mRNA_P-canaliculata_contig102049.315.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102049.315.1
Unique NamemRNA_P-canaliculata_contig102049.315.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A7X0H6H2_9BACT (Stage II sporulation protein D n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H6H2_9BACT)

HSP 1 Score: 133 bits (335), Expect = 3.910e-34
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:    1 WGPIPRNRIALSRRIAAWGRAESRAEHHAVAGLGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY 450
            WGPI R+R  LS+RI  WG+       H+V  LGTL  V+V+  NRV RPA + L D +G ++ +  E FRN+CNF   G  P+    +LLS+HVDV V    V F   XXXXXXX  SQWGA+AMA AGH YAAIL FYYPGA++  +Y
Sbjct:  324 WGPIVRDRATLSKRIREWGKRHK----HSVQALGTLQSVRVSARNRVGRPAQYLLVDTSGKSYRIGCEFFRNSCNFTRDGEIPLDSKRKLLSAHVDVDVSATQVRFTXXXXXXXXXXXSQWGAQAMAKAGHGYAAILGFYYPGARVTPIY 469          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A2D5Z4Y2_9BACT (SpoIID domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z4Y2_9BACT)

HSP 1 Score: 123 bits (309), Expect = 1.310e-30
Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 WGPIPRNRIALSRRIAAWGRAESRAEHHAVAGLGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY 450
            WGP+ R+R AL+RR+A+WGRA      H +A L  +  V+V++ N V R A F +  D G  F +  E FR+ACN+  AG+  +    RL SSHV V+V GG V F  G       G+ Q+GA+AMA AGH   AIL FYYPGA + R+Y
Sbjct:  269 WGPVARDRGALARRLASWGRAH----RHDIANLKRIHNVRVSSRNSVGRVAGFVVVGDEGRIFDIGPESFRHACNYAPAGMA-LAADQRLFSSHVRVTVAGGRVHFTDGRGYGHGVGMGQFGAQAMAMAGHTAPAILAFYYPGAAIERVY 413          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A7Y5WA80_9BACT (SpoIID/LytB domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5WA80_9BACT)

HSP 1 Score: 102 bits (253), Expect = 1.500e-22
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   31 LSRRIAAWGR-AESRAEHHAVAGLGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY 450
            LS+RI AWG+ A+S  E      L  L +V+V   N   RP  + LTDD    ++L AE FRNACN PA G+PP+ R  R+ S  ++  V    V  R G       G+ QW A+ MAD+G D++ +L+ +YPGA +++ Y
Sbjct:  320 LSKRIRAWGKMAKSEVET-----LTRLRKVEVRERNAADRPIRYTLTDDRARTYVLTAEEFRNACNHPAPGVPPITRENRINSGDLEAEVWADRVRIR-GRGWGHGVGMCQWCAQGMADSGQDWSTMLRDFYPGATVVKAY 454          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A0T6A3E9_9BACT (Cell division protein, stage II sporulation protein D n=1 Tax=candidate division NC10 bacterium CSP1-5 TaxID=1640516 RepID=A0A0T6A3E9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 4.850e-10
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   97 LGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRL 447
            LG + R++ A   R  R +  R+ DD G   +LD +G R            +  P R+ S+   +   GG +IF  G       GLSQWGAK MAD  + Y  ILK Y+P A+L RL
Sbjct:  259 LGEIRRIETARRTRSGRVSRLRIWDDAG---VLDIDGKR---------FRQILGPDRIRSTRFTIYPNGGEMIFI-GQGWGHGVGLSQWGAKGMADLAYSYPEILKHYFPLAELRRL 362          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A7M3MDY5_9DELT (SpoIID domain-containing protein n=2 Tax=Oceanidesulfovibrio indonesiensis TaxID=54767 RepID=A0A7M3MDY5_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 7.820e-8
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  145 RPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMR 444
            R  SF +  DTG   +         C   +A L P + P+RL     DV +EG  V+   G       G+SQWGA+AMA+ G  Y AIL  Y+PGA+L++
Sbjct:  379 RIESFHVRTDTGMQAL--------PCRDVSALLAPERLPSRLC----DVRLEGDEVVLS-GTGYGHGMGMSQWGARAMAEKGRSYVAILNRYFPGAELLQ 465          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A3C1QPV1_9FIRM (Uncharacterized protein (Fragment) n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3C1QPV1_9FIRM)

