mRNA_P-canaliculata_contig102056.316.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102056.316.1
Unique NamemRNA_P-canaliculata_contig102056.316.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: S3DDX9_GLAL2 (Homeo n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3DDX9_GLAL2)

HSP 1 Score: 260 bits (665), Expect = 3.090e-82
Identity = 126/281 (44.84%), Postives = 175/281 (62.28%), Query Frame = 1
Query:    1 LRIVRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLP----IHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQHDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            LR VR  PK TY  + K+ G++ S  T  ++L+E+ I  W A+ RP LT+  A +RLA+  ++ GYT E+W  F++SDECSVERG GKA++WVFRTP QKWD +M+  Y   K +S MV    +D   RS+L +++RD  +K+ GYS NSYI  L   + P    +  EG  F QD A IHT+ K   WF +H I ++ WPPYSPDLNPIEH+WW LKR + +  P  +  +    +   + E L   WA+I  +T   + +SMPRR++A + A GW TKY
Sbjct:   87 LRFVRTNPKATYAQVRKEVGLKCSVSTIKKILKENGISNWRARRRPFLTDSVAAKRLAWCLRHRGYTVEEWGLFIWSDECSVERGRGKAQEWVFRTPAQKWDKEMIQTYKANKDLSVMVWGCFWDN-GRSDLYVLDRDFAAKKHGYSANSYIDVLNAQVAPWYEELDDEGYIFMQDNAPIHTAHKVRDWFIEHGIRVIDWPPYSPDLNPIEHIWWVLKRMLIEHYPHLEGASEDNIEE--MQEALKDCWARIPKETFDTLYKSMPRRVEACIKAGGWHTKY 364          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A3E2H4T7_SCYLI (Uncharacterized protein (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2H4T7_SCYLI)

HSP 1 Score: 231 bits (589), Expect = 9.060e-71
Identity = 116/277 (41.88%), Postives = 165/277 (59.57%), Query Frame = 1
Query:   10 VRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIY---DGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQHDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            VR+EPK++   + K   V+IS +   R+L+   I  W  + RP LT+E A +RL +  K + +   D+  ++F+DECS ER  G   +W +  P+QKWD +M++ YSK K +S MV AAI+       +SELVI++RD ESK+ GY+ NSYI  ++  L  I   G+ F QD   IH + K   WF D  I +  WPPYSPDLNPIEH+WWHLK  V +++P+   +        AL   L +AW  + D  + + LES+ +R  AV+AA GW TKY
Sbjct:   90 VRKEPKSSMAKIRKHMEVKISNKAITRILDSVGIWHWRCKRRPYLTDEIAAKRLTWCLKRKDWELSDFLNYIFTDECSAERRAGGITEWAWFQPKQKWDKEMVTTYSKSKDISVMVWAAIWWSNGKVHKSELVILDRDFESKKFGYTANSYIKVIDDQLPKIWEPGLIFMQDNTPIHCANKVKQWFKDMAIPVTDWPPYSPDLNPIEHVWWHLKAKVLEIHPELKDMGKNDEAIIALENALIEAWDLLDDSIIQSCLESLCKRRDAVIAAKGWHTKY 366          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: K2R8D4_MACPH (Transposase-like protein n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2R8D4_MACPH)

