mRNA_P-canaliculata_contig102064.318.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102064.318.1
Unique NamemRNA_P-canaliculata_contig102064.318.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A5C6A0M1_9BACT (Uncharacterized protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A0M1_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.540e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 KTGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQFA 198
            ++G  VRCVLL +RTR+GGWRA++   +  GPV      P    AGD V+LK+  +S +S  AQFA
Sbjct:  121 RSGEWVRCVLLDERTRRGGWRARLEGKRHIGPVLG--DPPAGIKAGDTVLLKLSSLSHRSHAAQFA 184          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A5C6ECP6_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6ECP6_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 4.320e-8
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    4 TGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQFA 198
            +G  VRCVLL ++TR+GGWRA+I  +   GPV      P    +G  V L++  +S ++G AQFA
Sbjct:  137 SGDQVRCVLLDEKTRRGGWRARIAGTAHVGPVVVRGEPPRQWKSGMTVPLRLSSLSRRTGAAQFA 201          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: B6IX20_RHOCS (CRISPR-associated protein, TM1791 family n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IX20_RHOCS)

HSP 1 Score: 57.4 bits (137), Expect = 5.300e-8
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
            G+ VR VLL ++T+KGGW+A+   +   GP+ N Q VP +C AGDEV L +
Sbjct:  674 GTRVRAVLLEEKTKKGGWKARYPQNGTVGPIQNTQDVPSNCKAGDEVELVI 724          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A7V4HS02_9BACT (Type III-B CRISPR module RAMP protein Cmr6 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HS02_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 7.250e-8
Identity = 27/65 (41.54%), Postives = 36/65 (55.38%), Query Frame = 1
Query:    1 KTGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQF 195
            +T   V+CVLL ++T+KGGW+AKI     +GP+ N   VP     GD V L V  +      AQF
Sbjct:  690 RTNDRVQCVLLEEKTKKGGWKAKIDPDGLAGPIVNTNDVPPDKKPGDVVTLVVHSVMAGGREAQF 754          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: UPI001B8D900C (type III-B CRISPR module RAMP protein Cmr6 n=1 Tax=Chloracidobacterium aggregatum TaxID=2851959 RepID=UPI001B8D900C)

HSP 1 Score: 55.1 bits (131), Expect = 3.470e-7
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGIS 171
            G+ V+ +LL ++T+KGGW+A+ VDS  SGP+ N + VP     G+EV L V   S
Sbjct:  705 GNTVKAMLLEEKTKKGGWKARHVDSNQSGPIVNTEKVPGDKQPGEEVELIVASAS 759          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: UPI001BB2DB3E (hypothetical protein n=1 Tax=Chloracidobacterium thermophilum TaxID=458033 RepID=UPI001BB2DB3E)

HSP 1 Score: 52.8 bits (125), Expect = 7.110e-7
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
            G+ V+ VLL ++T+KGGW+A+ +DS+  GP+ N + VP     G+EV L V
Sbjct:   67 GTTVKAVLLEEKTKKGGWKARHLDSRREGPIVNTKEVPGDKQPGEEVELIV 117          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: H7EMP8_9SPIR (Uncharacterized protein n=1 Tax=Treponema saccharophilum DSM 2985 TaxID=907348 RepID=H7EMP8_9SPIR)

HSP 1 Score: 52.8 bits (125), Expect = 2.260e-6
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    7 GSLVRCVLLTQRTRKGGWRAKIVDS-KFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQF 195
            GS+  CVLL ++T+KGGW+A + D+ +  G + N   VP   +AGDE+ LKV  +   + + ++
Sbjct:  621 GSIQVCVLLQEKTKKGGWKACVKDTPEICGSIINTADVPTDKNAGDEIKLKVASVKGDTSSFRY 684          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: G2LF97_CHLTF (CRISPR-associated RAMP protein, Cmr6 family n=3 Tax=Chloracidobacterium TaxID=458032 RepID=G2LF97_CHLTF)

HSP 1 Score: 52.8 bits (125), Expect = 2.270e-6
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
            G+ V+ VLL ++T+KGGW+A+ +DS+  GP+ N + VP     G+EV L V
Sbjct:  705 GTTVKAVLLEEKTKKGGWKARHLDSRREGPIVNTKEVPGDKQPGEEVELIV 755          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A7V3JKR7_9BACT (Type III-B CRISPR module RAMP protein Cmr6 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JKR7_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.270e-6
Identity = 25/60 (41.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query:   16 VRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQF 195
            V C LL ++T+KGGW+AK++ +   GP+ N   VP    AGD V L V  +S      QF
Sbjct:  750 VSCELLAEKTKKGGWKAKLLPNGPEGPIVNTADVPADKKAGDVVNLIVHSVSADGKQVQF 809          
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: UPI001B8C0F4B (hypothetical protein n=2 Tax=Chloracidobacterium aggregatum TaxID=2851959 RepID=UPI001B8C0F4B)

