VW  + L  +  ++ GL+ +HYALRELP G+S VLFSTTPLF LPL  L
Sbjct:  164 GVVFALIAALVYASAILAGHAGFGDGGVLPATVVRLAGGVAGGLVIAIFAGLLGLGAGSGRTSVARELADIVRPI----RTPGVWRRLGLAALFGSVLGLLPFHYALRELPGGLSPVLFSTTPLFLLPLGFL 291          
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A2D5XP23_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XP23_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 5.570e-13
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISG-FRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLA 372
            G+L A G A+ I  A+  G  G    GI  GA +RL+ G +GAF +A   G  RRG     E ++L +PL     P  +   +  + +G ++ GL+ YH ALREL  G++A++FSTTPLFTLP A
Sbjct:  159 GVLLATGNALAITVAILSGHEGMQGAGIFSGAGVRLSGGVIGAFLIATTLGVMRRGL--GREFAELTKPL---RRPQGMRALLIASVIG-SVLGLIPYHLALRELSAGVAALVFSTTPLFTLPFA 277          
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A800MF66_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MF66_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-12
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 1
Query:    1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISG-FRRGTTPAAEVSKLIQPL-----FVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLA 372
            G+L A G A+ I  ++  G  G    GI  GA +RL+ G +GAF +A + G  RRG     E + L +PL       A   ASV GSV          GL+ YH ALREL  G++A++FSTTPLFTLP A
Sbjct:  159 GVLLATGNALAITISILSGHEGMQGAGIFSGAAVRLSGGVIGAFLIATVFGVMRRGL--GREFAALTKPLRRRQGLRALLIASVIGSVL---------GLIPYHLALRELSAGVAALVFSTTPLFTLPFA 277          
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A2E6D8Y1_9BACT (Uncharacterized protein n=4 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D8Y1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.390e-8
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   43 AVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISGFRRG-TTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPL 369
            AV +G    + V +  G  +R+  G LGA  LAA  G  R  T+P  EV+ L   L   P    V   + +  +  ++   + Y+ ALR+LP G++A+LF+TTPLFTLPL
Sbjct:  180 AVVLGHDALAGVDVITGGGVRVIGGLLGALVLAAAMGVARPRTSPRREVAHLTAGLHCLP----VLRLLLIPSLCASLLNQIPYNLALRDLPGGVAALLFATTPLFTLPL 285          
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A518BKV4_9BACT (Putative DMT superfamily transporter inner membrane protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BKV4_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.200e-5
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 1
Query:    1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLA-AISGFRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLAI 375
            G+  A  AA++   A+  GR GF  V + PG  +RL  G  GA  +A A+ G R        +++L+  L   P+   +   + L G   A+  L  +  AL  L PG+SA+LF+TTPLF LP+ +
Sbjct:  166 GVSLASLAALSQAFAIVSGRRGFEGVDLLPGTVLRLVGGVAGAALIAIALGGLRGRGGMRRSLTQLVGGLGHRPTLLLLLPPI-LVG---AVLNLPLHSLALGSLSPGVSAILFATTPLFALPIGL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A518EVB0_9BACT4.510e-4161.11Putative DMT superfamily transporter inner membran... [more]
A0A523PL06_9BACT3.250e-1638.64Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5XP23_9BACT5.570e-1341.60Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800MF66_9BACT1.410e-1243.08Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E6D8Y1_9BACT5.390e-838.18Uncharacterized protein n=4 Tax=cellular organisms... [more]
A0A518BKV4_9BACT1.200e-534.92Putative DMT superfamily transporter inner membran... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102066contigP-canaliculata_contig102066:120..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.6741621-CDS-P-canaliculata_contig102066:119..4971622815593.6741621-CDS-P-canaliculata_contig102066:119..497Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102066 120..497 +
1693494155.6253111-CDS-P-canaliculata_contig102066:119..4971693494155.6253111-CDS-P-canaliculata_contig102066:119..497Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102066 120..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102066.319.1prot_P-canaliculata_contig102066.319.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102066 120..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102066.319.1

>prot_P-canaliculata_contig102066.319.1 ID=prot_P-canaliculata_contig102066.319.1|Name=mRNA_P-canaliculata_contig102066.319.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=126bp
GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAIS
GFRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYA
LRELPPGISAVLFSTTPLFTLPLAIL
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mRNA from alignment at P-canaliculata_contig102066:120..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102066.319.1 ID=mRNA_P-canaliculata_contig102066.319.1|Name=mRNA_P-canaliculata_contig102066.319.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at P-canaliculata_contig102066:120..497+ (Pelvetia canaliculata dioecious)
GGAATCCTCTTCGCGTTTGGGGCGGCCGTCACCATTGGCACTGCCGTGCC CATCGGGCGGGGCGGCTTCTCGGACGTGGGCATTTGCCCGGGCGCCTTTA TCCGTCTGGCGGCGGGAGCCCTCGGCGCGTTTCCCCTTGCGGCGATCTCC GGCTTCCGCCGTGGTACGACGCCTGCGGCCGAGGTTTCTAAGCTCATCCA GCCCCTCTTCGTCGCGCCCAGCCCGGCGTCCGTTTGGGGCAGTGTCGCTT TGACCGGTGTGGGCTGCGCGATCGCCGGTCTTGTCACCTACCACTACGCG CTTCGGGAACTACCCCCGGGGATTTCGGCGGTGTTGTTCTCGACCACGCC GCTCTTCACCCTGCCGCTGGCGATTCTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102066:120..497+

>mRNA_P-canaliculata_contig102066.319.1 ID=mRNA_P-canaliculata_contig102066.319.1|Name=mRNA_P-canaliculata_contig102066.319.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at P-canaliculata_contig102066:120..497+ (Pelvetia canaliculata dioecious)
GGAATCCTCTTCGCGTTTGGGGCGGCCGTCACCATTGGCACTGCCGTGCC
CATCGGGCGGGGCGGCTTCTCGGACGTGGGCATTTGCCCGGGCGCCTTTA
TCCGTCTGGCGGCGGGAGCCCTCGGCGCGTTTCCCCTTGCGGCGATCTCC
GGCTTCCGCCGTGGTACGACGCCTGCGGCCGAGGTTTCTAAGCTCATCCA
GCCCCTCTTCGTCGCGCCCAGCCCGGCGTCCGTTTGGGGCAGTGTCGCTT
TGACCGGTGTGGGCTGCGCGATCGCCGGTCTTGTCACCTACCACTACGCG
CTTCGGGAACTACCCCCGGGGATTTCGGCGGTGTTGTTCTCGACCACGCC
GCTCTTCACCCTGCCGCTGGCGATTCTGGGAATCCTCTTCGCGTTTGGGG
CGGCCGTCACCATTGGCACTGCCGTGCCCATCGGGCGGGGCGGCTTCTCG
GACGTGGGCATTTGCCCGGGCGCCTTTATCCGTCTGGCGGCGGGAGCCCT
CGGCGCGTTTCCCCTTGCGGCGATCTCCGGCTTCCGCCGTGGTACGACGC
CTGCGGCCGAGGTTTCTAAGCTCATCCAGCCCCTCTTCGTCGCGCCCAGC
CCGGCGTCCGTTTGGGGCAGTGTCGCTTTGACCGGTGTGGGCTGCGCGAT
CGCCGGTCTTGTCACCTACCACTACGCGCTTCGGGAACTACCCCCGGGGA
TTTCGGCGGTGTTGTTCTCGACCACGCCGCTCTTCACCCTGCCGCTGGCG
ATTCTG
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