HSP 1 Score: 224 bits (571), Expect = 2.590e-68
Identity = 120/280 (42.86%), Postives = 165/280 (58.93%), Query Frame = 1
Query:    1 LRIVRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGG--YSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQIT-GPKAQHDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            LRIVR+EPK TY+ + +Q+GV    RT  RLL+    K  +    P L  +  R                 R  ++SDECS ERG GK R+W FRTP QKW+  M+  Y+KGK VS MV AA      RS+L +M RD E+K+GG  YSTNSY+  LE+ +  +   GM   QD ASIHT+ K   WF + RI +++WP YSPDLNPIEH+W+HLK  V ++ P+ ++   G     + L + L +AW ++      ++L +M RR +AV+AA+GW  KY
Sbjct:   87 LRIVRKEPKITYKEVREQTGVVCHDRTITRLLD---TKPKLPDDTPDLPPKECR-----------------RNIIWSDECSAERGAGKKREWCFRTPGQKWERPMIQTYAKGKDVSVMVWAAFSGKRGRSKLHVMVRDLEAKKGGGGYSTNSYLEVLEKNIPTVWRRGMLVMQDNASIHTAIKVRNWFKEKRITVIRWPAYSPDLNPIEHIWFHLKANVLELYPELNKAPRGKDTIKEKLGKALEEAWEQLPQSLFDSVLGTMKRRCEAVIAAEGWHNKY 346          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A553IEP0_9PEZI (Uncharacterized protein n=1 Tax=Xylaria flabelliformis TaxID=2512241 RepID=A0A553IEP0_9PEZI)

HSP 1 Score: 223 bits (567), Expect = 1.930e-67
Identity = 115/282 (40.78%), Postives = 167/282 (59.22%), Query Frame = 1
Query:    1 LRIVRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKY-EGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKG-VSAMV*AAIYDGC---KRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQHDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            ++ VRR+P++TYQ+L   +G+ +  RT  R+L  H+++KW A  + +L E+ AR RL FARKY +        +  FSDEC V+    K  DWV R   +++   +++  S  K  +S MV   I+       +S L++ME DP++ RGG S+  Y+ TLE GLLP +  G  F QDGA IHT+ K   WF  H IE++ WPPYSPDLNPIEH W  LKR +Y +NP F  +   +A      E++ +AW +IS   +  +L+S+  R+ AV  A GW TK+
Sbjct:   87 VQFVRRQPRSTYQDLRVSTGLNVHDRTFQRVLRRHHLRKWRAAHKIRLDEQKARTRLRFARKYRDPAKLRQLLEAFFSDECIVQTNPDKPSDWVVRFGHERFRKDLVNEESHVKAAISIMVWGMIWQRAGEGHQSPLIVMEGDPKAPRGGVSSRVYLQTLEDGLLPYYEPGDIFMQDGAQIHTANKVKVWFETHGIEVIDWPPYSPDLNPIEHCWHRLKREIYRLNPNFGALQKNEADIATAKEIIQRAWRRISGDLIHRLLDSLKHRLAAVRRARGWYTKF 368          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A364MRN7_9PLEO (X-pro dipeptidyl-peptidase protein n=1 Tax=Stemphylium lycopersici TaxID=183478 RepID=A0A364MRN7_9PLEO)

HSP 1 Score: 219 bits (559), Expect = 3.710e-66
Identity = 119/292 (40.75%), Postives = 165/292 (56.51%), Query Frame = 1
Query:    4 RIVRREPKTTYQNLIKQSGVEI----------SKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDW--RQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIY----DGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQHDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            R  R   K  Y  L K+ GV I          S+RT  R+L+   +     + RPKL   HA +RL FAR+Y  +    W  R   FSDEC V++G+G  ++W FR P +KW  +M+S +   +  + MV A+I+       +RS LV+MERD ++ RGGYS  SYI  L +GLLP +     F QDGA IH SR   A+  +H I  + WPPYSPDLNPIEH+WW LKR +Y   PQ++ ++  + + D   E L + W  I  + +  ++ SMP+R+ A   A GWQTKY
Sbjct:   88 RKARAASKIEYSELAKE-GVVINADRTTSKPPSRRTLYRVLKGDGLINHRFKKRPKLNRGHAVKRLQFARQYRQFA---WGRRTLKFSDECLVQKGSGANQEWCFRFPWEKWKSEMISEHGTSRKPAQMVWASIWLDERGRARRSNLVVMERDSDAPRGGYSAQSYIEALTKGLLPHYRRSQLFMQDGAGIHRSRAVAAFLQEHHINTIAWPPYSPDLNPIEHLWWALKRRMYKHYPQYNNLSQAEEEWDGFCEALKECWRSIPSKLIKRLIMSMPQRLDACRRARGWQTKY 375          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A1E3BGB8_9EURO (Uncharacterized protein n=2 Tax=Aspergillus cristatus TaxID=573508 RepID=A0A1E3BGB8_9EURO)