HSP 1 Score: 51.6 bits (122), Expect = 4.950e-6
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
            G+ V+ +LL ++T+KGGW+A+ +DS+  GP+ N + VP     G+EV L V
Sbjct:  177 GNTVKAMLLEEKTKKGGWKARHLDSRREGPIVNTKEVPGDKQPGEEVELIV 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A5C6A0M1_9BACT4.540e-1046.97Uncharacterized protein n=1 Tax=Stieleria varia Ta... [more]
A0A5C6ECP6_9BACT4.320e-843.08Uncharacterized protein n=1 Tax=Rubripirellula ten... [more]
B6IX20_RHOCS5.300e-849.02CRISPR-associated protein, TM1791 family n=1 Tax=R... [more]
A0A7V4HS02_9BACT7.250e-841.54Type III-B CRISPR module RAMP protein Cmr6 n=1 Tax... [more]
UPI001B8D900C3.470e-745.45type III-B CRISPR module RAMP protein Cmr6 n=1 Tax... [more]
UPI001BB2DB3E7.110e-745.10hypothetical protein n=1 Tax=Chloracidobacterium t... [more]
H7EMP8_9SPIR2.260e-637.50Uncharacterized protein n=1 Tax=Treponema saccharo... [more]
G2LF97_CHLTF2.270e-645.10CRISPR-associated RAMP protein, Cmr6 family n=3 Ta... [more]
A0A7V3JKR7_9BACT2.270e-641.67Type III-B CRISPR module RAMP protein Cmr6 n=1 Tax... [more]
UPI001B8C0F4B4.950e-643.14hypothetical protein n=2 Tax=Chloracidobacterium a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102064contigP-canaliculata_contig102064:249..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.633084-CDS-P-canaliculata_contig102064:248..4461622815593.633084-CDS-P-canaliculata_contig102064:248..446Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102064 249..446 +
1693494155.6152034-CDS-P-canaliculata_contig102064:248..4461693494155.6152034-CDS-P-canaliculata_contig102064:248..446Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102064 249..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102064.318.1prot_P-canaliculata_contig102064.318.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102064 249..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102064.318.1

>prot_P-canaliculata_contig102064.318.1 ID=prot_P-canaliculata_contig102064.318.1|Name=mRNA_P-canaliculata_contig102064.318.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=66bp
KTGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVI
LKVCGISTQSGNAQFA
back to top

mRNA from alignment at P-canaliculata_contig102064:249..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102064.318.1 ID=mRNA_P-canaliculata_contig102064.318.1|Name=mRNA_P-canaliculata_contig102064.318.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at P-canaliculata_contig102064:249..446+ (Pelvetia canaliculata dioecious)
AAGACAGGATCGCTGGTTCGATGTGTTCTGTTAACACAAAGGACTCGCAA AGGCGGCTGGCGAGCCAAGATCGTGGACTCGAAATTCTCAGGCCCGGTCA CCAACTGGCAAAGCGTCCCGGATAGCTGCGACGCAGGAGACGAAGTCATC CTCAAAGTTTGCGGTATATCAACTCAATCTGGCAACGCTCAATTCGCC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig102064:249..446+

>mRNA_P-canaliculata_contig102064.318.1 ID=mRNA_P-canaliculata_contig102064.318.1|Name=mRNA_P-canaliculata_contig102064.318.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at P-canaliculata_contig102064:249..446+ (Pelvetia canaliculata dioecious)
AAGACAGGATCGCTGGTTCGATGTGTTCTGTTAACACAAAGGACTCGCAA
AGGCGGCTGGCGAGCCAAGATCGTGGACTCGAAATTCTCAGGCCCGGTCA
CCAACTGGCAAAGCGTCCCGGATAGCTGCGACGCAGGAGACGAAGTCATC
CTCAAAGTTTGCGGTATATCAACTCAATCTGGCAACGCTCAATTCGCCAA
GACAGGATCGCTGGTTCGATGTGTTCTGTTAACACAAAGGACTCGCAAAG
GCGGCTGGCGAGCCAAGATCGTGGACTCGAAATTCTCAGGCCCGGTCACC
AACTGGCAAAGCGTCCCGGATAGCTGCGACGCAGGAGACGAAGTCATCCT
CAAAGTTTGCGGTATATCAACTCAATCTGGCAACGCTCAATTCGCC
back to top