HSP 1 Score: 57.0 bits (136), Expect = 2.140e-7
Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 1
Query:   94 GLGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVK----RPTRLLSSH--VDVSVEGG---HVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLM 441
            G G L  ++ A  +   R    RL    G A+I      R A     A L  V+    R T L S+H  ++V  +G      +  +G       G+SQWGAK MA+AGHDY  IL  YYP ++L+
Sbjct:   18 GFGELVGLEAAERDERGRVVRLRLVGSQGEAWIDGELNVRRALQ--PASLQRVRDSLGRQTLLPSAHFFLEVQRDGSGKLQAVQVYGGGAGHQLGMSQWGAKGMAEAGHDYLTILNTYYPQSRLI 140          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A1F9FPR9_9DELT (SpoIID domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16 TaxID=1797862 RepID=A0A1F9FPR9_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 4.660e-7
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:  274 SSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY 450
            S+  +V +E G  +F  G       G+ QWGAK MA+AGH+Y  ILKFYY  A+LM+ Y
Sbjct:  325 STWFNVGIENGAAVFA-GRGYGHGVGMCQWGAKGMAEAGHNYRDILKFYYSDAELMKTY 382          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A7Y4R8S7_9BACT (SpoIID/LytB domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y4R8S7_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 4.780e-7
Identity = 40/150 (26.67%), Postives = 64/150 (42.67%), Query Frame = 1
Query:    1 WGPIPRNRIALSRRIAAWGRAESRAEHHAVAGLGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY 450
            WGP+  +   ++ ++ +             A +G +  +++     V R  + RLT   G +  + +E FR A               ++ S+H  V  +    +F  G       GL QWG +AMA  G D  +ILK YYPG  L R+Y
Sbjct:  281 WGPVRLSAADIAAKLPSQA-----------AKVGRVDAIEIIDRTPVGRAKTLRLTGSDGRSVTMMSETFRLAVG-----------SMKIRSTHFTVRRDRDGFVFTDGRGFGHASGLCQWGMEAMARRGFDAGSILKHYYPGMHLTRVY 408          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A532DLF6_9BACT (SpoIID/LytB domain-containing protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532DLF6_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 8.640e-7
Identity = 40/117 (34.19%), Postives = 54/117 (46.15%), Query Frame = 1
Query:   97 LGTLARVQVATYNRVKRPASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRL 447
            +GT+A      Y+R  R A  R+    G   IL  E  R A  +    L P        S+  D+   G  V+   G       GL QWGAK +A  G+ Y AIL++Y+PG +LM L
Sbjct:  272 VGTIATFAPLAYSRAGRVARLRVLHSEGE-LILRGEDLRKAIGY---SLVP--------STQFDIEAIGREVVLI-GRGAGHGVGLCQWGAKELASLGYPYQAILRYYFPGTELMYL 375          
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Match: A0A1Q3RDC7_9FIRM (SpoIID domain-containing protein n=1 Tax=Clostridiales bacterium 38-18 TaxID=1895746 RepID=A0A1Q3RDC7_9FIRM)

HSP 1 Score: 57.4 bits (137), Expect = 9.610e-7
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  268 LLSSHVDVSVEGGHVIFRHGXXXXXXXGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY 450
            L +S     +  G+V+F +G       G+SQWGAKAMAD G DY AILK+YY   +L++L+
Sbjct:  530 LYNSTESFDITDGYVVF-YGHGYGHGLGMSQWGAKAMADLGFDYEAILKYYYKDTELIQLH 589          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102049.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X0H6H2_9BACT3.910e-3452.00Stage II sporulation protein D n=1 Tax=Algisphaera... [more]
A0A2D5Z4Y2_9BACT1.310e-3046.00SpoIID domain-containing protein n=1 Tax=Phycispha... [more]
A0A7Y5WA80_9BACT1.500e-2240.43SpoIID/LytB domain-containing protein n=1 Tax=Phyc... [more]
A0A0T6A3E9_9BACT4.850e-1036.75Cell division protein, stage II sporulation protei... [more]
A0A7M3MDY5_9DELT7.820e-838.00SpoIID domain-containing protein n=2 Tax=Oceanides... [more]
A0A3C1QPV1_9FIRM2.140e-734.40Uncharacterized protein (Fragment) n=1 Tax=Firmicu... [more]
A0A1F9FPR9_9DELT4.660e-747.46SpoIID domain-containing protein n=1 Tax=Deltaprot... [more]
A0A7Y4R8S7_9BACT4.780e-726.67SpoIID/LytB domain-containing protein n=1 Tax=Phyc... [more]
A0A532DLF6_9BACT8.640e-734.19SpoIID/LytB domain-containing protein n=1 Tax=Nitr... [more]
A0A1Q3RDC7_9FIRM9.610e-745.90SpoIID domain-containing protein n=1 Tax=Clostridi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102049contigP-canaliculata_contig102049:547..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.8
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog1142394.PSMK_31540
KEGG koko:K06381
EggNOG free text desc.Stage II sporulation protein
EggNOG OGs2J08W@203682,COG2385@1,COG2385@2
COG Functional cat.D
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorymitochondrion
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.5102632-CDS-P-canaliculata_contig102049:546..9991622815593.5102632-CDS-P-canaliculata_contig102049:546..999Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102049 547..999 -
1693494155.5706036-CDS-P-canaliculata_contig102049:546..9991693494155.5706036-CDS-P-canaliculata_contig102049:546..999Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102049 547..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102049.315.1prot_P-canaliculata_contig102049.315.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102049 547..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102049.315.1