HSP 1 Score: 218 bits (554), Expect = 1.490e-65
Identity = 115/277 (41.52%), Postives = 157/277 (56.68%), Query Frame = 1
Query:   10 VRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQ--QKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQ-HDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            ++R+P    +++ K   + IS RT A +L+E     W AQ RP+LTEE A+ R  +A   + +T E W + ++SDECSVE G GK   WV+R     +KW  K +  Y+KGKG+S M+ AAI+ G   +E+  M RD ES R GYS+ SY+  +E  L  I   GM F QD A IHT+     WF +H I L+ WPPYSPDLNPIEH W  LK  +Y + P  +   G K Q  +     +  AW  +  +    ++ SM  R+ AVL A GW T Y
Sbjct:   88 IKRDPFIKTEDICKLLEMPISTRTIACMLKESGYGHWRAQKRPQLTEEIAKLRYEWAYVRKDWTHEQWSKVIWSDECSVELGKGKKNQWVWRLNHFNEKWKKKHIIPYTKGKGISIMIWAAIWGG-SHTEIYQMSRDEESARRGYSSQSYLKLIEDYLPAIWESGMEFMQDNAPIHTANIIKNWFDEHGIPLIDWPPYSPDLNPIEHAWAKLKERIYILYPDLESFNGTKEQLKEQFYMAMEDAWESLGQEYFDGLVRSMENRVNAVLEAKGWYTHY 363          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A2S7PAX9_9HELO (Transposable element tc3 transposase protein n=1 Tax=Rutstroemia sp. NJR-2017a BBW TaxID=2070414 RepID=A0A2S7PAX9_9HELO)

HSP 1 Score: 216 bits (549), Expect = 4.150e-65
Identity = 111/275 (40.36%), Postives = 151/275 (54.91%), Query Frame = 1
Query:   10 VRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQH-DALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            +R+ PK T+    +  G+++S      L + H I  W A+ RP+L ++                          DECS ERG GK  +WVF TP QKWD  +++ Y KGK +  MV  A +   KR+ L IM RD ESK+ GYS  SY+  L++ +LP + EG+ F QD A IHT++K   WF ++ I    WPPYSPDLNPIE+ WW LKR + ++ P F   +G   +    L E L  AW  + D     ++ESMPRRIQA + A GW TKY
Sbjct:   90 IRKYPKVTFDQRREDLGLKMSNTYIKNLCKLHGITYWCAKKRPELKQD--------------------------DECSAERGRGKVVEWVFGTPTQKWDPVLVTTYKKGKDIRVMVWGAFWGDGKRTPLFIMNRDFESKKYGYSVESYLEVLDEMVLPYYEEGLIFMQDNAPIHTAKKVKQWFDENGIRTTDWPPYSPDLNPIENAWWVLKRKMMEMFPDFSVSSGSGEEDIKQLEECLKAAWDALDDDFFITLVESMPRRIQACIEAKGWHTKY 338          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A8H4H0Z7_9EURO (Uncharacterized protein n=1 Tax=Aspergillus fumigatiaffinis TaxID=340414 RepID=A0A8H4H0Z7_9EURO)

