mRNA_P-canaliculata_contig102029.313.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102029.313.1
Unique NamemRNA_P-canaliculata_contig102029.313.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: UPI00040007C5 (metal-sensitive transcriptional regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00040007C5)

HSP 1 Score: 160 bits (406), Expect = 8.760e-50
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 MSVHSPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            MS HSPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILK+HA+GCVNAAI+SG+E  QREKVAELVDLFDKLKR
Sbjct:    1 MSTHSPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKDHASGCVNAAIKSGNEDEQREKVAELVDLFDKLKR 90
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BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A8J3CS33_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS33_9PROT)

HSP 1 Score: 155 bits (392), Expect = 1.200e-47
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MSVHSPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            MS+HS KT+NRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSA+ARAESEILK+HA GC+ AAIQSGDE  QREKVAEL+DLFD+LKR
Sbjct:    1 MSIHSAKTVNRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSALARAESEILKDHAGGCIYAAIQSGDEADQREKVAELIDLFDRLKR 90
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BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: UPI000DBF9A33 (metal-sensitive transcriptional regulator n=1 Tax=Hyphomonas pacifica TaxID=1280941 RepID=UPI000DBF9A33)

HSP 1 Score: 135 bits (340), Expect = 9.910e-40
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S KTINRL+R+EGQVRGIIKMLE++RYCIDVL QMQAVKSA+ARAESEILK+HA  CV  AI+SGD  AQREKV+EL+DLFDKLKR
Sbjct:    4 SSKTINRLRRLEGQVRGIIKMLEEDRYCIDVLNQMQAVKSALARAESEILKDHANSCVAEAIESGDAEAQREKVSELIDLFDKLKR 89
[Close]
BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A8J3G3S1_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G3S1_9PROT)

HSP 1 Score: 131 bits (329), Expect = 4.440e-38
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S KTINRLKR EGQ+RGIIKMLED+RYCID+LTQ+QAVK+A+ARAES+ILKEHAA C+  AI SG+E  QR KV ELVDLFDKLKR
Sbjct:    2 SQKTINRLKRSEGQIRGIIKMLEDDRYCIDILTQIQAVKAAIARAESQILKEHAATCIEHAISSGNEDEQRVKVGELVDLFDKLKR 87
[Close]
BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A371RLB7_9PROT (Transcriptional regulator n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RLB7_9PROT)

HSP 1 Score: 127 bits (320), Expect = 1.110e-36
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S  TI RLKRIEGQVRGI KMLE++RYCIDVL QMQAVK+A+ARAESE+LK+HAA CV  AI+S D  AQREKV+EL+DLFDKLKR
Sbjct:    4 SEATIKRLKRIEGQVRGITKMLEEDRYCIDVLHQMQAVKAALARAESEVLKDHAAHCVEDAIRSADADAQREKVSELIDLFDKLKR 89
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BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A8J3A4Z0_9PROT (Uncharacterized protein n=1 Tax=Aquisalinus luteolus TaxID=1566827 RepID=A0A8J3A4Z0_9PROT)

HSP 1 Score: 124 bits (311), Expect = 2.540e-35
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S +TI RL+RIEGQVRGI KMLE++RYCID+L QMQAVK+A+ARAESEILK+HA+ CV  AI+SG+   QR KVAELVDLFDKLKR
Sbjct:    3 SQRTITRLRRIEGQVRGITKMLEEDRYCIDILHQMQAVKAALARAESEILKDHASHCVEDAIRSGNSEEQRGKVAELVDLFDKLKR 88
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BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A8J3A2A5_9PROT (Uncharacterized protein n=1 Tax=Aquisalinus luteolus TaxID=1566827 RepID=A0A8J3A2A5_9PROT)

HSP 1 Score: 123 bits (308), Expect = 7.280e-35
Identity = 62/86 (72.09%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S +TI +LKRIEGQVRGI KMLE++RYCID+L QMQAVK+A+ARAES+ILK+HAA CV+  I SG+   QREKV+EL+DLFDKLKR
Sbjct:    3 SQRTITKLKRIEGQVRGITKMLEEDRYCIDILHQMQAVKAALARAESDILKDHAAHCVDDTIASGNADEQREKVSELIDLFDKLKR 88
[Close]
BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A2E0U7M3_9PROT (Transcriptional regulator n=3 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2E0U7M3_9PROT)

HSP 1 Score: 122 bits (305), Expect = 2.030e-34
Identity = 60/86 (69.77%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S K + RLKRIEGQVRG+++MLE++RYCI+VL QMQAVKSA++RAESE+LK+HA+ CV   I +G+ T QREKVAEL+DLFDKLKR
Sbjct:    2 SEKVVARLKRIEGQVRGLVRMLEEDRYCIEVLHQMQAVKSALSRAESELLKQHASHCVEDVIATGNTTEQREKVAELIDLFDKLKR 87
[Close]
BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: UPI001AA071AD (metal-sensitive transcriptional regulator n=1 Tax=Parasphingorhabdus sp. JHSY0214 TaxID=2806553 RepID=UPI001AA071AD)

HSP 1 Score: 121 bits (304), Expect = 3.230e-34
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   25 INRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            +NRL RIEGQVRGI KM+ED+RYCID+LTQMQAVKSA+++ ES+ILK+HAA CV  AI SGDE  Q+EK AELVDLF+K+KR
Sbjct:   10 LNRLNRIEGQVRGIAKMVEDDRYCIDILTQMQAVKSALSKVESQILKDHAACCVAEAISSGDEDEQKEKFAELVDLFEKMKR 91
[Close]
BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Match: A0A850H560_9SPHN (Metal-sensitive transcriptional regulator n=1 Tax=Actirhodobacter atriluteus TaxID=2744473 RepID=A0A850H560_9SPHN)

