mRNA_P-canaliculata_contig102035.314.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 8.290e-22 Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ + +S PAAL +L+ + +L+RLGMGWF GVITR++Q RT HLYD+RV L+ D STRSMKLPL Y D A GSW LL
Sbjct: 557 GFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILL 638
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.840e-21 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ + +S PAAL L+ + +L+RLGMGWF G+ITR++Q RT HLYD+RV L+ D STR MKL L Y D A GSW LL
Sbjct: 27 GFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILL 108
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.660e-20 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ + + P AL + L+ + +L+RLGMGWF G+IT++ Q T HLYD+ V LE D STR MKLPL KYS D AA GSW LL
Sbjct: 42 GFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 123
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 3.600e-20 Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ L +S P+AL Q+LV + +L++LG+GWF GVI+R+A + YD+RV L +DGSTRSMKLPL YS D A GSW LL
Sbjct: 1885 GFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLL 1966
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5KHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK5_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 3.790e-20 Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSW 237
G+ + + P AL + L+ + +L RLGMGWFRG+IT+++Q T HLYD+ + LE D STR MKLPL KYS D AA GSW
Sbjct: 82 GFRIQEAKPVALDRLLLRRGVLARLGMGWFRGLITQQSQKDTRHLYDYCMQLELDQSTRKMKLPLDKYSGDSDAAVGSW 160
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.060e-19 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ + + PAA+ +L+ + +L+RLGMGWF GVITRK+Q RT HLYD+RV L+ D ST SMKLPL Y A GSW LL
Sbjct: 272 GFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5K5W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W3_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.200e-19 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSW 237
G+ + + P AL + L+ +E+L R+GMGWF G+IT ++Q T HLYD+ V LE D STR MK PL KYS D AA GSW
Sbjct: 24 GFRIQEAKPVALDRLLLRREVLFRVGMGWFGGLITEQSQKDTRHLYDYCVQLELDQSTRKMKSPLDKYSGDSDAAVGSW 102
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.610e-19 Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 4 YSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
+ + + P AL + L+ + +L+RLGMGWF G+IT+++Q T HLYD+ V LE D STR+MKLPL KYS D AA GSW LL
Sbjct: 214 FRIQEAKPVALDRLLLRRGVLVRLGMGWFEGLITQQSQKDTRHLYDYSVQLELDQSTRTMKLPLDKYSGDSDAAGGSWVLL 294
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 2.250e-19 Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ + +S PAAL +L+ + +L+RLGMGW G+ITR++Q RT HLYD+RV L+ D STRSMKLPL Y D A SW LL
Sbjct: 126 GFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILL 206
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Match: A0A6H5KEM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM3_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 4.120e-19 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGSWALL 246
G+ L S P AL + L+ + +L+RLGMGWF G+I +++ R HLYD+ V LE D STR+MKLPL KYS D AA GSW LL
Sbjct: 20 GFRLQESTPTALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDKYSGDPDAAAGSWVLL 99 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102035.314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102035.314.1 >prot_P-canaliculata_contig102035.314.1 ID=prot_P-canaliculata_contig102035.314.1|Name=mRNA_P-canaliculata_contig102035.314.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=82bp GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTSHLYDFRVback to top mRNA from alignment at P-canaliculata_contig102035:756..1001- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102035.314.1 ID=mRNA_P-canaliculata_contig102035.314.1|Name=mRNA_P-canaliculata_contig102035.314.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at P-canaliculata_contig102035:756..1001- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102035:756..1001- >mRNA_P-canaliculata_contig102035.314.1 ID=mRNA_P-canaliculata_contig102035.314.1|Name=mRNA_P-canaliculata_contig102035.314.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at P-canaliculata_contig102035:756..1001- (Pelvetia canaliculata dioecious)back to top |