HSP 1 Score: 216 bits (551), Expect = 4.210e-65
Identity = 111/280 (39.64%), Postives = 167/280 (59.64%), Query Frame = 1
Query:    1 LRIVRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQ--QKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQ-HDALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            LR +R +P  +Y+++ +++GV +S  T  + L++     W A+ RP+LT E A+ RL +A+  E +  E++++ ++SDECS++ G GK + WV+R      KW  + ++ Y K K VS M+  AI+ G   SE+  M RD  S R GYS  SY+  LE+ L  I+   M+F QD A IHT+R    +F ++ I  + WPPYSPDLNPIEH W  LK  +Y ++P  +   G      D   E++ +AW  +  +    ++ESMPRRIQAV+ A GW TKY
Sbjct:   85 LRAIRTDPFISYKDIREKTGVSVSDTTIRKCLKKSGYGHWRAKKRPQLTTEAAKARLEWAKARENWGVEEFQRIIWSDECSIQLGKGKGQQWVWRLDHLGSKWKKENIAPYVKPKKVSIMIWVAIW-GSGHSEINRMTRDENSCRNGYSAASYLEILEENLFAIYSPEMSFMQDNAPIHTARIIKKFFEENGISTIDWPPYSPDLNPIEHAWAKLKEMIYRLDPDIENYQGSIGDLKDRFNELIERAWEALGQECFDKLIESMPRRIQAVIEAKGWYTKY 363          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: A0A4S3J0Z6_9EURO (Uncharacterized protein n=1 Tax=Aspergillus tanneri TaxID=1220188 RepID=A0A4S3J0Z6_9EURO)

HSP 1 Score: 214 bits (545), Expect = 2.830e-64
Identity = 117/278 (42.09%), Postives = 171/278 (61.51%), Query Frame = 1
Query:    4 RIVRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQHD--ALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            R+VRR P  +++ L  ++    S  T  R L++++I+KW ++ R  L++E AR RL FAR++  +  + W  ++FSDECSV+R   K   +VFR   + W   ++++   GK +S MV  +I+ G  RS+LV+MERD  S R GY+  SYI TLE GL+  +  G  FQQD A IHT+     WF  H I ++KWPP+SPDLNPIEH+W  LKR + +++P    + G K+Q D     E + +AW  I    + N+++SMPRR+ AV  A GW TKY
Sbjct:   85 RLVRRRPDISWKALTVETPGGASISTIRRALKKYHIRKWRSKKRIPLSKEAARARLEFAREW--FKNDTWHTWIFSDECSVQREANKRLKFVFRYQNEGWRDDLVNLCYHGKPISQMVWGSIWRG-GRSKLVVMERDENSPRNGYTARSYIKTLEDGLIEHYKPGTPFQQDNAKIHTAELTQEWFELHGIWVIKWPPHSPDLNPIEHVWNLLKRKLLELHPYL-YLQG-KSQSDWRNFEEAIQEAWWAIPQALIDNLIDSMPRRVMAVYRARGWYTKY 357          
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Match: Q1T726_ASPOZ (Transposase n=3 Tax=cellular organisms TaxID=131567 RepID=Q1T726_ASPOZ)