HSP 1 Score: 119 bits (298), Expect = 2.580e-33
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:   13 SPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAESEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR 270
            S K +NRL+RIEGQVRG+ +M+ED+RYCID+LTQ+QAVK+A+ RAESEILK HAA CV  AI SGDE  Q++K +EL+DLF+K KR
Sbjct:    5 SGKIVNRLRRIEGQVRGVAQMVEDDRYCIDILTQVQAVKAALGRAESEILKRHAACCVAEAISSGDEVEQQQKFSELIDLFEKAKR 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102029.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00040007C58.760e-5092.22metal-sensitive transcriptional regulator n=1 Tax=... [more]
A0A8J3CS33_9PROT1.200e-4786.67Uncharacterized protein n=1 Tax=Algimonas arctica ... [more]
UPI000DBF9A339.910e-4080.23metal-sensitive transcriptional regulator n=1 Tax=... [more]
A0A8J3G3S1_9PROT4.440e-3877.91Uncharacterized protein n=1 Tax=Algimonas arctica ... [more]
A0A371RLB7_9PROT1.110e-3676.74Transcriptional regulator n=1 Tax=Parvularcula mar... [more]
A0A8J3A4Z0_9PROT2.540e-3574.42Uncharacterized protein n=1 Tax=Aquisalinus luteol... [more]
A0A8J3A2A5_9PROT7.280e-3572.09Uncharacterized protein n=1 Tax=Aquisalinus luteol... [more]
A0A2E0U7M3_9PROT2.030e-3469.77Transcriptional regulator n=3 Tax=Hyphomonadaceae ... [more]
UPI001AA071AD3.230e-3473.17metal-sensitive transcriptional regulator n=1 Tax=... [more]
A0A850H560_9SPHN2.580e-3367.44Metal-sensitive transcriptional regulator n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102029contigP-canaliculata_contig102029:656..928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score163.7
Seed ortholog evalue4e-38
Seed eggNOG ortholog1121948.AUAC01000003_gene2101
KEGG koko:K21600
EggNOG free text desc.Metal-sensitive transcriptional repressor
EggNOG OGs1N9P2@1224,2UF3F@28211,43YIK@69657,COG1937@1,COG1937@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.427789-CDS-P-canaliculata_contig102029:655..9281622815593.427789-CDS-P-canaliculata_contig102029:655..928Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102029 656..928 -
1693494155.544575-CDS-P-canaliculata_contig102029:655..9281693494155.544575-CDS-P-canaliculata_contig102029:655..928Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102029 656..928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102029.313.1prot_P-canaliculata_contig102029.313.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102029 656..928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102029.313.1

>prot_P-canaliculata_contig102029.313.1 ID=prot_P-canaliculata_contig102029.313.1|Name=mRNA_P-canaliculata_contig102029.313.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=91bp
MSVHSPKTINRLKRIEGQVRGIIKMLEDERYCIDVLTQMQAVKSAMARAE
SEILKEHAAGCVNAAIQSGDETAQREKVAELVDLFDKLKR*
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mRNA from alignment at P-canaliculata_contig102029:656..928-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102029.313.1 ID=mRNA_P-canaliculata_contig102029.313.1|Name=mRNA_P-canaliculata_contig102029.313.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at P-canaliculata_contig102029:656..928- (Pelvetia canaliculata dioecious)
ATGTCTGTACACTCACCTAAGACGATTAACCGCCTTAAGAGAATAGAAGG
CCAGGTGCGCGGTATTATTAAAATGCTGGAGGATGAACGCTATTGCATTG
ATGTCCTAACTCAGATGCAGGCGGTTAAATCCGCCATGGCGCGCGCGGAG
AGCGAAATCCTTAAAGAACATGCGGCGGGTTGCGTAAACGCGGCCATTCA
GTCCGGTGATGAGACAGCTCAGCGCGAAAAAGTCGCTGAGCTCGTAGATC
TTTTTGATAAATTGAAACGCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102029:656..928-

>mRNA_P-canaliculata_contig102029.313.1 ID=mRNA_P-canaliculata_contig102029.313.1|Name=mRNA_P-canaliculata_contig102029.313.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at P-canaliculata_contig102029:656..928- (Pelvetia canaliculata dioecious)
ATGTCTGTACACTCACCTAAGACGATTAACCGCCTTAAGAGAATAGAAGG
CCAGGTGCGCGGTATTATTAAAATGCTGGAGGATGAACGCTATTGCATTG
ATGTCCTAACTCAGATGCAGGCGGTTAAATCCGCCATGGCGCGCGCGGAG
AGCGAAATCCTTAAAGAACATGCGGCGGGTTGCGTAAACGCGGCCATTCA
GTCCGGTGATGAGACAGCTCAGCGCGAAAAAGTCGCTGAGCTCGTAGATC
TTTTTGATAAATTGAAACGCTGAATGTCTGTACACTCACCTAAGACGATT
AACCGCCTTAAGAGAATAGAAGGCCAGGTGCGCGGTATTATTAAAATGCT
GGAGGATGAACGCTATTGCATTGATGTCCTAACTCAGATGCAGGCGGTTA
AATCCGCCATGGCGCGCGCGGAGAGCGAAATCCTTAAAGAACATGCGGCG
GGTTGCGTAAACGCGGCCATTCAGTCCGGTGATGAGACAGCTCAGCGCGA
AAAAGTCGCTGAGCTCGTAGATCTTTTTGATAAATTGAAACGCTGA
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