mRNA_P-canaliculata_contig102066.319.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A518EVB0_9BACT (Putative DMT superfamily transporter inner membrane protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EVB0_9BACT) HSP 1 Score: 154 bits (389), Expect = 4.510e-41 Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISGFRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLAIL 378
G+L A AA IGT+VP+GRG F DV + PG FIRLA GA+GA P+A ++G RRG+T A E+ +L++P+F AP P SVWG +L GVGCAI GL YHYA RELP GI+ LF++TPLFTLPLAI+
Sbjct: 166 GVLLAVVAAFAIGTSVPLGRGSFGDVSVFPGGFIRLAGGAVGAIPMAILAGIRRGSTSANELGRLLEPIFAAPGPGSVWGRASLFGVGCAIIGLGPYHYAQRELPSGIATTLFASTPLFTLPLAII 291
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A523PL06_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PL06_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 3.250e-16 Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISGF------RRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLAIL 378
G++FA AA+ +A+ G GF D G+ P +RLA G G +A +G T+ A E++ +++P+ VW + L + ++ GL+ +HYALRELP G+S VLFSTTPLF LPL L
Sbjct: 164 GVVFALIAALVYASAILAGHAGFGDGGVLPATVVRLAGGVAGGLVIAIFAGLLGLGAGSGRTSVARELADIVRPI----RTPGVWRRLGLAALFGSVLGLLPFHYALRELPGGLSPVLFSTTPLFLLPLGFL 291
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A2D5XP23_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XP23_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 5.570e-13 Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISG-FRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLA 372
G+L A G A+ I A+ G G GI GA +RL+ G +GAF +A G RRG E ++L +PL P + + + +G ++ GL+ YH ALREL G++A++FSTTPLFTLP A
Sbjct: 159 GVLLATGNALAITVAILSGHEGMQGAGIFSGAGVRLSGGVIGAFLIATTLGVMRRGL--GREFAELTKPL---RRPQGMRALLIASVIG-SVLGLIPYHLALRELSAGVAALVFSTTPLFTLPFA 277
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A800MF66_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MF66_9BACT) HSP 1 Score: 73.2 bits (178), Expect = 1.410e-12 Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 1
Query: 1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISG-FRRGTTPAAEVSKLIQPL-----FVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLA 372
G+L A G A+ I ++ G G GI GA +RL+ G +GAF +A + G RRG E + L +PL A ASV GSV GL+ YH ALREL G++A++FSTTPLFTLP A
Sbjct: 159 GVLLATGNALAITISILSGHEGMQGAGIFSGAAVRLSGGVIGAFLIATVFGVMRRGL--GREFAALTKPLRRRQGLRALLIASVIGSVL---------GLIPYHLALRELSAGVAALVFSTTPLFTLPFA 277
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A2E6D8Y1_9BACT (Uncharacterized protein n=4 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D8Y1_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 5.390e-8 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 43 AVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISGFRRG-TTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPL 369
AV +G + V + G +R+ G LGA LAA G R T+P EV+ L L P V + + + ++ + Y+ ALR+LP G++A+LF+TTPLFTLPL
Sbjct: 180 AVVLGHDALAGVDVITGGGVRVIGGLLGALVLAAAMGVARPRTSPRREVAHLTAGLHCLP----VLRLLLIPSLCASLLNQIPYNLALRDLPGGVAALLFATTPLFTLPL 285
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Match: A0A518BKV4_9BACT (Putative DMT superfamily transporter inner membrane protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BKV4_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 1.200e-5 Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 1 GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLA-AISGFRRGTTPAAEVSKLIQPLFVAPSPASVWGSVALTGVGCAIAGLVTYHYALRELPPGISAVLFSTTPLFTLPLAI 375
G+ A AA++ A+ GR GF V + PG +RL G GA +A A+ G R +++L+ L P+ + + L G A+ L + AL L PG+SA+LF+TTPLF LP+ +
Sbjct: 166 GVSLASLAALSQAFAIVSGRRGFEGVDLLPGTVLRLVGGVAGAALIAIALGGLRGRGGMRRSLTQLVGGLGHRPTLLLLLPPI-LVG---AVLNLPLHSLALGSLSPGVSAILFATTPLFALPIGL 287 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102066.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102066.319.1 >prot_P-canaliculata_contig102066.319.1 ID=prot_P-canaliculata_contig102066.319.1|Name=mRNA_P-canaliculata_contig102066.319.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=126bp GILFAFGAAVTIGTAVPIGRGGFSDVGICPGAFIRLAAGALGAFPLAAISback to top mRNA from alignment at P-canaliculata_contig102066:120..497+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102066.319.1 ID=mRNA_P-canaliculata_contig102066.319.1|Name=mRNA_P-canaliculata_contig102066.319.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at P-canaliculata_contig102066:120..497+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102066:120..497+ >mRNA_P-canaliculata_contig102066.319.1 ID=mRNA_P-canaliculata_contig102066.319.1|Name=mRNA_P-canaliculata_contig102066.319.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at P-canaliculata_contig102066:120..497+ (Pelvetia canaliculata dioecious)back to top |