HSP 1 Score: 213 bits (542), Expect = 7.960e-64
Identity = 119/277 (42.96%), Postives = 166/277 (59.93%), Query Frame = 1
Query:    7 IVRREPKTTYQNLIKQSGVEISKRTCARLLEEHNIKKWVAQARPKLTEEHARERLAFARKYEGYTAEDWRQFVFSDECSVERGTGKARDWVFRTPQQKWDLKMLSVYSKGKGVSAMV*AAIYDGCKRSELVIMERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMAWFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQHD--ALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY 831
            + RR PK  Y+ LI  SG  IS  T  R+L    +KKW A+ R  L  + A++RL FAR +   T     + +FSDECSV+R +  +  +VFR   + +   ++++ + GK +S MV  AI+ G  RS+LV++ERD  S RGGYST SY+A LE+GLLPI+  G  FQQD A IH S +A  W   H I +  WP +SPDLNPIEH+W  LK+ + ++ P+     G ++Q D     E +  AW  I  + +  ++ SMPRR+QAV  A GW TKY
Sbjct:   86 LARRRPKIGYKALIASSGFSISHSTIKRVLRTFQLKKWKAKKRIPLRPDVAKKRLQFARTWANSTYLS--EMMFSDECSVQRKSNNSTQYVFRFSTEAYRKDLVNLTNHGKDISQMVWGAIWIG-GRSQLVVLERDELSPRGGYSTKSYLACLEKGLLPIYKPGSIFQQDNAKIHVSYEAQDWLERHGIWVPDWPAHSPDLNPIEHLWNLLKKKLLELYPEL--FLGGRSQIDWTQFRESIQAAWWAIPQERIDRLIRSMPRRLQAVRLARGWYTKY 357          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102056.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S3DDX9_GLAL23.090e-8244.84Homeo n=1 Tax=Glarea lozoyensis (strain ATCC 20868... [more]
A0A3E2H4T7_SCYLI9.060e-7141.88Uncharacterized protein (Fragment) n=1 Tax=Scytali... [more]
K2R8D4_MACPH2.590e-6842.86Transposase-like protein n=1 Tax=Macrophomina phas... [more]
A0A553IEP0_9PEZI1.930e-6740.78Uncharacterized protein n=1 Tax=Xylaria flabellifo... [more]
A0A364MRN7_9PLEO3.710e-6640.75X-pro dipeptidyl-peptidase protein n=1 Tax=Stemphy... [more]
A0A1E3BGB8_9EURO1.490e-6541.52Uncharacterized protein n=2 Tax=Aspergillus crista... [more]
A0A2S7PAX9_9HELO4.150e-6540.36Transposable element tc3 transposase protein n=1 T... [more]
A0A8H4H0Z7_9EURO4.210e-6539.64Uncharacterized protein n=1 Tax=Aspergillus fumiga... [more]
A0A4S3J0Z6_9EURO2.830e-6442.09Uncharacterized protein n=1 Tax=Aspergillus tanner... [more]
Q1T726_ASPOZ7.960e-6442.96Transposase n=3 Tax=cellular organisms TaxID=13156... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102056contigP-canaliculata_contig102056:1..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score138.7
Seed ortholog evalue2.2e-30
Seed eggNOG ortholog364733.XP_007801844.1
EggNOG free text desc.Encoded by
EggNOG OGs20J74@147545,2E5KT@1,2SCE0@2759,3A5WU@33154,3PGGC@4751,3QY55@4890
COG Functional cat.S
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size834
Cds size432
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.5446577-UTR-P-canaliculata_contig102056:0..4021622815593.5446577-UTR-P-canaliculata_contig102056:0..402Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102056 1..402 +
1693494155.580904-UTR-P-canaliculata_contig102056:0..4021693494155.580904-UTR-P-canaliculata_contig102056:0..402Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102056 1..402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.5570374-CDS-P-canaliculata_contig102056:402..8341622815593.5570374-CDS-P-canaliculata_contig102056:402..834Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102056 403..834 +
1693494155.5910463-CDS-P-canaliculata_contig102056:402..8341693494155.5910463-CDS-P-canaliculata_contig102056:402..834Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102056 403..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102056.316.1prot_P-canaliculata_contig102056.316.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102056 403..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102056.316.1