>prot_P-canaliculata_contig102049.315.1 ID=prot_P-canaliculata_contig102049.315.1|Name=mRNA_P-canaliculata_contig102049.315.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=151bp
WGPIPRNRIALSRRIAAWGRAESRAEHHAVAGLGTLARVQVATYNRVKRP
ASFRLTDDTGTAFILDAEGFRNACNFPAAGLPPVKRPTRLLSSHVDVSVE
GGHVIFRHGHGHGHGVGLSQWGAKAMADAGHDYAAILKFYYPGAQLMRLY
*
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mRNA from alignment at P-canaliculata_contig102049:547..999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102049.315.1 ID=mRNA_P-canaliculata_contig102049.315.1|Name=mRNA_P-canaliculata_contig102049.315.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at P-canaliculata_contig102049:547..999- (Pelvetia canaliculata dioecious)
TGGGGCCCGATCCCCCGCAACCGCATCGCCCTCTCCCGCCGCATCGCCGC GTGGGGCCGGGCCGAAAGCCGCGCCGAGCACCATGCCGTCGCCGGGCTGG GCACCCTCGCCCGCGTTCAGGTCGCCACCTACAACCGCGTGAAACGGCCC GCATCTTTCCGTCTCACCGACGACACCGGCACCGCCTTCATCCTCGACGC CGAGGGTTTTCGAAACGCCTGCAACTTTCCCGCCGCCGGCCTGCCCCCGG TCAAGCGCCCCACCCGCCTGCTCAGCAGCCACGTCGACGTCTCGGTCGAA GGCGGCCACGTCATCTTCCGCCACGGCCACGGCCACGGCCACGGCGTCGG CCTCAGCCAGTGGGGCGCCAAAGCCATGGCCGACGCCGGCCACGACTACG CCGCCATCCTGAAGTTCTACTACCCCGGCGCGCAGCTGATGCGGTTGTAT TGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102049:547..999-

>mRNA_P-canaliculata_contig102049.315.1 ID=mRNA_P-canaliculata_contig102049.315.1|Name=mRNA_P-canaliculata_contig102049.315.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at P-canaliculata_contig102049:547..999- (Pelvetia canaliculata dioecious)
TGGGGCCCGATCCCCCGCAACCGCATCGCCCTCTCCCGCCGCATCGCCGC
GTGGGGCCGGGCCGAAAGCCGCGCCGAGCACCATGCCGTCGCCGGGCTGG
GCACCCTCGCCCGCGTTCAGGTCGCCACCTACAACCGCGTGAAACGGCCC
GCATCTTTCCGTCTCACCGACGACACCGGCACCGCCTTCATCCTCGACGC
CGAGGGTTTTCGAAACGCCTGCAACTTTCCCGCCGCCGGCCTGCCCCCGG
TCAAGCGCCCCACCCGCCTGCTCAGCAGCCACGTCGACGTCTCGGTCGAA
GGCGGCCACGTCATCTTCCGCCACGGCCACGGCCACGGCCACGGCGTCGG
CCTCAGCCAGTGGGGCGCCAAAGCCATGGCCGACGCCGGCCACGACTACG
CCGCCATCCTGAAGTTCTACTACCCCGGCGCGCAGCTGATGCGGTTGTAT
TGATGGGGCCCGATCCCCCGCAACCGCATCGCCCTCTCCCGCCGCATCGC
CGCGTGGGGCCGGGCCGAAAGCCGCGCCGAGCACCATGCCGTCGCCGGGC
TGGGCACCCTCGCCCGCGTTCAGGTCGCCACCTACAACCGCGTGAAACGG
CCCGCATCTTTCCGTCTCACCGACGACACCGGCACCGCCTTCATCCTCGA
CGCCGAGGGTTTTCGAAACGCCTGCAACTTTCCCGCCGCCGGCCTGCCCC
CGGTCAAGCGCCCCACCCGCCTGCTCAGCAGCCACGTCGACGTCTCGGTC
GAAGGCGGCCACGTCATCTTCCGCCACGGCCACGGCCACGGCCACGGCGT
CGGCCTCAGCCAGTGGGGCGCCAAAGCCATGGCCGACGCCGGCCACGACT
ACGCCGCCATCCTGAAGTTCTACTACCCCGGCGCGCAGCTGATGCGGTTG
TATTGA
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