mRNA_P-canaliculata_contig102064.318.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A5C6A0M1_9BACT (Uncharacterized protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A0M1_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 4.540e-10 Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 1 KTGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQFA 198
++G VRCVLL +RTR+GGWRA++ + GPV P AGD V+LK+ +S +S AQFA
Sbjct: 121 RSGEWVRCVLLDERTRRGGWRARLEGKRHIGPVLG--DPPAGIKAGDTVLLKLSSLSHRSHAAQFA 184
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A5C6ECP6_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6ECP6_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 4.320e-8 Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 4 TGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQFA 198
+G VRCVLL ++TR+GGWRA+I + GPV P +G V L++ +S ++G AQFA
Sbjct: 137 SGDQVRCVLLDEKTRRGGWRARIAGTAHVGPVVVRGEPPRQWKSGMTVPLRLSSLSRRTGAAQFA 201
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: B6IX20_RHOCS (CRISPR-associated protein, TM1791 family n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IX20_RHOCS) HSP 1 Score: 57.4 bits (137), Expect = 5.300e-8 Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
G+ VR VLL ++T+KGGW+A+ + GP+ N Q VP +C AGDEV L +
Sbjct: 674 GTRVRAVLLEEKTKKGGWKARYPQNGTVGPIQNTQDVPSNCKAGDEVELVI 724
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A7V4HS02_9BACT (Type III-B CRISPR module RAMP protein Cmr6 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HS02_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 7.250e-8 Identity = 27/65 (41.54%), Postives = 36/65 (55.38%), Query Frame = 1
Query: 1 KTGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQF 195
+T V+CVLL ++T+KGGW+AKI +GP+ N VP GD V L V + AQF
Sbjct: 690 RTNDRVQCVLLEEKTKKGGWKAKIDPDGLAGPIVNTNDVPPDKKPGDVVTLVVHSVMAGGREAQF 754
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: UPI001B8D900C (type III-B CRISPR module RAMP protein Cmr6 n=1 Tax=Chloracidobacterium aggregatum TaxID=2851959 RepID=UPI001B8D900C) HSP 1 Score: 55.1 bits (131), Expect = 3.470e-7 Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGIS 171
G+ V+ +LL ++T+KGGW+A+ VDS SGP+ N + VP G+EV L V S
Sbjct: 705 GNTVKAMLLEEKTKKGGWKARHVDSNQSGPIVNTEKVPGDKQPGEEVELIVASAS 759
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: UPI001BB2DB3E (hypothetical protein n=1 Tax=Chloracidobacterium thermophilum TaxID=458033 RepID=UPI001BB2DB3E) HSP 1 Score: 52.8 bits (125), Expect = 7.110e-7 Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
G+ V+ VLL ++T+KGGW+A+ +DS+ GP+ N + VP G+EV L V
Sbjct: 67 GTTVKAVLLEEKTKKGGWKARHLDSRREGPIVNTKEVPGDKQPGEEVELIV 117
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: H7EMP8_9SPIR (Uncharacterized protein n=1 Tax=Treponema saccharophilum DSM 2985 TaxID=907348 RepID=H7EMP8_9SPIR) HSP 1 Score: 52.8 bits (125), Expect = 2.260e-6 Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 7 GSLVRCVLLTQRTRKGGWRAKIVDS-KFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQF 195
GS+ CVLL ++T+KGGW+A + D+ + G + N VP +AGDE+ LKV + + + ++
Sbjct: 621 GSIQVCVLLQEKTKKGGWKACVKDTPEICGSIINTADVPTDKNAGDEIKLKVASVKGDTSSFRY 684
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: G2LF97_CHLTF (CRISPR-associated RAMP protein, Cmr6 family n=3 Tax=Chloracidobacterium TaxID=458032 RepID=G2LF97_CHLTF) HSP 1 Score: 52.8 bits (125), Expect = 2.270e-6 Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
G+ V+ VLL ++T+KGGW+A+ +DS+ GP+ N + VP G+EV L V
Sbjct: 705 GTTVKAVLLEEKTKKGGWKARHLDSRREGPIVNTKEVPGDKQPGEEVELIV 755
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: A0A7V3JKR7_9BACT (Type III-B CRISPR module RAMP protein Cmr6 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JKR7_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 2.270e-6 Identity = 25/60 (41.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query: 16 VRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKVCGISTQSGNAQF 195
V C LL ++T+KGGW+AK++ + GP+ N VP AGD V L V +S QF
Sbjct: 750 VSCELLAEKTKKGGWKAKLLPNGPEGPIVNTADVPADKKAGDVVNLIVHSVSADGKQVQF 809
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Match: UPI001B8C0F4B (hypothetical protein n=2 Tax=Chloracidobacterium aggregatum TaxID=2851959 RepID=UPI001B8C0F4B) HSP 1 Score: 51.6 bits (122), Expect = 4.950e-6 Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 7 GSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVILKV 159
G+ V+ +LL ++T+KGGW+A+ +DS+ GP+ N + VP G+EV L V
Sbjct: 177 GNTVKAMLLEEKTKKGGWKARHLDSRREGPIVNTKEVPGDKQPGEEVELIV 227 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102064.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102064.318.1 >prot_P-canaliculata_contig102064.318.1 ID=prot_P-canaliculata_contig102064.318.1|Name=mRNA_P-canaliculata_contig102064.318.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=66bp KTGSLVRCVLLTQRTRKGGWRAKIVDSKFSGPVTNWQSVPDSCDAGDEVIback to top mRNA from alignment at P-canaliculata_contig102064:249..446+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102064.318.1 ID=mRNA_P-canaliculata_contig102064.318.1|Name=mRNA_P-canaliculata_contig102064.318.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at P-canaliculata_contig102064:249..446+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102064:249..446+ >mRNA_P-canaliculata_contig102064.318.1 ID=mRNA_P-canaliculata_contig102064.318.1|Name=mRNA_P-canaliculata_contig102064.318.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at P-canaliculata_contig102064:249..446+ (Pelvetia canaliculata dioecious)back to top |