>prot_P-canaliculata_contig102056.316.1 ID=prot_P-canaliculata_contig102056.316.1|Name=mRNA_P-canaliculata_contig102056.316.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MERDPESKRGGYSTNSYIATLEQGLLPIHPEGMTFQQDGASIHTSRKAMA
WFADHRIELLKWPPYSPDLNPIEHMWWHLKRAVYDVNPQFDQITGPKAQH
DALVEVLPQAWAKISDQTLGNILESMPRRIQAVLAADGWQTKY*
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mRNA from alignment at P-canaliculata_contig102056:1..834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102056.316.1 ID=mRNA_P-canaliculata_contig102056.316.1|Name=mRNA_P-canaliculata_contig102056.316.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig102056:1..834+ (Pelvetia canaliculata dioecious)
CTTCGTATCGTACGTCGGGAGCCAAAGACGACGTACCAAAATCTCATCAA GCAGTCGGGGGTCGAAATTTCGAAACGGACATGCGCCAGGCTTCTTGAGG AGCACAATATCAAGAAATGGGTAGCCCAAGCACGCCCAAAATTGACCGAA GAGCATGCCCGAGAGCGCCTGGCATTTGCGCGCAAATACGAAGGGTATAC CGCCGAGGATTGGCGCCAGTTCGTCTTCTCGGACGAGTGCTCCGTTGAGC GCGGGACTGGCAAGGCACGAGATTGGGTGTTCCGCACGCCACAGCAAAAG TGGGACCTCAAAATGTTGTCTGTATACTCAAAAGGTAAGGGAGTGTCCGC CATGGTCTGAGCAGCGATCTACGACGGGTGTAAGAGGTCCGAGTTGGTCA TAATGGAGCGCGATCCCGAATCGAAGCGCGGCGGGTATTCGACCAACTCC TACATCGCTACGCTTGAACAGGGACTACTACCAATTCACCCGGAGGGCAT GACGTTCCAACAAGACGGCGCATCGATCCATACGTCCCGAAAAGCAATGG CGTGGTTCGCGGATCACCGAATCGAACTGCTGAAGTGGCCGCCGTATTCC CCGGATCTGAACCCAATCGAACACATGTGGTGGCACCTCAAGCGCGCGGT CTACGACGTCAACCCTCAGTTCGATCAAATTACAGGGCCTAAGGCGCAAC ATGACGCATTGGTTGAGGTCCTACCCCAAGCATGGGCGAAGATATCCGAC CAAACGTTGGGCAATATTCTTGAGAGCATGCCACGAAGGATCCAGGCTGT TTTGGCCGCTGACGGGTGGCAGACAAAGTATTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102056:1..834+

>mRNA_P-canaliculata_contig102056.316.1 ID=mRNA_P-canaliculata_contig102056.316.1|Name=mRNA_P-canaliculata_contig102056.316.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig102056:1..834+ (Pelvetia canaliculata dioecious)
ATGGAGCGCGATCCCGAATCGAAGCGCGGCGGGTATTCGACCAACTCCTA
CATCGCTACGCTTGAACAGGGACTACTACCAATTCACCCGGAGGGCATGA
CGTTCCAACAAGACGGCGCATCGATCCATACGTCCCGAAAAGCAATGGCG
TGGTTCGCGGATCACCGAATCGAACTGCTGAAGTGGCCGCCGTATTCCCC
GGATCTGAACCCAATCGAACACATGTGGTGGCACCTCAAGCGCGCGGTCT
ACGACGTCAACCCTCAGTTCGATCAAATTACAGGGCCTAAGGCGCAACAT
GACGCATTGGTTGAGGTCCTACCCCAAGCATGGGCGAAGATATCCGACCA
AACGTTGGGCAATATTCTTGAGAGCATGCCACGAAGGATCCAGGCTGTTT
TGGCCGCTGACGGGTGGCAGACAAAGTATTGAATGGAGCGCGATCCCGAA
TCGAAGCGCGGCGGGTATTCGACCAACTCCTACATCGCTACGCTTGAACA
GGGACTACTACCAATTCACCCGGAGGGCATGACGTTCCAACAAGACGGCG
CATCGATCCATACGTCCCGAAAAGCAATGGCGTGGTTCGCGGATCACCGA
ATCGAACTGCTGAAGTGGCCGCCGTATTCCCCGGATCTGAACCCAATCGA
ACACATGTGGTGGCACCTCAAGCGCGCGGTCTACGACGTCAACCCTCAGT
TCGATCAAATTACAGGGCCTAAGGCGCAACATGACGCATTGGTTGAGGTC
CTACCCCAAGCATGGGCGAAGATATCCGACCAAACGTTGGGCAATATTCT
TGAGAGCATGCCACGAAGGATCCAGGCTGTTTTGGCCGCTGACGGGTGGC
AGACAAAGTATTGA
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